Wall clock time and date at job start Tue Mar 31 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 6 6 O 1.42902 * 109.47296 * 65.00043 * 4 2 1 7 7 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 8 8 C 1.52999 * 115.55037 * 34.33607 * 7 4 2 9 9 N 1.46893 * 109.47303 * 180.02562 * 8 7 4 10 10 C 1.46904 * 111.00194 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47547 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47395 * 54.99576 * 11 10 9 13 13 C 1.47197 * 109.47028 * 294.99937 * 11 10 9 14 14 N 7.69667 * 152.74302 * 180.72324 * 2 1 3 15 15 C 1.52994 * 109.47579 * 174.99824 * 11 10 9 16 16 C 1.50700 * 109.47425 * 184.99826 * 15 11 10 17 17 H 1.08002 * 120.00076 * 0.02562 * 16 15 11 18 18 C 1.37885 * 120.00144 * 179.97438 * 16 15 11 19 19 N 1.31517 * 119.99300 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47097 * 60.00188 * 20 18 16 22 22 H 1.48498 * 109.47390 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47129 * 300.00636 * 20 18 16 24 24 C 1.52999 * 117.50237 * 248.62311 * 7 4 2 25 25 C 1.53000 * 60.00080 * 252.50968 * 24 7 4 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 0.96702 * 114.00205 * 59.99480 * 6 4 2 34 34 H 1.09007 * 109.46851 * 299.99915 * 8 7 4 35 35 H 1.08995 * 109.47443 * 59.99437 * 8 7 4 36 36 H 1.00897 * 111.00379 * 303.94581 * 9 8 7 37 37 H 1.09005 * 109.46932 * 299.99587 * 10 9 8 38 38 H 1.09001 * 109.46998 * 59.99336 * 10 9 8 39 39 H 1.09002 * 109.47141 * 304.99849 * 15 11 10 40 40 H 1.09000 * 109.47251 * 64.99560 * 15 11 10 41 41 H 0.97009 * 119.99232 * 180.02562 * 19 18 16 42 42 H 1.08994 * 117.49847 * 359.97438 * 24 7 4 43 43 H 1.08998 * 117.49830 * 145.02067 * 24 7 4 44 44 H 1.08999 * 117.50054 * 252.50478 * 25 24 7 45 45 H 1.09003 * 117.51686 * 107.48174 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6054 -1.7198 -1.2951 6 8 1.6621 0.0166 -2.4130 7 6 3.5648 -0.8310 -1.1878 8 6 4.1572 -1.0203 0.2101 9 7 5.6203 -1.1084 0.1141 10 6 6.2249 -1.2903 1.4406 11 6 7.7459 -1.3782 1.3001 12 1 8.1135 -0.4986 0.7718 13 6 8.0994 -2.5893 0.5418 14 7 8.3720 -3.5247 -0.0445 15 6 8.3836 -1.4422 2.6894 16 6 9.8842 -1.4051 2.5556 17 1 10.3377 -1.3417 1.5775 18 6 10.6781 -1.4510 3.6820 19 7 10.1257 -1.5276 4.8731 20 14 12.5381 -1.4056 3.5162 21 1 12.9444 -0.1464 2.8419 22 1 13.1570 -1.4676 4.8646 23 1 12.9916 -2.5673 2.7099 24 6 4.3734 -0.0079 -2.1927 25 6 4.2706 -1.5259 -2.3540 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 2.0142 0.9169 -2.4396 34 1 3.8851 -0.1717 0.8379 35 1 3.7656 -1.9376 0.6495 36 1 5.8976 -1.8475 -0.5143 37 1 5.9668 -0.4435 2.0767 38 1 5.8480 -2.2096 1.8887 39 1 8.0504 -0.5900 3.2817 40 1 8.0856 -2.3669 3.1837 41 1 10.6843 -1.5595 5.6655 42 1 3.8190 0.6114 -2.8977 43 1 5.3275 0.3991 -1.8578 44 1 5.1570 -2.1175 -2.1254 45 1 3.6485 -1.9052 -3.1648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582301432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:18 Heat of formation + Delta-G solvation = -39.273490 kcal Electronic energy + Delta-G solvation = -22130.977697 eV Core-core repulsion = 18954.752034 eV Total energy + Delta-G solvation = -3176.225663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88772 -38.81043 -37.20019 -35.90263 -35.14048 -34.67410 -32.93949 -29.19122 -28.06701 -28.04167 -25.87702 -23.88581 -23.58756 -23.15016 -21.42708 -19.86470 -18.60617 -18.27921 -17.66661 -17.19126 -16.84066 -16.61399 -15.96019 -15.64824 -15.24718 -14.82947 -14.66449 -14.44126 -14.18724 -13.93713 -13.86065 -13.55414 -13.29744 -13.16309 -13.06638 -12.83950 -12.80505 -12.69604 -12.47329 -12.37268 -12.18757 -12.08698 -12.01066 -11.71652 -11.55438 -11.49175 -11.35918 -11.09632 -10.73958 -10.55207 -10.39524 -9.37524 -8.19963 -6.28117 1.40877 1.42236 1.49368 1.91711 1.93874 2.41071 2.84490 3.10289 3.15098 3.23955 3.47530 3.77223 3.90355 3.98517 4.08406 4.12417 4.19562 4.29213 4.37996 4.44311 4.66621 4.68350 4.77629 4.85327 4.86975 4.90023 4.95109 4.96770 5.00279 5.08372 5.11155 5.18203 5.22054 5.29173 5.45066 5.46753 5.49413 5.54431 5.62121 5.78784 6.01144 6.20878 6.30007 6.73591 6.81025 6.86582 7.40397 8.90714 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028410 B = 0.003216 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.342410 B = 8704.818180 C = 9210.832342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.153 4.153 4 C 0.156 3.844 5 H 0.092 0.908 6 O -0.566 6.566 7 C -0.153 4.153 8 C 0.093 3.907 9 N -0.688 5.688 10 C 0.078 3.922 11 C 0.019 3.981 12 H 0.124 0.876 13 C 0.250 3.750 14 N -0.506 5.506 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.147 4.147 25 C -0.181 4.181 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.382 0.618 34 H 0.096 0.904 35 H 0.032 0.968 36 H 0.332 0.668 37 H 0.108 0.892 38 H 0.031 0.969 39 H 0.038 0.962 40 H -0.001 1.001 41 H 0.264 0.736 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.452 7.308 -10.074 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.210 4.210 4 C 0.096 3.904 5 H 0.110 0.890 6 O -0.375 6.375 7 C -0.153 4.153 8 C -0.036 4.036 9 N -0.320 5.320 10 C -0.052 4.052 11 C -0.002 4.002 12 H 0.141 0.859 13 C -0.066 4.066 14 N -0.184 5.184 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.773 3.227 21 H -0.187 1.187 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.184 4.184 25 C -0.218 4.218 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.223 6.031 -10.915 22.914 hybrid contribution 1.340 -0.551 0.810 1.660 sum -17.883 5.480 -10.106 21.259 Atomic orbital electron populations 1.21756 0.94489 1.01697 1.01993 1.21766 0.96595 0.97656 0.98263 1.21887 1.01656 0.95053 1.02409 1.21243 0.89107 0.95093 0.84937 0.89025 1.86547 1.76803 1.30800 1.43340 1.22273 0.94763 1.07180 0.91117 1.21517 0.86121 1.01055 0.94875 1.60634 1.08972 1.51896 1.10513 1.21919 0.90326 1.01841 0.91079 1.19241 0.96278 0.89043 0.95680 0.85871 1.29762 0.91059 0.94312 0.91438 1.81086 1.10901 1.13112 1.13254 1.18977 0.93988 0.97297 0.89720 1.21535 0.93081 1.50629 0.92642 0.92836 1.25706 1.02912 0.94901 0.95197 1.70026 1.36958 1.51105 0.98178 0.85764 0.80753 0.78905 0.77253 1.18713 1.20705 1.20771 1.22966 1.01749 0.93150 1.00495 1.22907 1.02075 0.96567 1.00227 0.93054 0.92517 0.92184 0.90175 0.92105 0.91882 0.91952 0.76724 0.88582 0.95011 0.84889 0.87368 0.95069 0.94391 0.98219 0.92694 0.87784 0.88160 0.90355 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.09 71.98 0.65 -1.18 16 2 C -0.12 -1.65 2.25 -10.79 -0.02 -1.67 16 3 C -0.15 -1.83 8.28 71.98 0.60 -1.24 16 4 C 0.16 2.42 2.99 30.59 0.09 2.51 16 5 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 6 O -0.57 -9.07 11.93 -148.98 -1.78 -10.84 16 7 C -0.15 -2.64 1.63 -52.18 -0.08 -2.72 16 8 C 0.09 1.78 4.52 86.30 0.39 2.17 16 9 N -0.69 -16.16 5.41 -513.89 -2.78 -18.94 16 10 C 0.08 2.12 5.12 86.30 0.44 2.56 16 11 C 0.02 0.68 2.42 -12.60 -0.03 0.65 16 12 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 13 C 0.25 9.90 12.98 89.43 1.16 11.06 16 14 N -0.51 -21.83 18.54 20.02 0.37 -21.46 16 15 C 0.04 1.77 4.42 29.85 0.13 1.91 16 16 C -0.54 -28.48 8.60 25.60 0.22 -28.26 16 17 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 18 C 0.01 0.65 5.46 84.66 0.46 1.11 16 19 N -0.92 -52.72 13.29 21.45 0.28 -52.43 16 20 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 C -0.15 -2.57 9.13 30.59 0.28 -2.29 16 25 C -0.18 -3.61 9.54 30.59 0.29 -3.32 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.77 7.82 -2.39 -0.02 0.75 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 1.10 6.63 -2.39 -0.02 1.09 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.84 6.21 -2.39 -0.01 0.83 16 32 H 0.06 0.64 6.72 -2.39 -0.02 0.62 16 33 H 0.38 4.36 5.71 -74.06 -0.42 3.94 16 34 H 0.10 1.66 5.64 -2.38 -0.01 1.65 16 35 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.33 8.61 5.70 -89.70 -0.51 8.10 16 37 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 42 H 0.10 1.51 6.38 -2.39 -0.02 1.49 16 43 H 0.10 2.01 7.58 -2.39 -0.02 1.99 16 44 H 0.08 1.79 6.35 -2.39 -0.02 1.77 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -60.95 356.65 2.76 -58.19 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.05 Total: 18.90 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.58 Total: -18.70 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -2.12 Total: -92.83 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.78 Total: -10.84 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -60.95 2.76 -58.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582301432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -60.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds