Wall clock time and date at job start Tue Mar 31 2020 01:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 C 1.53000 * 109.47029 * 119.99761 * 2 1 3 5 5 H 1.09001 * 109.47284 * 59.99994 * 4 2 1 6 6 O 1.42899 * 109.47333 * 300.00133 * 4 2 1 7 7 C 1.52998 * 109.47345 * 179.97438 * 4 2 1 8 8 C 1.52997 * 115.55024 * 325.58559 * 7 4 2 9 9 N 1.46903 * 109.47269 * 179.97438 * 8 7 4 10 10 C 1.46900 * 111.00425 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47557 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.46970 * 304.99717 * 11 10 9 13 13 C 1.47205 * 109.47251 * 64.99350 * 11 10 9 14 14 N 7.69738 * 156.70585 * 175.48631 * 2 1 3 15 15 C 1.52997 * 109.47404 * 184.99766 * 11 10 9 16 16 C 1.50701 * 109.47212 * 174.99684 * 15 11 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 11 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.52998 * 117.49842 * 111.25560 * 7 4 2 25 25 C 1.53007 * 117.49827 * 179.91310 * 7 4 2 26 26 H 1.08994 * 109.47382 * 300.00308 * 1 2 3 27 27 H 1.09002 * 109.46827 * 60.00298 * 1 2 3 28 28 H 1.09002 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47751 * 239.99855 * 2 1 3 30 30 H 1.08998 * 109.47648 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46836 * 299.99696 * 3 2 1 32 32 H 1.09002 * 109.47301 * 59.99742 * 3 2 1 33 33 H 0.96698 * 113.99856 * 300.00226 * 6 4 2 34 34 H 1.09000 * 109.47106 * 59.99998 * 8 7 4 35 35 H 1.09002 * 109.47398 * 299.99391 * 8 7 4 36 36 H 1.00900 * 110.99940 * 56.04184 * 9 8 7 37 37 H 1.09001 * 109.46898 * 59.99249 * 10 9 8 38 38 H 1.09009 * 109.46674 * 299.99940 * 10 9 8 39 39 H 1.09002 * 109.47153 * 54.99686 * 15 11 10 40 40 H 1.09001 * 109.46832 * 294.99876 * 15 11 10 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.08998 * 117.49939 * 215.00365 * 24 7 4 43 43 H 1.09002 * 117.50213 * 0.02562 * 24 7 4 44 44 H 1.08996 * 117.49930 * 359.97438 * 25 7 4 45 45 H 1.08999 * 117.49707 * 145.00183 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 8 1.5636 -0.0476 2.4160 7 6 3.5699 -0.7218 1.2490 8 6 4.2295 -0.8286 -0.1273 9 7 5.6903 -0.8165 0.0275 10 6 6.3588 -0.9171 -1.2767 11 6 7.8754 -0.9021 -1.0751 12 1 8.1579 -0.0142 -0.5092 13 6 8.2838 -2.1067 -0.3341 14 7 8.5999 -3.0345 0.2395 15 6 8.5709 -0.8811 -2.4376 16 6 10.0585 -0.7424 -2.2402 17 1 10.4670 -0.6763 -1.2427 18 6 10.8981 -0.7010 -3.3331 19 7 10.4006 -0.7820 -4.5478 20 14 12.7420 -0.5299 -3.0884 21 1 13.3544 -1.8784 -2.9813 22 1 13.3303 0.1905 -4.2461 23 1 13.0073 0.2345 -1.8432 24 6 4.2768 0.1275 2.3072 25 6 4.2763 -1.3987 2.4254 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8489 0.8740 2.4821 34 1 3.9229 0.0165 -0.7437 35 1 3.9223 -1.7582 -0.6064 36 1 5.9943 -1.5521 0.6477 37 1 6.0665 -0.0727 -1.9009 38 1 6.0666 -1.8474 -1.7640 39 1 8.2017 -0.0377 -3.0211 40 1 8.3597 -1.8098 -2.9677 41 1 10.9913 -0.7525 -5.3167 42 1 5.2118 0.6102 2.0229 43 1 3.6520 0.6863 3.0039 44 1 3.6510 -1.8431 3.1997 45 1 5.2110 -1.9200 2.2188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582301431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:15 Heat of formation + Delta-G solvation = -20.756811 kcal Electronic energy + Delta-G solvation = -22149.280190 eV Core-core repulsion = 18973.857470 eV Total energy + Delta-G solvation = -3175.422719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14706 -37.48645 -36.15805 -34.60082 -34.10600 -33.28113 -31.34581 -28.13266 -27.41668 -26.78151 -24.64544 -22.73204 -22.27442 -21.82483 -20.77361 -19.09808 -17.13582 -16.70542 -16.64521 -16.18213 -15.98382 -15.14444 -14.93632 -14.61358 -13.98467 -13.83908 -13.45554 -13.14541 -13.06524 -12.72647 -12.56150 -12.35567 -12.18740 -12.12514 -12.09157 -11.75978 -11.46210 -11.38456 -11.26405 -11.10710 -11.04629 -10.91970 -10.76981 -10.65501 -10.48960 -10.28932 -10.00147 -9.65883 -9.56334 -9.25146 -8.47653 -8.35184 -6.11613 -4.14802 3.28477 3.35142 3.38503 3.53454 3.58903 3.63126 4.03170 4.20557 4.39983 4.48336 4.63134 4.70039 4.74320 4.77947 4.93762 4.99264 5.09476 5.26536 5.38639 5.39519 5.41678 5.49785 5.60997 5.65093 5.66954 5.69483 5.71225 5.83709 5.85749 5.91223 5.98272 6.08341 6.11029 6.15448 6.25907 6.33014 6.51253 7.05823 7.36250 7.39454 7.41384 7.50357 7.83388 8.20853 8.36674 8.89731 9.50804 10.99268 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.003223 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.779885 B = 8684.883640 C = 9196.729591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C -0.157 4.157 4 C 0.151 3.849 5 H 0.098 0.902 6 O -0.558 6.558 7 C -0.163 4.163 8 C 0.091 3.909 9 N -0.692 5.692 10 C 0.068 3.932 11 C 0.007 3.993 12 H 0.111 0.889 13 C 0.240 3.760 14 N -0.476 5.476 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.154 4.154 25 C -0.169 4.169 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.372 0.628 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.338 0.662 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.507 4.552 8.940 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.214 4.214 4 C 0.091 3.909 5 H 0.116 0.884 6 O -0.364 6.364 7 C -0.164 4.164 8 C -0.038 4.038 9 N -0.324 5.324 10 C -0.062 4.062 11 C -0.015 4.015 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.153 5.153 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.191 4.191 25 C -0.206 4.206 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.213 3.264 9.749 21.790 hybrid contribution 1.190 -0.098 -0.640 1.355 sum -18.023 3.166 9.110 20.441 Atomic orbital electron populations 1.21757 0.94736 1.01724 1.01832 1.21789 0.96424 0.97447 0.98928 1.21964 1.02343 0.95336 1.01717 1.21307 0.89109 0.96088 0.84367 0.88436 1.86560 1.76587 1.29215 1.44084 1.22317 0.94433 1.07882 0.91742 1.21502 0.87548 1.00685 0.94075 1.60644 1.05039 1.53324 1.13390 1.22069 0.92615 1.01431 0.90115 1.19331 0.93444 0.89707 0.99021 0.87147 1.29326 0.92028 0.94299 0.91965 1.81027 1.09812 1.12371 1.12111 1.19160 0.95016 0.98745 0.87678 1.21142 0.91415 1.51083 0.92846 0.92514 1.24953 0.98929 0.94917 0.95170 1.69936 1.35305 1.50007 0.97769 0.86590 0.85363 0.78275 0.77847 1.20689 1.21068 1.19700 1.22992 1.02633 0.93523 0.99968 1.22953 1.01891 0.96110 0.99674 0.92170 0.92835 0.92930 0.90134 0.90985 0.92457 0.92911 0.77841 0.89533 0.95000 0.84298 0.89022 0.94727 0.94199 0.95785 0.92785 0.87146 0.89258 0.88965 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.05 37.15 0.34 -0.71 16 2 C -0.13 -0.96 2.26 -90.62 -0.20 -1.17 16 3 C -0.16 -1.13 8.29 37.16 0.31 -0.82 16 4 C 0.15 1.29 3.04 -26.73 -0.08 1.21 16 5 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 6 O -0.56 -4.97 11.78 -35.23 -0.42 -5.39 16 7 C -0.16 -1.53 1.56 -154.51 -0.24 -1.77 16 8 C 0.09 0.95 4.50 -3.82 -0.02 0.93 16 9 N -0.69 -8.61 5.41 -113.78 -0.62 -9.22 16 10 C 0.07 0.96 5.12 -3.83 -0.02 0.94 16 11 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 12 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 13 C 0.24 4.80 12.98 -20.77 -0.27 4.54 16 14 N -0.48 -10.29 18.54 42.14 0.78 -9.51 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 16 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 17 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.15 -1.47 9.12 -26.69 -0.24 -1.71 16 25 C -0.17 -1.76 9.54 -26.69 -0.25 -2.01 16 26 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.63 6.96 -51.93 -0.36 0.27 16 30 H 0.07 0.58 5.64 -51.93 -0.29 0.29 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.34 6.78 -51.93 -0.35 -0.01 16 33 H 0.37 2.54 5.85 45.56 0.27 2.80 16 34 H 0.09 0.85 5.33 -51.93 -0.28 0.57 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.34 4.52 5.70 -39.29 -0.22 4.30 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.11 1.19 7.58 -51.93 -0.39 0.80 16 43 H 0.09 0.74 6.38 -51.93 -0.33 0.41 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.06 6.35 -51.93 -0.33 0.73 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -29.08 355.94 -7.48 -36.55 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.88 Total: 3.31 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.43 Total: -12.67 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.90 Total: -43.39 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.42 Total: -5.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.08 -7.48 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582301431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.798 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds