Wall clock time and date at job start Tue Mar 31 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 6 6 O 1.42902 * 109.47296 * 65.00043 * 4 2 1 7 7 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 8 8 C 1.52999 * 115.55037 * 34.33607 * 7 4 2 9 9 N 1.46893 * 109.47303 * 180.02562 * 8 7 4 10 10 C 1.46904 * 111.00194 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47547 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47395 * 54.99576 * 11 10 9 13 13 C 1.47197 * 109.47028 * 294.99937 * 11 10 9 14 14 N 7.69667 * 152.74302 * 180.72324 * 2 1 3 15 15 C 1.52994 * 109.47579 * 174.99824 * 11 10 9 16 16 C 1.50700 * 109.47425 * 184.99826 * 15 11 10 17 17 H 1.08002 * 120.00076 * 0.02562 * 16 15 11 18 18 C 1.37885 * 120.00144 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99300 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47097 * 60.00188 * 20 18 16 22 22 H 1.48498 * 109.47390 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47129 * 300.00636 * 20 18 16 24 24 C 1.52999 * 117.50237 * 248.62311 * 7 4 2 25 25 C 1.53000 * 60.00080 * 252.50968 * 24 7 4 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 0.96702 * 114.00205 * 59.99480 * 6 4 2 34 34 H 1.09007 * 109.46851 * 299.99915 * 8 7 4 35 35 H 1.08995 * 109.47443 * 59.99437 * 8 7 4 36 36 H 1.00897 * 111.00379 * 303.94581 * 9 8 7 37 37 H 1.09005 * 109.46932 * 299.99587 * 10 9 8 38 38 H 1.09001 * 109.46998 * 59.99336 * 10 9 8 39 39 H 1.09002 * 109.47141 * 304.99849 * 15 11 10 40 40 H 1.09000 * 109.47251 * 64.99560 * 15 11 10 41 41 H 0.97009 * 119.99232 * 180.02562 * 19 18 16 42 42 H 1.08994 * 117.49847 * 359.97438 * 24 7 4 43 43 H 1.08998 * 117.49830 * 145.02067 * 24 7 4 44 44 H 1.08999 * 117.50054 * 252.50478 * 25 24 7 45 45 H 1.09003 * 117.51686 * 107.48174 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6054 -1.7198 -1.2951 6 8 1.6621 0.0166 -2.4130 7 6 3.5648 -0.8310 -1.1878 8 6 4.1572 -1.0203 0.2101 9 7 5.6203 -1.1084 0.1141 10 6 6.2249 -1.2903 1.4406 11 6 7.7459 -1.3782 1.3001 12 1 8.1135 -0.4986 0.7718 13 6 8.0994 -2.5893 0.5418 14 7 8.3720 -3.5247 -0.0445 15 6 8.3836 -1.4422 2.6894 16 6 9.8842 -1.4051 2.5556 17 1 10.3377 -1.3417 1.5775 18 6 10.6781 -1.4510 3.6820 19 7 10.1257 -1.5276 4.8731 20 14 12.5381 -1.4056 3.5162 21 1 12.9444 -0.1464 2.8419 22 1 13.1570 -1.4676 4.8646 23 1 12.9916 -2.5673 2.7099 24 6 4.3734 -0.0079 -2.1927 25 6 4.2706 -1.5259 -2.3540 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 2.0142 0.9169 -2.4396 34 1 3.8851 -0.1717 0.8379 35 1 3.7656 -1.9376 0.6495 36 1 5.8976 -1.8475 -0.5143 37 1 5.9668 -0.4435 2.0767 38 1 5.8480 -2.2096 1.8887 39 1 8.0504 -0.5900 3.2817 40 1 8.0856 -2.3669 3.1837 41 1 10.6843 -1.5595 5.6655 42 1 3.8190 0.6114 -2.8977 43 1 5.3275 0.3991 -1.8578 44 1 5.1570 -2.1175 -2.1254 45 1 3.6485 -1.9052 -3.1648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582301432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:18 Heat of formation + Delta-G solvation = -21.692259 kcal Electronic energy + Delta-G solvation = -22130.215318 eV Core-core repulsion = 18954.752034 eV Total energy + Delta-G solvation = -3175.463284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13061 -37.48697 -36.16319 -34.58868 -34.09072 -33.28050 -31.34579 -28.10490 -27.47075 -26.77165 -24.64273 -22.73687 -22.27187 -21.82402 -20.78310 -19.09122 -17.14002 -16.70382 -16.65724 -16.18354 -15.98222 -15.13288 -14.91112 -14.61190 -13.98702 -13.83706 -13.46723 -13.13843 -13.06996 -12.70439 -12.55741 -12.33676 -12.21293 -12.13745 -12.09491 -11.76519 -11.49818 -11.38607 -11.26617 -11.11841 -11.03688 -10.91653 -10.76984 -10.66411 -10.49708 -10.29198 -9.99852 -9.65840 -9.56001 -9.26310 -8.47162 -8.35454 -6.11426 -4.14689 3.29945 3.34241 3.37801 3.52803 3.58233 3.62970 4.03351 4.20067 4.40033 4.48097 4.62876 4.69911 4.74250 4.77879 4.93693 4.98967 5.09590 5.26589 5.38201 5.39298 5.41114 5.49973 5.60537 5.64689 5.67191 5.69869 5.70570 5.82825 5.85412 5.90836 5.98006 6.07375 6.10856 6.13113 6.25849 6.32943 6.51214 7.05752 7.36253 7.39387 7.41316 7.50386 7.83351 8.20935 8.36765 8.89573 9.50807 10.99414 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028410 B = 0.003216 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.342410 B = 8704.818180 C = 9210.832342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.155 4.155 4 C 0.151 3.849 5 H 0.098 0.902 6 O -0.558 6.558 7 C -0.164 4.164 8 C 0.093 3.907 9 N -0.692 5.692 10 C 0.068 3.932 11 C 0.007 3.993 12 H 0.111 0.889 13 C 0.240 3.760 14 N -0.476 5.476 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.154 4.154 25 C -0.169 4.169 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.373 0.627 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.338 0.662 37 H 0.092 0.908 38 H 0.035 0.965 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.776 6.145 -9.558 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.212 4.212 4 C 0.091 3.909 5 H 0.116 0.884 6 O -0.365 6.365 7 C -0.164 4.164 8 C -0.036 4.036 9 N -0.324 5.324 10 C -0.062 4.062 11 C -0.015 4.015 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.153 5.153 15 C -0.006 4.006 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.191 4.191 25 C -0.206 4.206 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.222 0.778 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.541 4.852 -10.387 21.799 hybrid contribution 1.158 -0.183 0.673 1.352 sum -17.383 4.668 -9.714 20.453 Atomic orbital electron populations 1.21778 0.94782 1.01715 1.01854 1.21803 0.96400 0.97432 0.98998 1.21909 1.02124 0.95405 1.01797 1.21311 0.89985 0.95109 0.84454 0.88408 1.86559 1.76693 1.30043 1.43225 1.22325 0.94252 1.07848 0.92008 1.21448 0.87590 1.00587 0.93998 1.60643 1.07642 1.52302 1.11812 1.22070 0.93062 1.01217 0.89882 1.19327 0.93905 0.89531 0.98714 0.87148 1.29382 0.91958 0.94362 0.91944 1.81086 1.09808 1.12183 1.12254 1.19154 0.95437 0.98768 0.87205 1.21108 0.91031 1.51559 0.92874 0.92563 1.24953 0.98848 0.94866 0.95279 1.69933 1.35594 1.49886 0.97617 0.86648 0.85391 0.78802 0.77209 1.19987 1.21175 1.20273 1.22980 1.02059 0.93706 1.00375 1.22941 1.02228 0.95983 0.99465 0.92912 0.92206 0.92801 0.90037 0.92395 0.91276 0.92800 0.77801 0.89724 0.94973 0.84290 0.89017 0.94721 0.94207 0.95781 0.92727 0.89255 0.87143 0.89004 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.09 37.16 0.34 -0.72 16 2 C -0.13 -0.97 2.25 -90.62 -0.20 -1.17 16 3 C -0.16 -1.11 8.28 37.16 0.31 -0.80 16 4 C 0.15 1.30 2.99 -26.74 -0.08 1.22 16 5 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 6 O -0.56 -5.00 11.93 -35.23 -0.42 -5.42 16 7 C -0.16 -1.54 1.63 -154.51 -0.25 -1.79 16 8 C 0.09 0.97 4.52 -3.83 -0.02 0.95 16 9 N -0.69 -8.62 5.41 -113.78 -0.62 -9.24 16 10 C 0.07 0.96 5.12 -3.82 -0.02 0.94 16 11 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 12 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 13 C 0.24 4.80 12.98 -20.73 -0.27 4.54 16 14 N -0.48 -10.31 18.54 42.20 0.78 -9.53 16 15 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 16 C -0.53 -13.97 8.60 -34.44 -0.30 -14.26 16 17 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.15 -1.47 9.13 -26.73 -0.24 -1.72 16 25 C -0.17 -1.76 9.54 -26.73 -0.26 -2.02 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.64 6.63 -51.93 -0.34 0.30 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.54 6.21 -51.93 -0.32 0.22 16 32 H 0.05 0.34 6.72 -51.93 -0.35 -0.01 16 33 H 0.37 2.56 5.71 45.56 0.26 2.82 16 34 H 0.08 0.83 5.64 -51.92 -0.29 0.54 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.34 4.53 5.70 -39.29 -0.22 4.30 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.09 0.74 6.38 -51.93 -0.33 0.41 16 43 H 0.11 1.19 7.58 -51.93 -0.39 0.80 16 44 H 0.09 1.06 6.35 -51.93 -0.33 0.73 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -29.11 356.65 -7.52 -36.62 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.92 Total: 3.32 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.44 Total: -12.67 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.90 Total: -43.45 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.42 Total: -5.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.11 -7.52 -36.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582301432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.930 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds