Wall clock time and date at job start Tue Mar 31 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47227 * 2 1 4 4 H 1.08998 * 115.55060 * 29.28142 * 3 2 1 5 5 C 1.52998 * 117.49973 * 243.60691 * 3 2 1 6 6 C 1.52999 * 117.49981 * 174.98345 * 3 2 1 7 7 H 1.09006 * 117.49794 * 359.97438 * 6 3 2 8 8 N 1.46497 * 117.50264 * 214.98153 * 6 3 2 9 9 C 1.34772 * 120.00433 * 154.99937 * 8 6 3 10 10 O 1.21590 * 120.00054 * 355.01359 * 9 8 6 11 11 N 1.34781 * 120.00408 * 175.01316 * 9 8 6 12 12 C 1.46924 * 120.62630 * 4.93908 * 11 9 8 13 13 C 1.53628 * 108.54010 * 126.36742 * 12 11 9 14 14 C 1.53043 * 109.23937 * 54.85685 * 13 12 11 15 15 C 1.52998 * 109.45886 * 178.48701 * 14 13 12 16 16 C 1.50704 * 109.47266 * 295.06751 * 15 14 13 17 17 H 1.08000 * 119.99969 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99833 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99743 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47306 * 59.99772 * 20 18 16 22 22 H 1.48506 * 109.46937 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47190 * 299.99746 * 20 18 16 24 24 C 1.53039 * 109.54134 * 298.51081 * 14 13 12 25 25 C 1.46924 * 120.63262 * 185.22139 * 11 9 8 26 26 H 1.08999 * 109.46741 * 59.99769 * 1 2 3 27 27 H 1.08997 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47251 * 300.00221 * 1 2 3 29 29 H 1.09009 * 109.46926 * 119.99460 * 2 1 3 30 30 H 1.08994 * 109.47156 * 239.99942 * 2 1 3 31 31 H 1.09003 * 117.49739 * 359.97438 * 5 3 2 32 32 H 1.08994 * 117.50141 * 144.99956 * 5 3 2 33 33 H 0.97005 * 119.99604 * 334.99955 * 8 6 3 34 34 H 1.08995 * 109.59119 * 246.20023 * 12 11 9 35 35 H 1.09003 * 109.58586 * 6.63419 * 12 11 9 36 36 H 1.08999 * 109.63863 * 294.86615 * 13 12 11 37 37 H 1.08997 * 109.45856 * 174.73894 * 13 12 11 38 38 H 1.09004 * 109.45592 * 58.53046 * 14 13 12 39 39 H 1.08998 * 109.46868 * 55.07114 * 15 14 13 40 40 H 1.09000 * 109.46689 * 175.07047 * 15 14 13 41 41 H 0.96999 * 119.99726 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.49646 * 301.41374 * 24 14 13 43 43 H 1.08994 * 109.52399 * 181.33030 * 24 14 13 44 44 H 1.09000 * 109.58432 * 353.37445 * 25 11 9 45 45 H 1.09005 * 109.58316 * 113.79628 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3881 2.1716 0.4810 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6579 0.1187 7 1 4.1803 0.7719 0.1972 8 7 4.0095 2.8284 0.8703 9 6 5.2309 2.8267 1.4400 10 8 5.9152 1.8222 1.4082 11 7 5.6939 3.9385 2.0451 12 6 4.8388 5.1249 2.1868 13 6 4.8113 5.5332 3.6675 14 6 6.2458 5.7299 4.1632 15 6 6.2228 6.1733 5.6274 16 6 5.5739 7.5294 5.7315 17 1 5.2134 8.0253 4.8423 18 6 5.4393 8.1367 6.9620 19 7 5.8778 7.5326 8.0448 20 14 4.6343 9.8173 7.0911 21 1 3.2441 9.7413 6.5746 22 1 4.6122 10.2477 8.5123 23 1 5.4073 10.7994 6.2891 24 6 7.0146 4.4122 4.0415 25 6 7.0652 3.9893 2.5700 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.0104 1.1855 -2.0153 32 1 2.7215 2.9424 -1.5345 33 1 3.4345 3.6048 0.9579 34 1 5.2433 5.9406 1.5875 35 1 3.8285 4.8891 1.8525 36 1 4.3276 4.7520 4.2540 37 1 4.2575 6.4656 3.7768 38 1 6.7367 6.4938 3.5603 39 1 5.6553 5.4527 6.2163 40 1 7.2434 6.2288 6.0062 41 1 5.7834 7.9600 8.9104 42 1 6.5103 3.6416 4.6244 43 1 8.0292 4.5465 4.4165 44 1 7.5243 3.0041 2.4885 45 1 7.6476 4.7143 2.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582059641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:45 Heat of formation + Delta-G solvation = -44.547782 kcal Electronic energy + Delta-G solvation = -22045.942991 eV Core-core repulsion = 18869.488618 eV Total energy + Delta-G solvation = -3176.454373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51205 -39.37190 -38.34089 -35.71838 -34.83269 -33.82372 -32.38605 -31.57670 -29.70849 -26.40799 -24.73981 -24.25681 -23.91894 -22.66145 -21.64821 -21.30398 -20.42755 -19.02926 -18.39100 -17.63717 -16.62074 -16.48410 -16.11126 -15.61785 -15.35198 -15.16608 -15.12272 -14.66044 -14.60175 -14.30934 -13.94628 -13.63667 -13.50142 -13.28673 -12.96656 -12.91777 -12.75728 -12.48481 -12.33170 -12.17335 -12.12964 -12.04199 -11.92484 -11.76505 -11.42146 -11.26317 -11.02147 -10.88584 -10.83988 -10.50696 -9.90147 -9.34472 -8.15158 -6.25057 1.42522 1.44975 1.52407 1.58682 2.01957 2.43797 2.82412 2.96109 3.18545 3.71548 3.87691 3.92051 4.00466 4.05032 4.08976 4.20149 4.29967 4.41040 4.49694 4.51860 4.55939 4.67457 4.79634 4.82824 4.85450 4.91673 4.96763 4.98277 5.10647 5.18497 5.22837 5.29197 5.31802 5.33141 5.38795 5.48260 5.54297 5.57040 5.62790 5.82323 5.90490 5.97368 6.29866 6.91304 6.92128 7.43832 7.50971 8.96766 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.003302 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.520587 B = 8478.287920 C = 9225.514368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.149 4.149 4 H 0.112 0.888 5 C -0.172 4.172 6 C 0.076 3.924 7 H 0.115 0.885 8 N -0.708 5.708 9 C 0.705 3.295 10 O -0.636 6.636 11 N -0.624 5.624 12 C 0.118 3.882 13 C -0.113 4.113 14 C -0.072 4.072 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.266 1.266 24 C -0.122 4.122 25 C 0.137 3.863 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.408 0.592 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.066 0.934 39 H -0.018 1.018 40 H -0.015 1.015 41 H 0.261 0.739 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -9.345 -19.777 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.168 4.168 4 H 0.130 0.870 5 C -0.210 4.210 6 C -0.030 4.030 7 H 0.133 0.867 8 N -0.363 5.363 9 C 0.407 3.593 10 O -0.518 6.518 11 N -0.360 5.360 12 C -0.004 4.004 13 C -0.151 4.151 14 C -0.090 4.090 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.786 3.214 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.161 4.161 25 C 0.014 3.986 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.000 1.000 40 H 0.004 0.996 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.543 -10.019 -19.625 23.633 hybrid contribution -0.330 1.119 1.105 1.607 sum -8.873 -8.900 -18.520 22.382 Atomic orbital electron populations 1.21726 0.94498 1.02108 1.02085 1.21139 0.96722 0.93187 1.02203 1.22981 0.92399 0.99365 1.02082 0.86970 1.23710 1.02080 1.03657 0.91591 1.21571 0.94788 0.89979 0.96706 0.86738 1.44552 1.15854 1.19599 1.56338 1.15942 0.82000 0.82951 0.78387 1.90842 1.59855 1.33700 1.67379 1.47381 1.15175 1.13194 1.60280 1.21916 0.94701 0.87204 0.96599 1.21858 0.97059 1.01359 0.94844 1.21024 0.95593 0.95471 0.96957 1.19020 0.94483 0.94844 0.92130 1.21653 1.38036 1.03579 0.93198 0.91266 1.25994 0.96519 1.01933 0.95739 1.70113 1.48580 1.40356 0.98931 0.85556 0.79433 0.79568 0.76830 1.18867 1.21630 1.19121 1.21928 1.00865 0.97297 0.95991 1.21455 0.81526 1.02396 0.93241 0.91982 0.92103 0.92935 0.92389 0.90890 0.86964 0.87563 0.75272 0.89354 0.88589 0.93974 0.90390 0.91564 0.99972 0.99614 0.93080 0.93957 0.90905 0.90265 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.87 71.98 0.71 -0.95 16 2 C -0.09 -1.27 6.22 30.59 0.19 -1.08 16 3 C -0.15 -2.18 5.66 -10.79 -0.06 -2.24 16 4 H 0.11 1.53 8.07 -2.39 -0.02 1.51 16 5 C -0.17 -2.35 10.10 30.59 0.31 -2.04 16 6 C 0.08 1.53 6.16 44.99 0.28 1.81 16 7 H 0.11 2.85 7.39 -2.38 -0.02 2.83 16 8 N -0.71 -16.03 5.47 -457.81 -2.51 -18.53 16 9 C 0.71 21.53 8.30 179.05 1.49 23.01 16 10 O -0.64 -24.31 15.33 -4.00 -0.06 -24.37 16 11 N -0.62 -17.78 2.97 -836.06 -2.48 -20.26 16 12 C 0.12 2.85 6.42 86.51 0.56 3.41 16 13 C -0.11 -3.73 5.21 30.82 0.16 -3.57 16 14 C -0.07 -2.75 2.10 -10.77 -0.02 -2.78 16 15 C 0.03 1.66 4.45 29.85 0.13 1.79 16 16 C -0.53 -28.50 8.39 25.60 0.21 -28.28 16 17 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 20 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C -0.12 -4.22 5.36 30.67 0.16 -4.05 16 25 C 0.14 4.06 6.44 86.36 0.56 4.61 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16 31 H 0.11 1.30 8.03 -2.39 -0.02 1.28 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 7.12 6.31 -92.70 -0.59 6.54 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 1.74 5.64 -2.39 -0.01 1.73 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.68 6.91 -2.39 -0.02 2.66 16 38 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 39 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.08 2.51 6.99 -2.39 -0.02 2.49 16 45 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -69.82 356.47 2.77 -67.05 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.37 Total: 17.99 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.13 Total: -10.17 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -4.70 Total: -95.66 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.82 2.77 -67.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582059641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.501 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds