Wall clock time and date at job start Tue Mar 31 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47591 * 2 1 4 4 C 1.53002 * 109.47262 * 120.00485 * 2 1 3 5 5 H 1.09005 * 109.47734 * 300.01833 * 4 2 1 6 6 C 1.53091 * 109.48186 * 179.97438 * 4 2 1 7 7 C 1.53173 * 109.16499 * 182.39603 * 6 4 2 8 8 H 1.08993 * 109.54870 * 176.93706 * 7 6 4 9 9 N 1.46904 * 109.54280 * 297.11468 * 7 6 4 10 10 C 1.46899 * 111.00029 * 205.00063 * 9 7 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47346 * 305.00031 * 11 10 9 13 13 C 1.47201 * 109.47375 * 64.99699 * 11 10 9 14 14 N 6.90744 * 91.54252 * 101.16191 * 2 1 3 15 15 C 1.52997 * 109.47504 * 184.99955 * 11 10 9 16 16 C 1.50691 * 109.47514 * 175.00045 * 15 11 10 17 17 H 1.08007 * 120.00409 * 0.02562 * 16 15 11 18 18 C 1.37880 * 120.00516 * 180.02562 * 16 15 11 19 19 N 1.31513 * 119.99418 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47054 * 59.99934 * 20 18 16 22 22 H 1.48499 * 109.46907 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47014 * 299.99916 * 20 18 16 24 24 C 1.53173 * 109.03745 * 56.97562 * 7 6 4 25 25 C 1.53095 * 109.16837 * 303.02309 * 24 7 6 26 26 O 1.42896 * 109.49221 * 60.04654 * 4 2 1 27 27 H 1.09003 * 109.46591 * 300.00160 * 1 2 3 28 28 H 1.09004 * 109.47144 * 59.99495 * 1 2 3 29 29 H 1.09001 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46591 * 239.99840 * 2 1 3 31 31 H 1.09000 * 109.47235 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46879 * 300.00312 * 3 2 1 33 33 H 1.08997 * 109.46605 * 59.99732 * 3 2 1 34 34 H 1.08999 * 109.52046 * 62.48985 * 6 4 2 35 35 H 1.09004 * 109.57054 * 302.33153 * 6 4 2 36 36 H 1.00902 * 111.00190 * 81.03763 * 9 7 6 37 37 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 38 38 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 39 39 H 1.09003 * 109.46810 * 294.99909 * 15 11 10 40 40 H 1.08998 * 109.47247 * 54.99778 * 15 11 10 41 41 H 0.97005 * 119.99823 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.51987 * 62.93020 * 24 7 6 43 43 H 1.09003 * 109.52457 * 183.11301 * 24 7 6 44 44 H 1.09004 * 109.47831 * 297.62685 * 25 24 7 45 45 H 1.08992 * 109.48247 * 177.58854 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6765 -0.2079 2.1393 6 6 3.5709 -0.7220 1.2491 7 6 4.0735 -1.4974 2.4707 8 1 5.1620 -1.5484 2.4478 9 7 3.6392 -0.8163 3.6978 10 6 4.5342 -1.1308 4.8194 11 6 4.0512 -0.4046 6.0764 12 1 3.9704 0.6629 5.8710 13 6 2.7336 -0.9294 6.4706 14 7 1.7159 -1.3367 6.7743 15 6 5.0509 -0.6310 7.2122 16 6 4.6405 0.1825 8.4124 17 1 3.7548 0.7992 8.3697 18 6 5.3955 0.1398 9.5653 19 7 6.4737 -0.6115 9.6176 20 14 4.8871 1.1488 11.0529 21 1 3.5327 0.7304 11.4953 22 1 5.8574 0.9289 12.1553 23 1 4.8666 2.5887 10.6907 24 6 3.4915 -2.9138 2.4377 25 6 1.9636 -2.8285 2.3919 26 8 1.5649 -2.0690 1.2490 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.9356 0.3042 1.2936 35 1 3.9358 -1.1992 0.3395 36 1 2.6833 -1.0491 3.9216 37 1 4.5305 -2.2063 4.9966 38 1 5.5464 -0.8057 4.5788 39 1 5.0658 -1.6881 7.4777 40 1 6.0451 -0.3238 6.8878 41 1 7.0048 -0.6419 10.4288 42 1 3.8539 -3.4359 1.5521 43 1 3.7995 -3.4552 3.3322 44 1 1.5994 -2.3424 3.2970 45 1 1.5453 -3.8328 2.3250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582176156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:38 Heat of formation + Delta-G solvation = -68.098192 kcal Electronic energy + Delta-G solvation = -22475.979834 eV Core-core repulsion = 19298.504238 eV Total energy + Delta-G solvation = -3177.475596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04625 -38.72938 -36.89175 -36.10634 -35.53151 -33.96623 -31.47241 -31.04324 -28.21872 -27.79778 -25.55836 -24.68298 -24.28671 -23.53951 -21.16554 -20.35847 -18.57861 -18.26045 -17.52657 -17.20684 -16.67666 -16.60239 -15.95806 -15.47943 -15.24384 -14.89967 -14.85861 -14.46775 -14.36034 -14.20022 -13.91349 -13.59771 -13.48690 -13.20309 -13.10157 -13.04829 -12.90206 -12.69846 -12.50950 -12.48088 -12.32358 -12.12866 -12.05285 -11.95010 -11.72441 -11.49080 -11.40615 -11.20643 -10.96277 -10.55566 -10.27948 -9.40471 -8.20258 -6.28483 1.40685 1.41966 1.49144 1.90069 1.92358 2.40810 2.79727 3.13261 3.14705 3.22877 3.71529 3.84810 3.95109 3.97875 4.08835 4.17954 4.22880 4.34365 4.38967 4.47684 4.49328 4.64805 4.72220 4.77195 4.84324 4.87057 4.92740 4.96369 4.97391 5.04814 5.07692 5.10606 5.14541 5.24893 5.33455 5.46188 5.49217 5.49916 5.61725 5.78321 6.01579 6.20553 6.27430 6.32028 6.72249 6.85989 7.40079 8.90398 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.003503 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.384341 B = 7992.175465 C = 8178.380182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.144 4.144 4 C 0.090 3.910 5 H 0.046 0.954 6 C -0.130 4.130 7 C 0.081 3.919 8 H 0.097 0.903 9 N -0.685 5.685 10 C 0.078 3.922 11 C 0.018 3.982 12 H 0.123 0.877 13 C 0.249 3.751 14 N -0.505 5.505 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.282 1.282 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.182 4.182 25 C 0.060 3.940 26 O -0.390 6.390 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.330 0.670 37 H 0.033 0.967 38 H 0.109 0.891 39 H 0.000 1.000 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.030 0.970 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 0.203 -21.655 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.201 4.201 4 C 0.033 3.967 5 H 0.064 0.936 6 C -0.168 4.168 7 C -0.028 4.028 8 H 0.115 0.885 9 N -0.317 5.317 10 C -0.053 4.053 11 C -0.004 4.004 12 H 0.140 0.860 13 C -0.067 4.067 14 N -0.182 5.182 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.773 3.227 21 H -0.207 1.207 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.222 4.222 25 C -0.017 4.017 26 O -0.309 6.309 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.463 0.070 -21.389 22.075 hybrid contribution 0.007 -0.488 1.803 1.868 sum -5.456 -0.418 -19.586 20.336 Atomic orbital electron populations 1.21762 0.95065 1.01555 1.01682 1.21096 0.96200 0.96367 0.96616 1.21847 1.01832 0.94155 1.02312 1.22246 0.93860 0.82228 0.98367 0.93567 1.22207 0.95210 1.02240 0.97105 1.21730 1.00686 0.90618 0.89811 0.88467 1.60766 1.05832 1.61512 1.03582 1.21984 0.98216 0.97343 0.87711 1.19265 0.83603 1.01537 0.96002 0.85976 1.29793 0.94400 0.91622 0.90887 1.81101 1.14302 1.11701 1.11115 1.18968 0.94032 0.95957 0.90928 1.21531 1.10270 1.27276 0.98835 0.92874 1.25701 0.95019 0.96536 1.01424 1.70021 1.16715 1.40453 1.29068 0.85764 0.77668 0.79960 0.79292 1.20743 1.20692 1.18738 1.22793 0.96437 0.99241 1.03690 1.22522 0.94655 0.96557 0.87929 1.87871 1.75252 1.24242 1.43547 0.93568 0.91544 0.93200 0.90342 0.91408 0.91221 0.93024 0.89180 0.89999 0.85057 0.94874 0.87301 0.98179 0.94411 0.92687 0.89239 0.91258 0.95157 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.05 71.98 0.65 -1.88 16 2 C -0.08 -1.44 2.72 -10.79 -0.03 -1.47 16 3 C -0.14 -2.07 8.84 71.98 0.64 -1.44 16 4 C 0.09 1.85 1.98 30.63 0.06 1.91 16 5 H 0.05 1.11 7.38 -2.38 -0.02 1.09 16 6 C -0.13 -2.30 4.69 30.68 0.14 -2.16 16 7 C 0.08 1.60 2.89 45.03 0.13 1.73 16 8 H 0.10 1.74 7.80 -2.39 -0.02 1.72 16 9 N -0.69 -16.58 5.86 -490.97 -2.88 -19.45 16 10 C 0.08 2.11 4.92 86.30 0.42 2.54 16 11 C 0.02 0.63 2.42 -12.60 -0.03 0.60 16 12 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 13 C 0.25 9.90 12.98 89.43 1.16 11.06 16 14 N -0.50 -21.79 18.55 20.02 0.37 -21.42 16 15 C 0.04 1.82 4.42 29.84 0.13 1.95 16 16 C -0.54 -28.55 8.60 25.60 0.22 -28.33 16 17 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 18 C 0.01 0.67 5.46 84.66 0.46 1.13 16 19 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 20 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.18 -3.56 5.72 30.68 0.18 -3.39 16 25 C 0.06 1.33 6.59 72.01 0.47 1.81 16 26 O -0.39 -9.06 9.73 -148.98 -1.45 -10.51 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.99 7.69 -2.39 -0.02 0.97 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 0.89 6.49 -2.39 -0.02 0.87 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.53 6.57 -2.39 -0.02 1.51 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 36 H 0.33 8.90 4.90 -89.69 -0.44 8.46 16 37 H 0.03 0.92 7.43 -2.39 -0.02 0.90 16 38 H 0.11 2.66 8.06 -2.39 -0.02 2.64 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.43 7.43 -2.39 -0.02 1.41 16 44 H 0.03 0.77 6.43 -2.38 -0.02 0.75 16 45 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -60.93 355.19 3.49 -57.44 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.52 Total: 17.00 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.61 Total: -15.93 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.22 Total: -93.33 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.45 Total: -10.51 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -60.93 3.49 -57.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582176156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.655 kcal (2) G-P(sol) polarization free energy of solvation -60.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds