Wall clock time and date at job start Tue Mar 31 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 C 1.53006 * 109.46848 * 119.99659 * 2 1 3 5 5 H 1.09007 * 109.48858 * 300.03111 * 4 2 1 6 6 C 1.53091 * 109.47977 * 180.02562 * 4 2 1 7 7 C 1.53180 * 109.16447 * 182.40967 * 6 4 2 8 8 H 1.09000 * 109.54004 * 297.02345 * 7 6 4 9 9 N 1.46891 * 109.54312 * 176.84791 * 7 6 4 10 10 C 1.46905 * 111.00240 * 155.17699 * 9 7 6 11 11 C 1.52997 * 109.47325 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46952 * 54.99956 * 11 10 9 13 13 C 1.47206 * 109.47168 * 294.99733 * 11 10 9 14 14 N 8.21548 * 145.82685 * 148.78657 * 2 1 3 15 15 C 1.53002 * 109.46817 * 175.00015 * 11 10 9 16 16 C 1.50703 * 109.46865 * 184.99692 * 15 11 10 17 17 H 1.08006 * 120.00033 * 0.02562 * 16 15 11 18 18 C 1.37878 * 120.00279 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99526 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00414 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47210 * 59.99590 * 20 18 16 22 22 H 1.48494 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46677 * 299.99864 * 20 18 16 24 24 C 1.53179 * 109.10808 * 56.93164 * 7 6 4 25 25 C 1.53098 * 109.15894 * 303.15259 * 24 7 6 26 26 O 1.42899 * 109.47939 * 60.05930 * 4 2 1 27 27 H 1.09001 * 109.46992 * 60.00644 * 1 2 3 28 28 H 1.09007 * 109.46667 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47149 * 300.00166 * 1 2 3 30 30 H 1.08990 * 109.47888 * 239.99754 * 2 1 3 31 31 H 1.09000 * 109.46907 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47155 * 299.99878 * 3 2 1 33 33 H 1.09003 * 109.47125 * 59.99645 * 3 2 1 34 34 H 1.09000 * 109.52366 * 62.49882 * 6 4 2 35 35 H 1.09001 * 109.57258 * 302.34813 * 6 4 2 36 36 H 1.00899 * 111.00333 * 31.22200 * 9 7 6 37 37 H 1.08998 * 109.46948 * 59.99721 * 10 9 7 38 38 H 1.09000 * 109.46862 * 300.00038 * 10 9 7 39 39 H 1.08997 * 109.47047 * 304.99674 * 15 11 10 40 40 H 1.08997 * 109.47298 * 65.00333 * 15 11 10 41 41 H 0.97002 * 120.00026 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.52134 * 62.97321 * 24 7 6 43 43 H 1.09004 * 109.51825 * 183.15771 * 24 7 6 44 44 H 1.09002 * 109.40979 * 297.49820 * 25 24 7 45 45 H 1.09002 * 109.49440 * 177.50547 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6763 -0.2078 2.1395 6 6 3.5709 -0.7208 1.2499 7 6 4.0735 -1.4963 2.4716 8 1 3.7518 -0.9906 3.3820 9 7 5.5404 -1.5657 2.4401 10 6 6.0880 -1.7475 3.7911 11 6 7.6147 -1.8158 3.7177 12 1 7.9941 -0.9286 3.2107 13 6 8.0168 -3.0181 2.9696 14 7 8.3271 -3.9466 2.3914 15 6 8.1910 -1.8797 5.1336 16 6 9.6954 -1.8232 5.0667 17 1 10.1910 -1.7487 4.1099 18 6 10.4393 -1.8656 6.2268 19 7 9.8358 -1.9558 7.3919 20 14 12.3041 -1.7948 6.1439 21 1 12.7230 -0.5263 5.4953 22 1 12.8633 -1.8557 7.5181 23 1 12.8083 -2.9456 5.3522 24 6 3.4925 -2.9133 2.4399 25 6 1.9646 -2.8289 2.3912 26 8 1.5649 -2.0689 1.2489 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8935 -0.5138 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9349 0.3056 1.2950 35 1 3.9365 -1.1973 0.3403 36 1 5.9318 -0.7473 1.9985 37 1 5.7033 -2.6739 4.2174 38 1 5.7913 -0.9077 4.4194 39 1 7.8211 -1.0351 5.7149 40 1 7.8833 -2.8108 5.6095 41 1 10.3590 -1.9852 8.2081 42 1 3.8556 -3.4360 1.5551 43 1 3.8006 -3.4533 3.3352 44 1 1.5997 -2.3433 3.2963 45 1 1.5468 -3.8334 2.3238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582176155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:35 Heat of formation + Delta-G solvation = -53.714500 kcal Electronic energy + Delta-G solvation = -21964.797643 eV Core-core repulsion = 18787.945771 eV Total energy + Delta-G solvation = -3176.851872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97126 -37.36168 -35.73717 -35.33323 -33.71788 -32.34876 -30.46411 -30.11986 -27.41495 -26.50568 -24.29148 -23.73916 -22.48221 -21.77346 -20.39138 -20.12290 -17.12649 -16.58550 -16.44477 -16.23385 -15.27538 -15.07990 -14.75090 -14.58875 -14.18162 -14.03305 -13.75186 -13.52022 -13.12237 -12.83684 -12.59172 -12.41656 -12.31993 -12.11035 -11.91641 -11.75340 -11.46661 -11.39124 -11.30259 -11.17333 -11.05528 -10.93170 -10.70952 -10.60910 -10.58602 -10.29824 -10.24044 -9.74760 -9.48629 -9.24076 -8.47468 -8.34478 -6.11217 -4.14551 3.29960 3.34307 3.38080 3.55415 3.72803 3.82730 4.06012 4.39774 4.43683 4.62045 4.75735 4.84184 4.88894 4.89348 5.01538 5.06821 5.16953 5.26829 5.30622 5.34381 5.41560 5.45100 5.50556 5.55202 5.60652 5.67870 5.71044 5.76856 5.83052 5.90355 5.94862 6.00870 6.08182 6.11145 6.25965 6.37433 6.47969 7.08981 7.10840 7.39594 7.46130 7.51271 7.83793 8.21264 8.58354 8.89981 9.50979 10.99656 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.002991 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.579837 B = 9359.601422 C = 9562.421063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.149 4.149 4 C 0.099 3.901 5 H 0.056 0.944 6 C -0.153 4.153 7 C 0.088 3.912 8 H 0.045 0.955 9 N -0.688 5.688 10 C 0.066 3.934 11 C 0.010 3.990 12 H 0.099 0.901 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.145 4.145 25 C 0.063 3.937 26 O -0.378 6.378 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.342 0.658 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.275 6.793 -10.606 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.206 4.206 4 C 0.041 3.959 5 H 0.074 0.926 6 C -0.191 4.191 7 C -0.022 4.022 8 H 0.063 0.937 9 N -0.319 5.319 10 C -0.063 4.063 11 C -0.012 4.012 12 H 0.116 0.884 13 C -0.062 4.062 14 N -0.156 5.156 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.184 4.184 25 C -0.014 4.014 26 O -0.297 6.297 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.161 0.839 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.862 4.641 -11.578 22.613 hybrid contribution 1.139 1.305 1.007 2.004 sum -17.723 5.946 -10.571 21.475 Atomic orbital electron populations 1.21767 0.94677 1.02376 1.01266 1.21094 0.96452 0.95644 0.97479 1.21885 1.01513 0.95138 1.02087 1.22088 0.92467 0.83347 0.97994 0.92631 1.22470 0.96175 1.00798 0.99612 1.21495 0.88351 0.95565 0.96771 0.93709 1.60527 1.04619 1.46106 1.20681 1.22122 0.93674 1.01744 0.88804 1.19211 0.93359 0.89915 0.98739 0.88355 1.28886 0.91448 0.94134 0.91743 1.81025 1.10540 1.12073 1.11912 1.19158 0.95934 0.98756 0.86794 1.21109 0.91149 1.51452 0.92829 0.92546 1.24955 0.98723 0.94873 0.95410 1.69929 1.35749 1.49877 0.97512 0.86645 0.85479 0.78799 0.77112 1.20056 1.21177 1.20198 1.22225 0.94969 0.97371 1.03795 1.22581 0.94306 0.96185 0.88320 1.87897 1.74554 1.23204 1.44082 0.92886 0.91831 0.92990 0.90425 0.92025 0.92178 0.92536 0.90707 0.90119 0.83947 0.90576 0.93309 0.94504 0.95584 0.92727 0.90351 0.90842 0.93466 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.05 37.16 0.34 -0.76 16 2 C -0.09 -0.71 2.72 -90.61 -0.25 -0.96 16 3 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 4 C 0.10 0.92 2.22 -26.68 -0.06 0.86 16 5 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 6 C -0.15 -1.45 4.26 -26.59 -0.11 -1.57 16 7 C 0.09 0.97 2.58 -67.53 -0.17 0.79 16 8 H 0.04 0.49 7.80 -51.93 -0.41 0.08 16 9 N -0.69 -8.78 6.01 -106.53 -0.64 -9.42 16 10 C 0.07 0.97 4.85 -3.82 -0.02 0.95 16 11 C 0.01 0.18 2.36 -93.40 -0.22 -0.04 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 C 0.25 5.34 13.67 -20.73 -0.28 5.06 16 14 N -0.48 -10.97 18.54 42.19 0.78 -10.19 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 17 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.15 -1.65 5.63 -26.59 -0.15 -1.80 16 25 C 0.06 0.62 6.84 37.21 0.25 0.88 16 26 O -0.38 -4.14 9.74 -35.23 -0.34 -4.48 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.41 6.49 -51.93 -0.34 0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.34 3.92 8.37 -39.29 -0.33 3.59 16 37 H 0.08 1.16 7.52 -51.93 -0.39 0.77 16 38 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -30.16 361.73 -7.94 -38.10 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.04 Total: -1.64 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.86 Total: -9.33 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.88 Total: -44.37 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.34 Total: -4.48 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.16 -7.94 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582176155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.615 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds