Wall clock time and date at job start Tue Mar 31 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47227 * 2 1 4 4 H 1.08998 * 115.55060 * 29.28142 * 3 2 1 5 5 C 1.52998 * 117.49973 * 243.60691 * 3 2 1 6 6 C 1.52999 * 117.49981 * 174.98345 * 3 2 1 7 7 H 1.09006 * 117.49794 * 359.97438 * 6 3 2 8 8 N 1.46497 * 117.50264 * 214.98153 * 6 3 2 9 9 C 1.34772 * 120.00433 * 154.99937 * 8 6 3 10 10 O 1.21590 * 120.00054 * 355.01359 * 9 8 6 11 11 N 1.34781 * 120.00408 * 175.01316 * 9 8 6 12 12 C 1.46924 * 120.62630 * 4.93908 * 11 9 8 13 13 C 1.53628 * 108.54010 * 126.36742 * 12 11 9 14 14 C 1.53043 * 109.23937 * 54.85685 * 13 12 11 15 15 C 1.52998 * 109.45886 * 178.48701 * 14 13 12 16 16 C 1.50704 * 109.47266 * 295.06751 * 15 14 13 17 17 H 1.08000 * 119.99969 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99833 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99743 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47306 * 59.99772 * 20 18 16 22 22 H 1.48506 * 109.46937 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47190 * 299.99746 * 20 18 16 24 24 C 1.53039 * 109.54134 * 298.51081 * 14 13 12 25 25 C 1.46924 * 120.63262 * 185.22139 * 11 9 8 26 26 H 1.08999 * 109.46741 * 59.99769 * 1 2 3 27 27 H 1.08997 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47251 * 300.00221 * 1 2 3 29 29 H 1.09009 * 109.46926 * 119.99460 * 2 1 3 30 30 H 1.08994 * 109.47156 * 239.99942 * 2 1 3 31 31 H 1.09003 * 117.49739 * 359.97438 * 5 3 2 32 32 H 1.08994 * 117.50141 * 144.99956 * 5 3 2 33 33 H 0.97005 * 119.99604 * 334.99955 * 8 6 3 34 34 H 1.08995 * 109.59119 * 246.20023 * 12 11 9 35 35 H 1.09003 * 109.58586 * 6.63419 * 12 11 9 36 36 H 1.08999 * 109.63863 * 294.86615 * 13 12 11 37 37 H 1.08997 * 109.45856 * 174.73894 * 13 12 11 38 38 H 1.09004 * 109.45592 * 58.53046 * 14 13 12 39 39 H 1.08998 * 109.46868 * 55.07114 * 15 14 13 40 40 H 1.09000 * 109.46689 * 175.07047 * 15 14 13 41 41 H 0.96999 * 119.99726 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.49646 * 301.41374 * 24 14 13 43 43 H 1.08994 * 109.52399 * 181.33030 * 24 14 13 44 44 H 1.09000 * 109.58432 * 353.37445 * 25 11 9 45 45 H 1.09005 * 109.58316 * 113.79628 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3881 2.1716 0.4810 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6579 0.1187 7 1 4.1803 0.7719 0.1972 8 7 4.0095 2.8284 0.8703 9 6 5.2309 2.8267 1.4400 10 8 5.9152 1.8222 1.4082 11 7 5.6939 3.9385 2.0451 12 6 4.8388 5.1249 2.1868 13 6 4.8113 5.5332 3.6675 14 6 6.2458 5.7299 4.1632 15 6 6.2228 6.1733 5.6274 16 6 5.5739 7.5294 5.7315 17 1 5.2134 8.0253 4.8423 18 6 5.4393 8.1367 6.9620 19 7 5.8778 7.5326 8.0448 20 14 4.6343 9.8173 7.0911 21 1 3.2441 9.7413 6.5746 22 1 4.6122 10.2477 8.5123 23 1 5.4073 10.7994 6.2891 24 6 7.0146 4.4122 4.0415 25 6 7.0652 3.9893 2.5700 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.0104 1.1855 -2.0153 32 1 2.7215 2.9424 -1.5345 33 1 3.4345 3.6048 0.9579 34 1 5.2433 5.9406 1.5875 35 1 3.8285 4.8891 1.8525 36 1 4.3276 4.7520 4.2540 37 1 4.2575 6.4656 3.7768 38 1 6.7367 6.4938 3.5603 39 1 5.6553 5.4527 6.2163 40 1 7.2434 6.2288 6.0062 41 1 5.7834 7.9600 8.9104 42 1 6.5103 3.6416 4.6244 43 1 8.0292 4.5465 4.4165 44 1 7.5243 3.0041 2.4885 45 1 7.6476 4.7143 2.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582059641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:45 Heat of formation + Delta-G solvation = -26.815715 kcal Electronic energy + Delta-G solvation = -22045.174071 eV Core-core repulsion = 18869.488618 eV Total energy + Delta-G solvation = -3175.685453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34615 -38.39364 -37.11021 -34.15542 -33.65809 -32.19199 -31.40424 -30.41477 -27.94977 -24.75581 -24.10376 -22.99855 -22.53035 -21.45662 -20.87431 -20.01528 -19.16695 -17.83397 -16.64620 -16.27018 -15.39138 -15.08206 -14.82375 -14.60796 -14.53696 -13.96429 -13.71814 -13.30833 -13.21987 -12.84889 -12.81048 -12.75879 -12.36618 -12.16453 -11.80636 -11.53664 -11.34784 -11.22275 -11.17286 -10.99894 -10.83628 -10.68907 -10.48764 -10.24955 -10.13592 -9.96762 -9.64809 -9.27440 -8.98828 -8.83558 -8.36704 -8.21838 -6.01092 -4.03381 2.65762 3.15095 3.30412 3.35922 3.37107 3.73232 3.85699 4.43593 4.45095 4.57495 4.72665 4.90330 5.06603 5.08253 5.18692 5.32432 5.34053 5.42872 5.46579 5.51903 5.55096 5.65798 5.68580 5.72240 5.77807 5.80365 5.85905 6.00051 6.06359 6.10460 6.34726 6.39988 6.47773 6.52412 6.65602 6.95672 6.99115 7.07997 7.10614 7.65690 7.80797 7.98595 8.00235 8.40718 8.67054 9.03019 9.60343 11.10137 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.003302 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.520587 B = 8478.287920 C = 9225.514368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.162 4.162 4 H 0.106 0.894 5 C -0.193 4.193 6 C 0.107 3.893 7 H 0.137 0.863 8 N -0.721 5.721 9 C 0.711 3.289 10 O -0.597 6.597 11 N -0.622 5.622 12 C 0.109 3.891 13 C -0.118 4.118 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.130 4.130 25 C 0.130 3.870 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.397 0.603 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -10.497 -17.208 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.182 4.182 4 H 0.124 0.876 5 C -0.232 4.232 6 C 0.000 4.000 7 H 0.155 0.845 8 N -0.376 5.376 9 C 0.413 3.587 10 O -0.476 6.476 11 N -0.358 5.358 12 C -0.014 4.014 13 C -0.156 4.156 14 C -0.098 4.098 15 C -0.009 4.009 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.169 4.169 25 C 0.007 3.993 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.786 -11.184 -17.020 21.467 hybrid contribution -0.871 1.543 0.274 1.792 sum -7.657 -9.641 -16.746 20.785 Atomic orbital electron populations 1.21745 0.95396 1.01597 1.01918 1.21105 0.95988 0.93693 1.02268 1.22930 0.94195 0.98717 1.02337 0.87617 1.23650 1.04468 1.02675 0.92370 1.21501 0.93474 0.90800 0.94193 0.84540 1.44674 1.17050 1.18789 1.57124 1.15753 0.81277 0.83456 0.78223 1.90870 1.58516 1.32321 1.65869 1.47347 1.15192 1.12831 1.60439 1.21896 0.92986 0.87220 0.99278 1.21976 0.99206 1.02136 0.92306 1.21175 0.93388 0.94450 1.00814 1.19121 0.97156 0.95875 0.88781 1.21202 1.38693 1.02963 0.92717 0.92678 1.25025 0.95783 0.97630 0.96025 1.69952 1.46835 1.38330 0.98327 0.86706 0.79935 0.84665 0.76959 1.20302 1.21363 1.20303 1.22043 1.01342 0.98995 0.94471 1.21564 0.80755 1.02286 0.94686 0.92679 0.92697 0.92619 0.91349 0.91664 0.88104 0.88700 0.76599 0.91458 0.91656 0.92263 0.89787 0.92345 0.96660 0.96557 0.92972 0.92058 0.91088 0.89528 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.87 37.16 0.37 -0.63 16 2 C -0.09 -0.70 6.22 -26.73 -0.17 -0.87 16 3 C -0.16 -1.36 5.66 -90.62 -0.51 -1.88 16 4 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 5 C -0.19 -1.59 10.10 -26.73 -0.27 -1.86 16 6 C 0.11 1.16 6.16 -67.93 -0.42 0.74 16 7 H 0.14 1.68 7.39 -51.93 -0.38 1.30 16 8 N -0.72 -8.81 5.47 -58.68 -0.32 -9.14 16 9 C 0.71 11.22 8.30 -86.92 -0.72 10.49 16 10 O -0.60 -11.36 15.33 5.29 0.08 -11.28 16 11 N -0.62 -9.35 2.97 -178.23 -0.53 -9.87 16 12 C 0.11 1.47 6.42 -3.48 -0.02 1.45 16 13 C -0.12 -2.01 5.21 -26.38 -0.14 -2.15 16 14 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.52 -13.93 8.39 -34.44 -0.29 -14.22 16 17 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.13 -2.22 5.36 -26.61 -0.14 -2.36 16 25 C 0.13 1.99 6.44 -3.71 -0.02 1.96 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 31 H 0.10 0.73 8.03 -51.93 -0.42 0.32 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.05 6.31 -40.82 -0.26 3.79 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.71 5.64 -51.93 -0.29 0.42 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -31.42 356.47 -10.33 -41.75 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.90 Total: 1.84 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.75 Total: -8.98 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.11 Total: -44.81 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.42 -10.33 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582059641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.937 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds