Wall clock time and date at job start Tue Mar 31 2020 01:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 C 1.53000 * 109.47029 * 119.99761 * 2 1 3 5 5 H 1.09001 * 109.47284 * 59.99994 * 4 2 1 6 6 O 1.42899 * 109.47333 * 300.00133 * 4 2 1 7 7 C 1.52998 * 109.47345 * 179.97438 * 4 2 1 8 8 C 1.52997 * 115.55024 * 325.58559 * 7 4 2 9 9 N 1.46903 * 109.47269 * 179.97438 * 8 7 4 10 10 C 1.46900 * 111.00425 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47557 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.46970 * 304.99717 * 11 10 9 13 13 C 1.47205 * 109.47251 * 64.99350 * 11 10 9 14 14 N 7.69738 * 156.70585 * 175.48631 * 2 1 3 15 15 C 1.52997 * 109.47404 * 184.99766 * 11 10 9 16 16 C 1.50701 * 109.47212 * 174.99684 * 15 11 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 11 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 11 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47094 * 90.00289 * 20 18 16 22 22 H 1.48505 * 109.47195 * 210.00171 * 20 18 16 23 23 H 1.48493 * 109.47449 * 330.00136 * 20 18 16 24 24 C 1.52998 * 117.49842 * 111.25560 * 7 4 2 25 25 C 1.53007 * 117.49827 * 179.91310 * 7 4 2 26 26 H 1.08994 * 109.47382 * 300.00308 * 1 2 3 27 27 H 1.09002 * 109.46827 * 60.00298 * 1 2 3 28 28 H 1.09002 * 109.47456 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47751 * 239.99855 * 2 1 3 30 30 H 1.08998 * 109.47648 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46836 * 299.99696 * 3 2 1 32 32 H 1.09002 * 109.47301 * 59.99742 * 3 2 1 33 33 H 0.96698 * 113.99856 * 300.00226 * 6 4 2 34 34 H 1.09000 * 109.47106 * 59.99998 * 8 7 4 35 35 H 1.09002 * 109.47398 * 299.99391 * 8 7 4 36 36 H 1.00900 * 110.99940 * 56.04184 * 9 8 7 37 37 H 1.09001 * 109.46898 * 59.99249 * 10 9 8 38 38 H 1.09009 * 109.46674 * 299.99940 * 10 9 8 39 39 H 1.09002 * 109.47153 * 54.99686 * 15 11 10 40 40 H 1.09001 * 109.46832 * 294.99876 * 15 11 10 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.08998 * 117.49939 * 215.00365 * 24 7 4 43 43 H 1.09002 * 117.50213 * 0.02562 * 24 7 4 44 44 H 1.08996 * 117.49930 * 359.97438 * 25 7 4 45 45 H 1.08999 * 117.49707 * 145.00183 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 8 1.5636 -0.0476 2.4160 7 6 3.5699 -0.7218 1.2490 8 6 4.2295 -0.8286 -0.1273 9 7 5.6903 -0.8165 0.0275 10 6 6.3588 -0.9171 -1.2767 11 6 7.8754 -0.9021 -1.0751 12 1 8.1579 -0.0142 -0.5092 13 6 8.2838 -2.1067 -0.3341 14 7 8.5999 -3.0345 0.2395 15 6 8.5709 -0.8811 -2.4376 16 6 10.0585 -0.7424 -2.2402 17 1 10.4670 -0.6763 -1.2427 18 6 10.8981 -0.7010 -3.3331 19 7 10.4006 -0.7820 -4.5478 20 14 12.7420 -0.5299 -3.0884 21 1 13.3544 -1.8784 -2.9813 22 1 13.3303 0.1905 -4.2461 23 1 13.0073 0.2345 -1.8432 24 6 4.2768 0.1275 2.3072 25 6 4.2763 -1.3987 2.4254 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8489 0.8740 2.4821 34 1 3.9229 0.0165 -0.7437 35 1 3.9223 -1.7582 -0.6064 36 1 5.9943 -1.5521 0.6477 37 1 6.0665 -0.0727 -1.9009 38 1 6.0666 -1.8474 -1.7640 39 1 8.2017 -0.0377 -3.0211 40 1 8.3597 -1.8098 -2.9677 41 1 10.9913 -0.7525 -5.3167 42 1 5.2118 0.6102 2.0229 43 1 3.6520 0.6863 3.0039 44 1 3.6510 -1.8431 3.1997 45 1 5.2110 -1.9200 2.2188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582301431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:14 Heat of formation + Delta-G solvation = -38.334721 kcal Electronic energy + Delta-G solvation = -22150.042425 eV Core-core repulsion = 18973.857470 eV Total energy + Delta-G solvation = -3176.184955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90262 -38.81508 -37.19209 -35.91083 -35.14332 -34.68347 -32.93692 -29.19939 -28.09579 -27.98857 -25.87945 -23.88213 -23.58559 -23.14902 -21.41825 -19.86904 -18.60648 -18.27809 -17.66149 -17.17352 -16.84382 -16.61358 -15.97183 -15.67119 -15.24768 -14.83308 -14.66457 -14.43201 -14.19279 -13.94624 -13.87204 -13.56646 -13.30184 -13.13003 -13.06693 -12.86687 -12.76888 -12.71192 -12.47335 -12.34691 -12.17554 -12.06258 -12.01223 -11.70090 -11.56231 -11.47510 -11.34952 -11.08831 -10.74274 -10.56013 -10.39421 -9.37065 -8.20069 -6.28123 1.39550 1.41821 1.51002 1.92578 1.94799 2.40992 2.84780 3.10451 3.15131 3.24248 3.48065 3.77562 3.90700 3.98778 4.08330 4.12285 4.19651 4.29064 4.38667 4.44498 4.66961 4.68193 4.78223 4.85584 4.87222 4.90496 4.94641 4.96976 5.00468 5.08439 5.11366 5.18802 5.23436 5.29596 5.45347 5.46999 5.50424 5.56009 5.62203 5.78924 6.01332 6.20955 6.30176 6.73711 6.81465 6.86781 7.40464 8.90803 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028600 B = 0.003223 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.779885 B = 8684.883640 C = 9196.729591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C -0.154 4.154 4 C 0.156 3.844 5 H 0.092 0.908 6 O -0.566 6.566 7 C -0.152 4.152 8 C 0.091 3.909 9 N -0.688 5.688 10 C 0.078 3.922 11 C 0.019 3.981 12 H 0.123 0.877 13 C 0.250 3.750 14 N -0.505 5.505 15 C 0.039 3.961 16 C -0.539 4.539 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.285 1.285 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.147 4.147 25 C -0.181 4.181 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.382 0.618 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.332 0.668 37 H 0.108 0.892 38 H 0.031 0.969 39 H 0.038 0.962 40 H -0.001 1.001 41 H 0.264 0.736 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.293 5.635 9.473 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.211 4.211 4 C 0.096 3.904 5 H 0.109 0.891 6 O -0.374 6.374 7 C -0.153 4.153 8 C -0.038 4.038 9 N -0.320 5.320 10 C -0.052 4.052 11 C -0.003 4.003 12 H 0.141 0.859 13 C -0.066 4.066 14 N -0.183 5.183 15 C 0.000 4.000 16 C -0.577 4.577 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.773 3.227 21 H -0.211 1.211 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.183 4.183 25 C -0.218 4.218 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.110 0.890 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.007 4.360 10.295 22.919 hybrid contribution 1.407 -0.442 -0.784 1.670 sum -18.600 3.919 9.511 21.255 Atomic orbital electron populations 1.21735 0.94431 1.01678 1.01996 1.21748 0.96623 0.97619 0.98213 1.21940 1.01802 0.95045 1.02348 1.21239 0.88249 0.96049 0.84854 0.89058 1.86548 1.76638 1.30046 1.44175 1.22262 0.94901 1.07219 0.90872 1.21575 0.86112 1.01156 0.94922 1.60636 1.06251 1.52991 1.12125 1.21918 0.89995 1.02046 0.91207 1.19243 0.95596 0.89275 0.96152 0.85887 1.29703 0.91170 0.94240 0.91448 1.81027 1.10856 1.13323 1.13102 1.18983 0.93778 0.97241 0.90009 1.21559 0.93438 1.50158 0.92588 0.92837 1.25702 1.02920 0.95000 0.95117 1.70026 1.36636 1.51215 0.98397 0.85711 0.80769 0.78005 0.78216 1.21086 1.20330 1.18833 1.22978 1.02394 0.92866 1.00104 1.22919 1.01594 0.96780 1.00509 0.92425 0.92225 0.93120 0.90258 0.91688 0.92167 0.92032 0.76752 0.88381 0.95068 0.84901 0.87373 0.95082 0.94385 0.98218 0.92706 0.88168 0.87775 0.88969 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 71.98 0.65 -1.16 16 2 C -0.12 -1.63 2.26 -10.80 -0.02 -1.66 16 3 C -0.15 -1.87 8.29 71.98 0.60 -1.27 16 4 C 0.16 2.41 3.04 30.59 0.09 2.51 16 5 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 6 O -0.57 -8.99 11.78 -148.98 -1.76 -10.75 16 7 C -0.15 -2.61 1.56 -52.18 -0.08 -2.70 16 8 C 0.09 1.74 4.50 86.30 0.39 2.13 16 9 N -0.69 -16.14 5.41 -513.88 -2.78 -18.92 16 10 C 0.08 2.12 5.12 86.30 0.44 2.56 16 11 C 0.02 0.67 2.42 -12.60 -0.03 0.64 16 12 H 0.12 4.05 8.14 -2.38 -0.02 4.03 16 13 C 0.25 9.89 12.98 89.45 1.16 11.05 16 14 N -0.51 -21.76 18.54 20.00 0.37 -21.39 16 15 C 0.04 1.76 4.42 29.85 0.13 1.89 16 16 C -0.54 -28.38 8.60 25.60 0.22 -28.16 16 17 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 18 C 0.01 0.63 5.46 84.66 0.46 1.10 16 19 N -0.92 -52.69 13.29 21.45 0.28 -52.40 16 20 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 C -0.15 -2.56 9.12 30.62 0.28 -2.28 16 25 C -0.18 -3.61 9.54 30.62 0.29 -3.32 16 26 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 1.09 6.96 -2.39 -0.02 1.07 16 30 H 0.06 0.89 5.64 -2.39 -0.01 0.88 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.63 6.78 -2.39 -0.02 0.62 16 33 H 0.38 4.30 5.85 -74.06 -0.43 3.87 16 34 H 0.10 1.69 5.33 -2.39 -0.01 1.68 16 35 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.33 8.60 5.70 -89.69 -0.51 8.09 16 37 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.10 2.00 7.58 -2.39 -0.02 1.99 16 43 H 0.10 1.50 6.38 -2.39 -0.02 1.48 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.78 6.35 -2.39 -0.02 1.77 16 Total: -1.00 -60.88 355.94 2.77 -58.10 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.04 Total: 18.73 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 4.58 Total: -18.67 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -2.12 Total: -92.71 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.76 Total: -10.75 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -60.88 2.77 -58.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582301431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.768 kcal (2) G-P(sol) polarization free energy of solvation -60.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds