Wall clock time and date at job start Tue Mar 31 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 H 1.08996 * 115.56123 * 29.31117 * 3 2 1 5 5 C 1.53007 * 117.50150 * 243.62490 * 3 2 1 6 6 C 1.52997 * 60.00086 * 252.50842 * 5 3 2 7 7 H 1.08999 * 117.49962 * 107.48953 * 6 5 3 8 8 C 1.53003 * 117.51806 * 252.51845 * 6 5 3 9 9 N 1.46501 * 109.46945 * 243.71593 * 8 6 5 10 10 C 1.34777 * 119.99810 * 180.02562 * 9 8 6 11 11 O 1.21589 * 120.00117 * 355.01282 * 10 9 8 12 12 N 1.34771 * 119.99946 * 175.01615 * 10 9 8 13 13 C 1.46930 * 120.63297 * 184.94444 * 12 10 9 14 14 C 1.52760 * 109.01130 * 233.58547 * 13 12 10 15 15 C 1.53045 * 109.38321 * 305.58799 * 14 13 12 16 16 C 1.50699 * 109.44876 * 181.25189 * 15 14 13 17 17 H 1.07994 * 120.00104 * 239.93419 * 16 15 14 18 18 C 1.37871 * 119.99951 * 59.94055 * 16 15 14 19 19 N 1.31515 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00147 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47297 * 59.99446 * 20 18 16 22 22 H 1.48497 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46873 * 299.99687 * 20 18 16 24 24 C 1.53039 * 109.53839 * 61.23883 * 15 14 13 25 25 C 1.46928 * 120.63221 * 5.22482 * 12 10 9 26 26 H 1.09003 * 109.46968 * 299.99688 * 1 2 3 27 27 H 1.09001 * 109.47748 * 59.99988 * 1 2 3 28 28 H 1.09002 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46968 * 240.00312 * 2 1 3 30 30 H 1.09001 * 109.47748 * 120.00012 * 2 1 3 31 31 H 1.08997 * 117.49933 * 145.01939 * 5 3 2 32 32 H 1.09002 * 117.49493 * 0.02562 * 5 3 2 33 33 H 1.08996 * 109.46697 * 3.71316 * 8 6 5 34 34 H 1.08996 * 109.47046 * 123.71588 * 8 6 5 35 35 H 0.96999 * 120.00252 * 359.97438 * 9 8 6 36 36 H 1.09000 * 109.58179 * 353.41967 * 13 12 10 37 37 H 1.09003 * 109.58676 * 113.84312 * 13 12 10 38 38 H 1.08995 * 109.56742 * 185.55028 * 14 13 12 39 39 H 1.08998 * 109.38369 * 65.50999 * 14 13 12 40 40 H 1.09006 * 109.45718 * 301.22232 * 15 14 13 41 41 H 0.97008 * 120.00167 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.50160 * 178.68795 * 24 15 14 43 43 H 1.09002 * 109.52796 * 58.60260 * 24 15 14 44 44 H 1.08996 * 109.59101 * 246.15397 * 25 12 10 45 45 H 1.09004 * 109.58573 * 6.43885 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8439 1.9076 -1.2159 6 6 3.5501 1.6579 0.1182 7 1 4.1803 0.7720 0.1959 8 6 4.0300 2.8801 0.9036 9 7 5.4912 2.8520 1.0057 10 6 6.1400 3.8357 1.6598 11 8 5.5225 4.7922 2.0866 12 7 7.4733 3.7591 1.8409 13 6 8.1789 4.7671 2.6440 14 6 9.3263 5.3468 1.8188 15 6 10.2163 4.2078 1.3159 16 6 11.3659 4.7801 0.5273 17 1 11.4992 4.5065 -0.5088 18 6 12.2476 5.6528 1.1288 19 7 12.0851 5.9863 2.3905 20 14 13.6723 6.3628 0.1512 21 1 13.1452 7.1272 -1.0077 22 1 14.4675 7.2666 1.0206 23 1 14.5371 5.2583 -0.3363 24 6 9.3973 3.2758 0.4199 25 6 8.2499 2.6695 1.2340 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7212 2.9428 -1.5344 32 1 3.0091 1.1860 -2.0160 33 1 3.7192 3.7885 0.3876 34 1 3.5956 2.8632 1.9031 35 1 5.9917 2.1251 0.6031 36 1 7.4883 5.5647 2.9180 37 1 8.5791 4.3018 3.5449 38 1 9.9158 6.0230 2.4378 39 1 8.9197 5.8936 0.9680 40 1 10.6030 3.6465 2.1665 41 1 12.7052 6.6007 2.8136 42 1 10.0374 2.4779 0.0433 43 1 8.9897 3.8413 -0.4181 44 1 8.6560 2.0297 2.0174 45 1 7.6056 2.0819 0.5799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581650484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:19 Heat of formation + Delta-G solvation = -38.798500 kcal Electronic energy + Delta-G solvation = -21974.842925 eV Core-core repulsion = 18798.637860 eV Total energy + Delta-G solvation = -3176.205066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39657 -39.31258 -38.40634 -35.68273 -35.24630 -33.10053 -32.65149 -31.68876 -28.48702 -27.28241 -24.71789 -24.58185 -23.82657 -21.99455 -21.87511 -21.25571 -20.21696 -19.08723 -18.29975 -17.37882 -16.74037 -16.55205 -16.02811 -15.60982 -15.29863 -15.17577 -14.93239 -14.81096 -14.56387 -14.44293 -14.15965 -13.80109 -13.39981 -13.15644 -12.99047 -12.91077 -12.78649 -12.49972 -12.37830 -12.16051 -12.11350 -11.93195 -11.84498 -11.43901 -11.37876 -10.95648 -10.94679 -10.80131 -10.70251 -10.39785 -10.14605 -9.37566 -8.06562 -6.20566 1.42587 1.43636 1.50792 1.68445 2.13375 2.44489 2.76207 3.02301 3.19844 3.60773 3.90464 3.99933 4.09958 4.21779 4.28321 4.33094 4.34309 4.47050 4.51653 4.56510 4.60898 4.72798 4.75176 4.78857 4.89160 4.90990 4.98828 5.01208 5.18477 5.19926 5.21775 5.24456 5.26633 5.33593 5.47235 5.50776 5.52795 5.55847 5.66476 5.98778 6.07237 6.12888 6.39285 6.90751 7.00871 7.47393 7.56040 8.96657 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.002904 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.207165 B = 9640.275190 C = 9967.217998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.136 4.136 4 H 0.103 0.897 5 C -0.169 4.169 6 C -0.165 4.165 7 H 0.123 0.877 8 C 0.171 3.829 9 N -0.731 5.731 10 C 0.700 3.300 11 O -0.642 6.642 12 N -0.622 5.622 13 C 0.139 3.861 14 C -0.112 4.112 15 C 0.045 3.955 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 0.951 3.049 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C -0.116 4.116 25 C 0.118 3.882 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.018 0.982 40 H 0.005 0.995 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.412 -14.048 -5.365 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.154 4.154 4 H 0.121 0.879 5 C -0.206 4.206 6 C -0.184 4.184 7 H 0.141 0.859 8 C 0.047 3.953 9 N -0.390 5.390 10 C 0.401 3.599 11 O -0.525 6.525 12 N -0.358 5.358 13 C 0.015 3.985 14 C -0.151 4.151 15 C 0.027 3.973 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.555 5.555 20 Si 0.777 3.223 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.154 4.154 25 C -0.005 4.005 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.781 -13.285 -4.912 23.523 hybrid contribution 1.340 0.721 -0.403 1.574 sum -17.441 -12.564 -5.315 22.143 Atomic orbital electron populations 1.21747 0.95045 1.02052 1.01896 1.21138 0.96336 0.93082 1.02450 1.22544 0.91895 0.99058 1.01932 0.87867 1.23317 1.03131 1.02744 0.91426 1.22462 0.96500 0.98829 1.00586 0.85871 1.20698 0.78019 0.97014 0.99522 1.45131 1.07798 1.26715 1.59351 1.16049 0.81725 0.82890 0.79214 1.90834 1.67507 1.35202 1.58947 1.47401 1.04821 1.29561 1.54005 1.21331 0.93436 0.90592 0.93103 1.21711 0.94868 1.00294 0.98225 1.18606 0.92214 0.92368 0.94147 1.21558 1.11000 1.26908 0.97632 0.92903 1.25721 1.00203 0.96928 0.95823 1.69974 1.37972 1.35379 1.12167 0.85728 0.79634 0.78401 0.78564 1.20150 1.21198 1.19416 1.21870 0.96371 0.99230 0.97953 1.21823 0.93328 0.88123 0.97185 0.92823 0.92628 0.91988 0.91148 0.91389 0.89161 0.87340 0.93084 0.92384 0.75208 0.91644 0.91981 0.90859 0.96309 0.97647 0.93061 0.90637 0.93786 0.90511 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.87 71.98 0.71 -0.77 16 2 C -0.09 -1.00 6.22 30.59 0.19 -0.81 16 3 C -0.14 -1.81 5.46 -10.79 -0.06 -1.87 16 4 H 0.10 1.47 8.07 -2.39 -0.02 1.45 16 5 C -0.17 -2.33 9.82 30.60 0.30 -2.03 16 6 C -0.17 -2.53 5.57 -10.79 -0.06 -2.59 16 7 H 0.12 1.57 8.04 -2.39 -0.02 1.55 16 8 C 0.17 3.88 5.96 86.38 0.51 4.40 16 9 N -0.73 -18.92 5.47 -478.54 -2.62 -21.54 16 10 C 0.70 25.31 8.30 179.06 1.49 26.79 16 11 O -0.64 -28.55 15.77 -4.00 -0.06 -28.61 16 12 N -0.62 -22.51 2.98 -837.72 -2.50 -25.00 16 13 C 0.14 5.81 6.41 86.22 0.55 6.36 16 14 C -0.11 -5.44 5.14 30.53 0.16 -5.28 16 15 C 0.05 2.18 2.07 -11.51 -0.02 2.15 16 16 C -0.53 -28.73 8.56 25.60 0.22 -28.52 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.65 5.30 84.65 0.45 1.10 16 19 N -0.92 -52.36 11.30 21.45 0.24 -52.12 16 20 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 C -0.12 -4.33 5.30 30.67 0.16 -4.17 16 25 C 0.12 3.50 6.39 86.36 0.55 4.05 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.68 7.88 -2.39 -0.02 0.66 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 32 H 0.11 1.23 8.03 -2.39 -0.02 1.21 16 33 H 0.05 1.31 7.88 -2.39 -0.02 1.29 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 8.14 5.89 -92.71 -0.55 7.60 16 36 H 0.07 2.87 6.99 -2.39 -0.02 2.85 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.07 4.00 6.03 -2.39 -0.01 3.99 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.10 2.17 5.64 -2.39 -0.01 2.15 16 Total: -1.00 -66.65 354.83 2.66 -64.00 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.41 Total: 19.04 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.15 Total: -1.18 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -4.87 Total: -98.66 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.06 Total: -28.61 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.65 2.66 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581650484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.198 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds