Wall clock time and date at job start Tue Mar 31 2020 01:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47591 * 2 1 4 4 C 1.53002 * 109.47262 * 120.00485 * 2 1 3 5 5 H 1.09005 * 109.47734 * 300.01833 * 4 2 1 6 6 C 1.53091 * 109.48186 * 179.97438 * 4 2 1 7 7 C 1.53173 * 109.16499 * 182.39603 * 6 4 2 8 8 H 1.08993 * 109.54870 * 176.93706 * 7 6 4 9 9 N 1.46904 * 109.54280 * 297.11468 * 7 6 4 10 10 C 1.46899 * 111.00029 * 205.00063 * 9 7 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47346 * 305.00031 * 11 10 9 13 13 C 1.47201 * 109.47375 * 64.99699 * 11 10 9 14 14 N 6.90744 * 91.54252 * 101.16191 * 2 1 3 15 15 C 1.52997 * 109.47504 * 184.99955 * 11 10 9 16 16 C 1.50691 * 109.47514 * 175.00045 * 15 11 10 17 17 H 1.08007 * 120.00409 * 0.02562 * 16 15 11 18 18 C 1.37880 * 120.00516 * 180.02562 * 16 15 11 19 19 N 1.31513 * 119.99418 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47054 * 59.99934 * 20 18 16 22 22 H 1.48499 * 109.46907 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47014 * 299.99916 * 20 18 16 24 24 C 1.53173 * 109.03745 * 56.97562 * 7 6 4 25 25 C 1.53095 * 109.16837 * 303.02309 * 24 7 6 26 26 O 1.42896 * 109.49221 * 60.04654 * 4 2 1 27 27 H 1.09003 * 109.46591 * 300.00160 * 1 2 3 28 28 H 1.09004 * 109.47144 * 59.99495 * 1 2 3 29 29 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46591 * 239.99840 * 2 1 3 31 31 H 1.09000 * 109.47235 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46879 * 300.00312 * 3 2 1 33 33 H 1.08997 * 109.46605 * 59.99732 * 3 2 1 34 34 H 1.08999 * 109.52046 * 62.48985 * 6 4 2 35 35 H 1.09004 * 109.57054 * 302.33153 * 6 4 2 36 36 H 1.00902 * 111.00190 * 81.03763 * 9 7 6 37 37 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 38 38 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 39 39 H 1.09003 * 109.46810 * 294.99909 * 15 11 10 40 40 H 1.08998 * 109.47247 * 54.99778 * 15 11 10 41 41 H 0.97005 * 119.99823 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.51987 * 62.93020 * 24 7 6 43 43 H 1.09003 * 109.52457 * 183.11301 * 24 7 6 44 44 H 1.09004 * 109.47831 * 297.62685 * 25 24 7 45 45 H 1.08992 * 109.48247 * 177.58854 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6765 -0.2079 2.1393 6 6 3.5709 -0.7220 1.2491 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5484 2.4478 9 7 3.6392 -0.8163 3.6978 10 6 4.5342 -1.1308 4.8194 11 6 4.0512 -0.4046 6.0764 12 1 3.9704 0.6629 5.8710 13 6 2.7336 -0.9294 6.4706 14 7 1.7159 -1.3367 6.7743 15 6 5.0509 -0.6310 7.2122 16 6 4.6405 0.1825 8.4124 17 1 3.7548 0.7992 8.3697 18 6 5.3955 0.1398 9.5653 19 7 6.4737 -0.6115 9.6176 20 14 4.8871 1.1488 11.0529 21 1 3.5327 0.7304 11.4953 22 1 5.8574 0.9289 12.1553 23 1 4.8666 2.5887 10.6907 24 6 3.4915 -2.9138 2.4377 25 6 1.9636 -2.8285 2.3919 26 8 1.5649 -2.0690 1.2490 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.9356 0.3042 1.2936 35 1 3.9358 -1.1992 0.3395 36 1 2.6833 -1.0491 3.9216 37 1 4.5305 -2.2063 4.9966 38 1 5.5464 -0.8057 4.5788 39 1 5.0658 -1.6881 7.4777 40 1 6.0451 -0.3238 6.8878 41 1 7.0048 -0.6419 10.4288 42 1 3.8539 -3.4359 1.5521 43 1 3.7995 -3.4552 3.3322 44 1 1.5994 -2.3424 3.2970 45 1 1.5453 -3.8328 2.3250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582176156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:39 Heat of formation + Delta-G solvation = -51.595021 kcal Electronic energy + Delta-G solvation = -22475.264203 eV Core-core repulsion = 19298.504238 eV Total energy + Delta-G solvation = -3176.759965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15627 -37.35509 -35.77338 -35.15317 -33.79805 -32.33669 -30.22890 -30.12708 -27.29888 -26.32668 -24.61541 -23.78709 -22.89987 -21.83455 -20.39586 -19.46132 -16.89129 -16.71167 -16.45927 -16.22946 -15.58458 -15.11425 -14.55360 -14.46831 -14.40198 -14.00642 -13.47946 -13.26728 -13.08744 -12.85870 -12.62137 -12.34974 -12.32147 -12.09141 -12.01415 -11.80437 -11.61475 -11.35975 -11.32665 -11.20070 -11.04424 -10.97570 -10.77576 -10.67918 -10.57820 -10.29201 -10.18969 -9.56475 -9.40720 -9.26314 -8.47371 -8.37063 -6.11535 -4.14859 3.29909 3.34162 3.37721 3.51385 3.56991 3.63410 4.17114 4.40343 4.52089 4.68776 4.74500 4.76003 4.85341 4.95338 4.96957 5.15486 5.23939 5.26411 5.27471 5.50329 5.51040 5.52899 5.55891 5.61261 5.71813 5.75304 5.75789 5.81088 5.87427 5.92786 5.99825 6.07722 6.12654 6.18926 6.24802 6.34376 6.51182 7.05960 7.18270 7.36164 7.41024 7.50002 7.83168 8.20785 8.35514 8.89385 9.50694 10.99300 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.003503 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.384341 B = 7992.175465 C = 8178.380182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.148 4.148 4 C 0.093 3.907 5 H 0.064 0.936 6 C -0.136 4.136 7 C 0.084 3.916 8 H 0.086 0.914 9 N -0.687 5.687 10 C 0.066 3.934 11 C 0.006 3.994 12 H 0.111 0.889 13 C 0.239 3.761 14 N -0.476 5.476 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.188 4.188 25 C 0.062 3.938 26 O -0.379 6.379 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.336 0.664 37 H 0.035 0.965 38 H 0.092 0.908 39 H 0.024 0.976 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -0.522 -20.310 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.205 4.205 4 C 0.035 3.965 5 H 0.082 0.918 6 C -0.174 4.174 7 C -0.027 4.027 8 H 0.104 0.896 9 N -0.319 5.319 10 C -0.063 4.063 11 C -0.016 4.016 12 H 0.129 0.871 13 C -0.077 4.077 14 N -0.153 5.153 15 C -0.005 4.005 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.227 4.227 25 C -0.015 4.015 26 O -0.299 6.299 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.053 0.947 38 H 0.111 0.889 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.782 -0.665 -20.029 20.857 hybrid contribution 0.139 -0.246 1.410 1.438 sum -5.643 -0.910 -18.619 19.476 Atomic orbital electron populations 1.21776 0.94844 1.02246 1.01321 1.21078 0.96361 0.95763 0.97268 1.21867 1.01474 0.95060 1.02088 1.22170 0.93141 0.82819 0.98332 0.91774 1.22246 0.96066 1.01953 0.97168 1.21614 0.99993 0.90516 0.90547 0.89619 1.60772 1.06494 1.61124 1.03504 1.22128 0.97402 0.97984 0.88834 1.19347 0.85834 1.00395 0.96006 0.87130 1.29417 0.94252 0.92368 0.91668 1.81103 1.13288 1.10635 1.10276 1.19150 0.92910 0.98148 0.90313 1.21106 1.10652 1.27323 0.97497 0.92566 1.24951 0.94847 0.95411 0.98721 1.69928 1.15708 1.39063 1.28336 0.86648 0.78416 0.80769 0.82226 1.20266 1.21175 1.19985 1.22848 0.97239 0.99332 1.03329 1.22492 0.93907 0.96359 0.88731 1.87878 1.74827 1.23654 1.43501 0.92832 0.93005 0.92003 0.90830 0.92020 0.92453 0.92234 0.89687 0.91247 0.84362 0.94698 0.88943 0.95797 0.94202 0.92724 0.90526 0.90794 0.93427 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.05 37.16 0.34 -1.00 16 2 C -0.09 -0.80 2.72 -90.62 -0.25 -1.05 16 3 C -0.15 -1.20 8.84 37.16 0.33 -0.87 16 4 C 0.09 1.00 1.98 -26.68 -0.05 0.95 16 5 H 0.06 0.78 7.38 -51.93 -0.38 0.40 16 6 C -0.14 -1.36 4.69 -26.59 -0.12 -1.48 16 7 C 0.08 0.91 2.89 -67.53 -0.19 0.71 16 8 H 0.09 0.89 7.80 -51.93 -0.41 0.48 16 9 N -0.69 -8.80 5.86 -106.54 -0.62 -9.42 16 10 C 0.07 0.95 4.92 -3.83 -0.02 0.93 16 11 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 12 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 13 C 0.24 4.79 12.98 -20.71 -0.27 4.52 16 14 N -0.48 -10.27 18.55 42.21 0.78 -9.48 16 15 C 0.03 0.76 4.42 -27.89 -0.12 0.64 16 16 C -0.53 -13.98 8.60 -34.44 -0.30 -14.27 16 17 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.19 -1.99 5.72 -26.59 -0.15 -2.14 16 25 C 0.06 0.71 6.59 37.21 0.25 0.95 16 26 O -0.38 -4.58 9.73 -35.23 -0.34 -4.92 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.63 7.69 -51.93 -0.40 0.23 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.48 6.49 -51.93 -0.34 0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.83 6.57 -51.93 -0.34 0.49 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.34 4.64 4.90 -39.29 -0.19 4.45 16 37 H 0.03 0.51 7.43 -51.93 -0.39 0.12 16 38 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.81 7.43 -51.93 -0.39 0.42 16 44 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -28.96 355.19 -7.77 -36.74 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.77 Total: 0.78 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.89 Total: -10.59 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.90 Total: -43.59 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.34 Total: -4.92 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.96 -7.77 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582176156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.857 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds