Wall clock time and date at job start Tue Mar 31 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 C 1.53006 * 109.46848 * 119.99659 * 2 1 3 5 5 H 1.09007 * 109.48858 * 300.03111 * 4 2 1 6 6 C 1.53091 * 109.47977 * 180.02562 * 4 2 1 7 7 C 1.53180 * 109.16447 * 182.40967 * 6 4 2 8 8 H 1.09000 * 109.54004 * 297.02345 * 7 6 4 9 9 N 1.46891 * 109.54312 * 176.84791 * 7 6 4 10 10 C 1.46905 * 111.00240 * 155.17699 * 9 7 6 11 11 C 1.52997 * 109.47325 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46952 * 54.99956 * 11 10 9 13 13 C 1.47206 * 109.47168 * 294.99733 * 11 10 9 14 14 N 8.21548 * 145.82685 * 148.78657 * 2 1 3 15 15 C 1.53002 * 109.46817 * 175.00015 * 11 10 9 16 16 C 1.50703 * 109.46865 * 184.99692 * 15 11 10 17 17 H 1.08006 * 120.00033 * 0.02562 * 16 15 11 18 18 C 1.37878 * 120.00279 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99526 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00414 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47210 * 59.99590 * 20 18 16 22 22 H 1.48494 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46677 * 299.99864 * 20 18 16 24 24 C 1.53179 * 109.10808 * 56.93164 * 7 6 4 25 25 C 1.53098 * 109.15894 * 303.15259 * 24 7 6 26 26 O 1.42899 * 109.47939 * 60.05930 * 4 2 1 27 27 H 1.09001 * 109.46992 * 60.00644 * 1 2 3 28 28 H 1.09007 * 109.46667 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47149 * 300.00166 * 1 2 3 30 30 H 1.08990 * 109.47888 * 239.99754 * 2 1 3 31 31 H 1.09000 * 109.46907 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47155 * 299.99878 * 3 2 1 33 33 H 1.09003 * 109.47125 * 59.99645 * 3 2 1 34 34 H 1.09000 * 109.52366 * 62.49882 * 6 4 2 35 35 H 1.09001 * 109.57258 * 302.34813 * 6 4 2 36 36 H 1.00899 * 111.00333 * 31.22200 * 9 7 6 37 37 H 1.08998 * 109.46948 * 59.99721 * 10 9 7 38 38 H 1.09000 * 109.46862 * 300.00038 * 10 9 7 39 39 H 1.08997 * 109.47047 * 304.99674 * 15 11 10 40 40 H 1.08997 * 109.47298 * 65.00333 * 15 11 10 41 41 H 0.97002 * 120.00026 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.52134 * 62.97321 * 24 7 6 43 43 H 1.09004 * 109.51825 * 183.15771 * 24 7 6 44 44 H 1.09002 * 109.40979 * 297.49820 * 25 24 7 45 45 H 1.09002 * 109.49440 * 177.50547 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6763 -0.2078 2.1395 6 6 3.5709 -0.7208 1.2499 7 6 4.0735 -1.4963 2.4716 8 1 3.7518 -0.9906 3.3820 9 7 5.5404 -1.5657 2.4401 10 6 6.0880 -1.7475 3.7911 11 6 7.6147 -1.8158 3.7177 12 1 7.9941 -0.9286 3.2107 13 6 8.0168 -3.0181 2.9696 14 7 8.3271 -3.9466 2.3914 15 6 8.1910 -1.8797 5.1336 16 6 9.6954 -1.8232 5.0667 17 1 10.1910 -1.7487 4.1099 18 6 10.4393 -1.8656 6.2268 19 7 9.8358 -1.9558 7.3919 20 14 12.3041 -1.7948 6.1439 21 1 12.7230 -0.5263 5.4953 22 1 12.8633 -1.8557 7.5181 23 1 12.8083 -2.9456 5.3522 24 6 3.4925 -2.9133 2.4399 25 6 1.9646 -2.8289 2.3912 26 8 1.5649 -2.0689 1.2489 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8935 -0.5138 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9349 0.3056 1.2950 35 1 3.9365 -1.1973 0.3403 36 1 5.9318 -0.7473 1.9985 37 1 5.7033 -2.6739 4.2174 38 1 5.7913 -0.9077 4.4194 39 1 7.8211 -1.0351 5.7149 40 1 7.8833 -2.8108 5.6095 41 1 10.3590 -1.9852 8.2081 42 1 3.8556 -3.4360 1.5551 43 1 3.8006 -3.4533 3.3352 44 1 1.5997 -2.3433 3.2963 45 1 1.5468 -3.8334 2.3238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582176155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:34 Heat of formation + Delta-G solvation = -71.643099 kcal Electronic energy + Delta-G solvation = -21965.575086 eV Core-core repulsion = 18787.945771 eV Total energy + Delta-G solvation = -3177.629314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77649 -38.71716 -36.89260 -36.18210 -35.50042 -33.95313 -31.66494 -31.00274 -28.31158 -27.82656 -25.39375 -24.58831 -23.78064 -23.41032 -21.14588 -20.90643 -18.64095 -18.35867 -17.37762 -17.06615 -16.63347 -16.16606 -16.10522 -15.56647 -15.23221 -15.08918 -14.76135 -14.57869 -14.31555 -14.00120 -13.86626 -13.70671 -13.46622 -13.34820 -13.10966 -12.97415 -12.91089 -12.55161 -12.47910 -12.40000 -12.27092 -12.08660 -11.94607 -11.86981 -11.63223 -11.46287 -11.36898 -11.22589 -10.97844 -10.55668 -10.42929 -9.35312 -8.20139 -6.28453 1.40598 1.42486 1.49417 2.05931 2.12873 2.41006 2.82923 3.08175 3.15468 3.34288 3.67548 3.92283 3.94065 4.11648 4.15674 4.22111 4.29242 4.34987 4.37811 4.42578 4.55475 4.63314 4.72453 4.76289 4.81116 4.83480 4.85428 4.91507 5.01257 5.06067 5.07339 5.13010 5.19704 5.29979 5.32833 5.45853 5.47800 5.50418 5.61179 5.78370 6.05188 6.21147 6.35229 6.53084 6.82505 6.92944 7.40182 8.90581 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.002991 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.579837 B = 9359.601422 C = 9562.421063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.097 3.903 5 H 0.063 0.937 6 C -0.145 4.145 7 C 0.089 3.911 8 H 0.054 0.946 9 N -0.696 5.696 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.121 0.879 13 C 0.265 3.735 14 N -0.516 5.516 15 C 0.039 3.961 16 C -0.540 4.540 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.948 3.052 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.144 4.144 25 C 0.065 3.935 26 O -0.394 6.394 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.352 0.648 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.036 0.964 40 H -0.001 1.001 41 H 0.264 0.736 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.802 8.436 -11.102 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.039 3.961 5 H 0.081 0.919 6 C -0.183 4.183 7 C -0.020 4.020 8 H 0.072 0.928 9 N -0.329 5.329 10 C -0.051 4.051 11 C -0.001 4.001 12 H 0.139 0.861 13 C -0.051 4.051 14 N -0.194 5.194 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.183 4.183 25 C -0.012 4.012 26 O -0.313 6.313 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.172 0.828 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.017 0.983 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.395 6.297 -12.091 23.707 hybrid contribution 1.276 0.774 1.145 1.881 sum -18.119 7.072 -10.946 22.318 Atomic orbital electron populations 1.21741 0.94358 1.01726 1.02019 1.21103 0.96726 0.96318 0.96455 1.21867 1.01571 0.94096 1.02776 1.22215 0.92176 0.82799 0.98897 0.91912 1.22407 0.96388 1.01324 0.98132 1.21530 0.87077 0.95530 0.97911 0.92762 1.60439 1.05865 1.47028 1.19555 1.21906 0.90804 1.02165 0.90193 1.19194 0.95835 0.89517 0.95597 0.86115 1.29434 0.90377 0.94137 0.91120 1.81025 1.11901 1.13251 1.13212 1.18979 0.94373 0.97212 0.89457 1.21538 0.93166 1.50523 0.92619 0.92761 1.25715 1.02827 0.94905 0.95320 1.70024 1.37190 1.51096 0.98029 0.85755 0.80756 0.78938 0.77176 1.18641 1.20724 1.20792 1.22198 0.96222 0.97475 1.02357 1.22608 0.93113 0.96831 0.88618 1.87890 1.74743 1.24096 1.44580 0.91896 0.93161 0.92485 0.91421 0.91894 0.91416 0.91959 0.88969 0.91475 0.82840 0.91544 0.91375 0.94547 0.98263 0.92695 0.92480 0.91562 0.92217 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 71.98 0.65 -1.29 16 2 C -0.09 -1.27 2.72 -10.79 -0.03 -1.30 16 3 C -0.15 -1.62 8.84 71.98 0.64 -0.98 16 4 C 0.10 1.64 2.22 30.63 0.07 1.70 16 5 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 6 C -0.14 -2.49 4.26 30.68 0.13 -2.36 16 7 C 0.09 1.80 2.58 45.04 0.12 1.92 16 8 H 0.05 1.03 7.80 -2.39 -0.02 1.02 16 9 N -0.70 -16.56 6.01 -490.96 -2.95 -19.51 16 10 C 0.08 2.18 4.85 86.30 0.42 2.60 16 11 C 0.02 0.71 2.36 -12.60 -0.03 0.68 16 12 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 13 C 0.27 10.98 13.67 89.43 1.22 12.20 16 14 N -0.52 -23.63 18.54 20.02 0.37 -23.26 16 15 C 0.04 1.76 4.42 29.85 0.13 1.89 16 16 C -0.54 -28.47 8.60 25.60 0.22 -28.25 16 17 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 18 C 0.01 0.62 5.46 84.65 0.46 1.08 16 19 N -0.92 -52.87 13.29 21.45 0.28 -52.58 16 20 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 24 C -0.14 -3.18 5.63 30.69 0.17 -3.01 16 25 C 0.07 1.22 6.84 72.01 0.49 1.71 16 26 O -0.39 -8.19 9.74 -148.98 -1.45 -9.64 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.82 7.68 -2.38 -0.02 0.80 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.68 6.49 -2.39 -0.02 0.67 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 1.27 6.57 -2.39 -0.02 1.26 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.35 7.20 8.37 -89.69 -0.75 6.45 16 37 H 0.07 1.97 7.52 -2.39 -0.02 1.95 16 38 H 0.07 1.64 8.06 -2.39 -0.02 1.62 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 40 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.54 7.56 -2.39 -0.02 1.52 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.91 361.73 3.15 -60.77 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.20 Total: 12.33 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.66 Total: -13.40 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -2.30 Total: -95.36 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.45 Total: -9.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -63.91 3.15 -60.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582176155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.878 kcal (2) G-P(sol) polarization free energy of solvation -63.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds