Wall clock time and date at job start Tue Mar 31 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47369 * 2 1 4 4 C 1.53008 * 109.47185 * 119.99909 * 2 1 3 5 5 H 1.09005 * 109.48560 * 300.03049 * 4 2 1 6 6 C 1.53085 * 109.48412 * 180.02562 * 4 2 1 7 7 C 1.53170 * 109.16501 * 182.40969 * 6 4 2 8 8 H 1.09003 * 109.53997 * 297.01575 * 7 6 4 9 9 N 1.46904 * 109.54539 * 176.84637 * 7 6 4 10 10 C 1.46896 * 111.00016 * 155.17301 * 9 7 6 11 11 C 1.53002 * 109.47181 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00230 * 11 10 9 13 13 C 1.47201 * 109.46938 * 65.00082 * 11 10 9 14 14 N 7.60794 * 157.30596 * 80.67157 * 2 1 3 15 15 C 1.53000 * 109.47233 * 184.99855 * 11 10 9 16 16 C 1.50698 * 109.46984 * 175.00062 * 15 11 10 17 17 H 1.08008 * 120.00253 * 0.02562 * 16 15 11 18 18 C 1.37881 * 120.00032 * 180.02562 * 16 15 11 19 19 N 1.31517 * 119.99980 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46754 * 90.00399 * 20 18 16 22 22 H 1.48503 * 109.46996 * 209.99720 * 20 18 16 23 23 H 1.48501 * 109.47356 * 330.00401 * 20 18 16 24 24 C 1.53173 * 109.11537 * 56.93047 * 7 6 4 25 25 C 1.53108 * 109.15591 * 303.15730 * 24 7 6 26 26 O 1.42897 * 109.47896 * 60.05313 * 4 2 1 27 27 H 1.08998 * 109.47541 * 300.00188 * 1 2 3 28 28 H 1.08998 * 109.46739 * 60.00281 * 1 2 3 29 29 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47541 * 239.99812 * 2 1 3 31 31 H 1.08993 * 109.47085 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46602 * 299.99932 * 3 2 1 33 33 H 1.08998 * 109.46942 * 59.99446 * 3 2 1 34 34 H 1.09000 * 109.52794 * 62.49734 * 6 4 2 35 35 H 1.09007 * 109.57324 * 302.34416 * 6 4 2 36 36 H 1.00896 * 110.99668 * 279.12759 * 9 7 6 37 37 H 1.09008 * 109.47165 * 59.99956 * 10 9 7 38 38 H 1.08997 * 109.47437 * 299.99850 * 10 9 7 39 39 H 1.08990 * 109.47170 * 295.00238 * 15 11 10 40 40 H 1.09001 * 109.46952 * 55.00315 * 15 11 10 41 41 H 0.97004 * 119.99775 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.51788 * 62.97026 * 24 7 6 43 43 H 1.09000 * 109.52714 * 183.16048 * 24 7 6 44 44 H 1.08990 * 109.40860 * 297.49056 * 25 24 7 45 45 H 1.08994 * 109.48278 * 177.49474 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6763 -0.2079 2.1395 6 6 3.5708 -0.7209 1.2499 7 6 4.0734 -1.4963 2.4715 8 1 3.7518 -0.9906 3.3820 9 7 5.5405 -1.5659 2.4400 10 6 6.0879 -1.7476 3.7910 11 6 7.6147 -1.8159 3.7177 12 1 7.9102 -2.5995 3.0199 13 6 8.1420 -0.5220 3.2546 14 7 8.5489 0.4758 2.8964 15 6 8.1784 -2.1293 5.1051 16 6 9.6705 -2.3179 5.0101 17 1 10.1672 -2.2233 4.0557 18 6 10.4017 -2.6113 6.1416 19 7 11.7040 -2.7754 6.0588 20 14 9.5429 -2.7743 7.7924 21 1 9.1272 -4.1852 7.9969 22 1 10.4738 -2.3705 8.8767 23 1 8.3450 -1.8969 7.8160 24 6 3.4925 -2.9133 2.4399 25 6 1.9645 -2.8289 2.3912 26 8 1.5648 -2.0689 1.2489 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.9349 0.3055 1.2950 35 1 3.9365 -1.1974 0.3403 36 1 5.8545 -2.2981 1.8210 37 1 5.7032 -2.6741 4.2174 38 1 5.7913 -0.9078 4.4193 39 1 7.9589 -1.3034 5.7815 40 1 7.7203 -3.0423 5.4856 41 1 12.2184 -2.9822 6.8548 42 1 3.8556 -3.4361 1.5550 43 1 3.8005 -3.4534 3.3352 44 1 1.5996 -2.3434 3.2962 45 1 1.5469 -3.8334 2.3237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582176154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:30 Heat of formation + Delta-G solvation = -69.811262 kcal Electronic energy + Delta-G solvation = -22021.380841 eV Core-core repulsion = 18843.830961 eV Total energy + Delta-G solvation = -3177.549880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78065 -38.76569 -36.96607 -36.15081 -35.47063 -34.03545 -31.77780 -30.99508 -28.60617 -27.87998 -25.29982 -24.42422 -23.63339 -23.26209 -21.32752 -21.00599 -18.91778 -18.48289 -17.36579 -17.10985 -16.57911 -16.07936 -15.68079 -15.59193 -15.22627 -15.09146 -14.86584 -14.64591 -14.38985 -14.13087 -14.04476 -13.79497 -13.45716 -13.36178 -13.14892 -12.97988 -12.92346 -12.53303 -12.38650 -12.25971 -12.12787 -12.10802 -11.89421 -11.76535 -11.66809 -11.60243 -11.46084 -11.30582 -10.98648 -10.73322 -10.41831 -9.26345 -8.24992 -6.30740 1.41898 1.45506 1.55534 2.06047 2.13240 2.40813 2.84743 3.08212 3.12346 3.32320 3.81025 3.81916 3.96450 4.13632 4.15213 4.18174 4.23633 4.35317 4.37849 4.44291 4.53463 4.64791 4.68744 4.76126 4.81311 4.82827 4.84072 4.94201 4.97460 5.02821 5.06949 5.11116 5.22444 5.23185 5.27383 5.30851 5.44839 5.45312 5.49647 5.63574 6.08941 6.26248 6.37472 6.50562 6.77134 6.91051 7.33822 8.92063 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028424 B = 0.003257 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.849122 B = 8594.785972 C = 9200.438850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.099 3.901 5 H 0.059 0.941 6 C -0.133 4.133 7 C 0.089 3.911 8 H 0.078 0.922 9 N -0.698 5.698 10 C 0.077 3.923 11 C 0.024 3.976 12 H 0.115 0.885 13 C 0.262 3.738 14 N -0.517 5.517 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.028 0.972 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.950 3.050 21 H -0.256 1.256 22 H -0.296 1.296 23 H -0.237 1.237 24 C -0.180 4.180 25 C 0.063 3.937 26 O -0.393 6.393 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.349 0.651 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.063 0.937 41 H 0.265 0.735 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.102 -0.188 -7.444 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.041 3.959 5 H 0.077 0.923 6 C -0.171 4.171 7 C -0.020 4.020 8 H 0.097 0.903 9 N -0.329 5.329 10 C -0.053 4.053 11 C 0.002 3.998 12 H 0.133 0.867 13 C -0.054 4.054 14 N -0.194 5.194 15 C -0.041 4.041 16 C -0.569 4.569 17 H 0.046 0.954 18 C -0.195 4.195 19 N -0.596 5.596 20 Si 0.773 3.227 21 H -0.180 1.180 22 H -0.223 1.223 23 H -0.160 1.160 24 C -0.219 4.219 25 C -0.014 4.014 26 O -0.312 6.312 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.168 0.832 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.362 1.902 -8.043 27.627 hybrid contribution 0.682 -1.227 1.100 1.784 sum -25.679 0.675 -6.943 26.610 Atomic orbital electron populations 1.21730 0.94138 1.01899 1.01930 1.21087 0.96820 0.95914 0.96744 1.21864 1.01197 0.94730 1.02627 1.22165 0.92331 0.82929 0.98513 0.92343 1.22193 0.95315 1.01294 0.98332 1.21590 0.86582 0.95171 0.98691 0.90332 1.60501 1.08461 1.53758 1.10140 1.21968 0.90001 1.02573 0.90797 1.19075 0.95046 0.86444 0.99206 0.86684 1.29423 0.90676 0.94493 0.90784 1.80974 1.11768 1.14519 1.12145 1.19578 0.93932 0.98565 0.92064 1.21415 0.93047 1.47742 0.94745 0.95370 1.26067 0.95284 0.94280 1.03877 1.70097 1.08138 1.50434 1.30900 0.85669 0.79240 0.80212 0.77622 1.18047 1.22298 1.16010 1.22900 0.97446 0.97996 1.03569 1.22603 0.93512 0.96812 0.88458 1.87890 1.74818 1.23785 1.44732 0.92625 0.91999 0.92742 0.91255 0.92657 0.91382 0.92200 0.90907 0.91867 0.83185 0.90455 0.90588 0.95549 0.91858 0.92668 0.91095 0.89607 0.92558 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 71.98 0.65 -1.29 16 2 C -0.09 -1.34 2.72 -10.79 -0.03 -1.37 16 3 C -0.15 -2.06 8.84 71.98 0.64 -1.43 16 4 C 0.10 1.67 2.22 30.63 0.07 1.73 16 5 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 6 C -0.13 -2.46 4.60 30.68 0.14 -2.32 16 7 C 0.09 1.60 2.55 45.03 0.11 1.72 16 8 H 0.08 1.41 7.80 -2.39 -0.02 1.39 16 9 N -0.70 -15.09 5.96 -490.96 -2.92 -18.02 16 10 C 0.08 1.78 4.85 86.30 0.42 2.20 16 11 C 0.02 0.79 2.35 -12.60 -0.03 0.76 16 12 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 13 C 0.26 10.68 13.67 89.45 1.22 11.90 16 14 N -0.52 -23.69 18.53 20.00 0.37 -23.32 16 15 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 16 C -0.53 -28.56 9.15 25.60 0.23 -28.32 16 17 H 0.03 1.72 7.84 -2.91 -0.02 1.69 16 18 C 0.00 0.08 5.47 84.66 0.46 0.55 16 19 N -0.96 -59.13 13.96 21.45 0.30 -58.83 16 20 Si 0.95 41.14 27.47 68.60 1.88 43.02 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 24 C -0.18 -2.64 5.40 30.69 0.17 -2.47 16 25 C 0.06 0.90 6.84 72.02 0.49 1.39 16 26 O -0.39 -7.23 9.74 -148.98 -1.45 -8.68 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.85 7.68 -2.39 -0.02 0.83 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 0.87 6.49 -2.39 -0.02 0.85 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.48 6.57 -2.39 -0.02 1.46 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.35 6.96 8.44 -89.70 -0.76 6.20 16 37 H 0.08 1.41 7.52 -2.38 -0.02 1.39 16 38 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 39 H 0.03 1.05 7.20 -2.39 -0.02 1.04 16 40 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 43 H 0.09 1.10 7.56 -2.39 -0.02 1.09 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.01 358.16 2.97 -66.04 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.14 Total: 16.73 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.65 Total: -16.95 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -2.25 Total: -100.17 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -1.45 Total: -8.68 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.02 kcal Total: -69.01 2.97 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582176154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.774 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds