Wall clock time and date at job start Tue Mar 31 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47369 * 2 1 4 4 C 1.53008 * 109.47185 * 119.99909 * 2 1 3 5 5 H 1.09005 * 109.48560 * 300.03049 * 4 2 1 6 6 C 1.53085 * 109.48412 * 180.02562 * 4 2 1 7 7 C 1.53170 * 109.16501 * 182.40969 * 6 4 2 8 8 H 1.09003 * 109.53997 * 297.01575 * 7 6 4 9 9 N 1.46904 * 109.54539 * 176.84637 * 7 6 4 10 10 C 1.46896 * 111.00016 * 155.17301 * 9 7 6 11 11 C 1.53002 * 109.47181 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 7.60794 * 157.30596 * 80.67157 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31517 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46754 * 90.00399 * 20 18 16 22 22 H 1.48503 * 109.46996 * 209.99720 * 20 18 16 23 23 H 1.48501 * 109.47356 * 330.00401 * 20 18 16 24 24 C 1.53173 * 109.11537 * 56.93047 * 7 6 4 25 25 C 1.53108 * 109.15591 * 303.15730 * 24 7 6 26 26 O 1.42897 * 109.47896 * 60.05313 * 4 2 1 27 27 H 1.08998 * 109.47541 * 300.00188 * 1 2 3 28 28 H 1.08998 * 109.46739 * 60.00281 * 1 2 3 29 29 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47541 * 239.99812 * 2 1 3 31 31 H 1.08993 * 109.47085 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46602 * 299.99932 * 3 2 1 33 33 H 1.08998 * 109.46942 * 59.99446 * 3 2 1 34 34 H 1.09000 * 109.52794 * 62.49734 * 6 4 2 35 35 H 1.09007 * 109.57324 * 302.34416 * 6 4 2 36 36 H 1.00896 * 110.99668 * 279.12759 * 9 7 6 37 37 H 1.09008 * 109.47165 * 59.99956 * 10 9 7 38 38 H 1.08997 * 109.47437 * 299.99850 * 10 9 7 39 39 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 40 40 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 41 41 H 0.97004 * 119.99775 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.51788 * 62.97026 * 24 7 6 43 43 H 1.09000 * 109.52714 * 183.16048 * 24 7 6 44 44 H 1.08990 * 109.40860 * 297.49056 * 25 24 7 45 45 H 1.08994 * 109.48278 * 177.49474 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6763 -0.2079 2.1395 6 6 3.5708 -0.7209 1.2499 7 6 4.0734 -1.4963 2.4715 8 1 3.7518 -0.9906 3.3820 9 7 5.5405 -1.5659 2.4400 10 6 6.0879 -1.7476 3.7910 11 6 7.6147 -1.8159 3.7177 12 1 7.9102 -2.5995 3.0199 13 6 8.1420 -0.5220 3.2546 14 7 8.5489 0.4758 2.8964 15 6 8.1784 -2.1293 5.1051 16 6 9.6705 -2.3179 5.0101 17 1 10.1672 -2.2233 4.0557 18 6 10.4017 -2.6113 6.1416 19 7 11.7040 -2.7754 6.0588 20 14 9.5429 -2.7743 7.7924 21 1 9.1272 -4.1852 7.9969 22 1 10.4738 -2.3705 8.8767 23 1 8.3450 -1.8969 7.8160 24 6 3.4925 -2.9133 2.4399 25 6 1.9645 -2.8289 2.3912 26 8 1.5648 -2.0689 1.2489 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9349 0.3055 1.2950 35 1 3.9365 -1.1974 0.3403 36 1 5.8545 -2.2981 1.8210 37 1 5.7032 -2.6741 4.2174 38 1 5.7913 -0.9078 4.4193 39 1 7.9589 -1.3034 5.7815 40 1 7.7203 -3.0423 5.4856 41 1 12.2184 -2.9822 6.8548 42 1 3.8556 -3.4361 1.5550 43 1 3.8005 -3.4534 3.3352 44 1 1.5996 -2.3434 3.2962 45 1 1.5469 -3.8334 2.3237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582176154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:30 Heat of formation + Delta-G solvation = -49.855364 kcal Electronic energy + Delta-G solvation = -22020.515488 eV Core-core repulsion = 18843.830961 eV Total energy + Delta-G solvation = -3176.684527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04168 -37.49835 -35.84215 -35.34677 -33.77642 -32.36339 -30.55433 -30.28941 -27.45169 -26.85481 -24.34176 -23.65760 -22.57584 -21.49937 -20.53751 -20.32803 -17.15105 -16.87849 -16.66934 -16.31298 -15.38002 -14.95351 -14.64872 -14.41333 -14.34604 -14.03231 -13.81325 -13.51576 -13.26764 -13.07551 -12.66177 -12.45892 -12.39346 -12.18622 -12.07856 -11.85569 -11.57237 -11.43395 -11.42666 -11.27566 -11.18108 -11.04298 -10.80349 -10.77042 -10.45060 -10.37328 -10.00756 -9.84958 -9.59938 -9.34588 -8.64101 -8.37877 -6.12776 -4.13559 3.23388 3.32653 3.33306 3.50861 3.68294 3.77136 4.00754 4.36006 4.52288 4.55028 4.63600 4.77675 4.80651 4.85549 4.92317 5.05434 5.11710 5.20727 5.21951 5.35404 5.39936 5.41822 5.44831 5.47484 5.57832 5.61975 5.68676 5.70897 5.75288 5.86205 5.89281 5.96088 6.01794 6.08962 6.15462 6.21045 6.26908 6.88690 6.99107 7.05423 7.09806 7.38385 7.61384 8.38408 8.53320 8.90896 9.46941 11.00353 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.003257 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.849122 B = 8594.785972 C = 9200.438850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.056 0.944 6 C -0.138 4.138 7 C 0.088 3.912 8 H 0.077 0.923 9 N -0.686 5.686 10 C 0.064 3.936 11 C 0.019 3.981 12 H 0.104 0.896 13 C 0.252 3.748 14 N -0.470 5.470 15 C -0.005 4.005 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.187 4.187 25 C 0.067 3.933 26 O -0.379 6.379 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.344 0.656 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.025 0.975 40 H 0.032 0.968 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.095 0.552 -8.557 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.207 4.207 4 C 0.038 3.962 5 H 0.074 0.926 6 C -0.176 4.176 7 C -0.023 4.023 8 H 0.095 0.905 9 N -0.315 5.315 10 C -0.066 4.066 11 C -0.003 4.003 12 H 0.122 0.878 13 C -0.065 4.065 14 N -0.147 5.147 15 C -0.044 4.044 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.227 4.227 25 C -0.010 4.010 26 O -0.298 6.298 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.318 2.645 -9.133 25.182 hybrid contribution -0.308 -1.466 1.560 2.163 sum -23.627 1.179 -7.573 24.838 Atomic orbital electron populations 1.21769 0.94760 1.02271 1.01285 1.21080 0.96322 0.95739 0.97394 1.21890 1.01775 0.95024 1.02021 1.22172 0.93016 0.82992 0.98057 0.92632 1.22258 0.94694 1.01967 0.98693 1.21587 0.87811 0.94162 0.98712 0.90477 1.60572 1.07149 1.53149 1.10672 1.22128 0.93481 1.01108 0.89906 1.18950 0.92196 0.87980 1.01132 0.87804 1.28665 0.91838 0.94180 0.91819 1.80978 1.10196 1.12786 1.10727 1.19629 0.97709 0.97235 0.89783 1.21030 0.89825 1.49084 0.96674 0.90774 1.24999 0.94698 0.94434 0.99009 1.69908 1.05869 1.48040 1.29650 0.86815 0.79950 0.78846 0.83927 1.20064 1.21283 1.18873 1.22976 0.97313 0.99121 1.03255 1.22461 0.93719 0.96223 0.88632 1.87898 1.74621 1.23435 1.43837 0.93004 0.92893 0.91910 0.90487 0.91809 0.92225 0.92559 0.89986 0.90977 0.83747 0.93322 0.90545 0.95671 0.95002 0.92544 0.90712 0.90656 0.93366 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.05 37.16 0.34 -0.76 16 2 C -0.09 -0.72 2.72 -90.62 -0.25 -0.96 16 3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 4 C 0.10 0.88 2.22 -26.68 -0.06 0.82 16 5 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 6 C -0.14 -1.36 4.60 -26.60 -0.12 -1.48 16 7 C 0.09 0.89 2.55 -67.53 -0.17 0.71 16 8 H 0.08 0.80 7.80 -51.93 -0.41 0.40 16 9 N -0.69 -8.19 5.96 -106.53 -0.63 -8.83 16 10 C 0.06 0.85 4.85 -3.83 -0.02 0.83 16 11 C 0.02 0.34 2.35 -93.40 -0.22 0.12 16 12 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 13 C 0.25 5.18 13.67 -20.78 -0.28 4.90 16 14 N -0.47 -10.68 18.53 42.13 0.78 -9.90 16 15 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 16 C -0.53 -14.16 9.15 -34.44 -0.32 -14.48 16 17 H 0.07 2.19 7.84 -52.48 -0.41 1.78 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 20 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 24 C -0.19 -1.65 5.40 -26.59 -0.14 -1.79 16 25 C 0.07 0.57 6.84 37.21 0.25 0.82 16 26 O -0.38 -3.83 9.74 -35.23 -0.34 -4.17 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.52 6.49 -51.93 -0.34 0.18 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.86 6.57 -51.93 -0.34 0.52 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.34 3.81 8.44 -39.29 -0.33 3.47 16 37 H 0.05 0.57 7.52 -51.92 -0.39 0.18 16 38 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 39 H 0.03 0.55 7.20 -51.93 -0.37 0.17 16 40 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.07 0.64 7.56 -51.93 -0.39 0.24 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -31.11 358.16 -7.56 -38.67 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.01 Total: -0.38 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.86 Total: -10.39 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.92 Total: -44.97 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.34 Total: -4.17 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.11 -7.56 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582176154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.187 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds