Wall clock time and date at job start Tue Mar 31 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47187 * 2 1 4 4 C 1.52996 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.54835 * 29.33056 * 4 3 2 6 6 C 1.53069 * 117.51269 * 243.60769 * 4 3 2 7 7 C 1.52997 * 59.98709 * 252.52289 * 6 4 3 8 8 H 1.08998 * 117.49894 * 107.49679 * 7 6 4 9 9 C 1.50700 * 117.50172 * 252.50113 * 7 6 4 10 10 O 1.21281 * 119.99947 * 68.74087 * 9 7 6 11 11 N 1.34776 * 119.99996 * 248.74346 * 9 7 6 12 12 C 1.46506 * 119.99645 * 179.97438 * 11 9 7 13 13 C 1.53046 * 109.45580 * 275.02536 * 12 11 9 14 14 C 1.53195 * 109.30529 * 178.60347 * 13 12 11 15 15 N 1.46925 * 108.76605 * 54.65749 * 14 13 12 16 16 C 1.36947 * 120.63021 * 126.40092 * 15 14 13 17 17 H 1.07994 * 119.99498 * 207.66126 * 16 15 14 18 18 C 1.38815 * 119.99634 * 27.66382 * 16 15 14 19 19 N 1.31613 * 120.00056 * 17.36751 * 18 16 15 20 20 Si 1.86796 * 119.99717 * 197.36646 * 18 16 15 21 21 H 1.48496 * 109.47282 * 89.99914 * 20 18 16 22 22 H 1.48502 * 109.47216 * 210.00576 * 20 18 16 23 23 H 1.48506 * 109.47133 * 330.00197 * 20 18 16 24 24 C 1.46922 * 118.73926 * 306.38353 * 15 14 13 25 25 C 1.53043 * 109.45570 * 154.97543 * 12 11 9 26 26 H 1.09005 * 109.47255 * 300.00129 * 1 2 3 27 27 H 1.09000 * 109.47564 * 60.00246 * 1 2 3 28 28 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46864 * 239.99658 * 2 1 3 30 30 H 1.09002 * 109.47044 * 119.99730 * 2 1 3 31 31 H 1.09005 * 109.47128 * 59.99793 * 3 2 1 32 32 H 1.09000 * 109.46668 * 300.00303 * 3 2 1 33 33 H 1.08998 * 117.51659 * 145.04425 * 6 4 3 34 34 H 1.08998 * 117.49514 * 0.02562 * 6 4 3 35 35 H 0.96995 * 119.99673 * 0.27674 * 11 9 7 36 36 H 1.08997 * 109.46238 * 34.99634 * 12 11 9 37 37 H 1.09001 * 109.49719 * 298.56381 * 13 12 11 38 38 H 1.08992 * 109.49925 * 58.66946 * 13 12 11 39 39 H 1.08998 * 109.60185 * 294.86509 * 14 13 12 40 40 H 1.09004 * 109.57912 * 174.43717 * 14 13 12 41 41 H 0.97002 * 119.99731 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58066 * 293.81727 * 24 15 14 43 43 H 1.08999 * 109.70418 * 173.46583 * 24 15 14 44 44 H 1.08996 * 109.49474 * 301.33623 * 25 12 11 45 45 H 1.09004 * 109.49757 * 61.40061 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0398 0.5853 -0.4827 6 6 4.2776 2.0458 1.2152 7 6 4.2764 2.7945 -0.1190 8 1 3.6510 3.6840 -0.1964 9 6 5.5685 2.8391 -0.8932 10 8 6.0098 1.8271 -1.3952 11 7 6.2338 4.0035 -1.0276 12 6 7.4903 4.0465 -1.7797 13 6 8.6494 3.6589 -0.8586 14 6 9.9568 3.6712 -1.6570 15 7 10.1079 4.9854 -2.2963 16 6 11.2490 5.7212 -2.1175 17 1 11.2123 6.7986 -2.1817 18 6 12.4527 5.0821 -1.8539 19 7 12.5850 3.7974 -2.1073 20 14 13.8848 6.0454 -1.1395 21 1 13.8212 6.0000 0.3434 22 1 15.1632 5.4456 -1.5989 23 1 13.8083 7.4568 -1.5951 24 6 9.0117 5.4951 -3.1312 25 6 7.7148 5.4621 -2.3165 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.2130 1.5855 1.5332 34 1 3.6528 2.4422 2.0156 35 1 5.8829 4.8120 -0.6226 36 1 7.4389 3.3459 -2.6131 37 1 8.7170 4.3737 -0.0384 38 1 8.4774 2.6599 -0.4580 39 1 9.9259 2.8945 -2.4211 40 1 10.7966 3.4927 -0.9854 41 1 13.4262 3.3509 -1.9235 42 1 8.9037 4.8671 -4.0156 43 1 9.2266 6.5197 -3.4346 44 1 6.8775 5.7465 -2.9536 45 1 7.7908 6.1597 -1.4824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589699350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:38 Heat of formation + Delta-G solvation = -16.797359 kcal Electronic energy + Delta-G solvation = -21949.509603 eV Core-core repulsion = 18774.258579 eV Total energy + Delta-G solvation = -3175.251025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.99920 -37.96099 -36.78513 -34.37296 -34.05618 -32.09458 -30.07459 -29.51318 -27.74099 -25.40215 -23.81134 -22.27699 -22.18587 -21.59000 -20.67142 -19.94519 -19.14801 -17.26816 -16.66033 -15.85562 -15.46694 -14.99483 -14.81245 -14.37524 -14.21848 -13.78803 -13.51434 -13.48571 -13.07423 -12.89271 -12.66796 -12.38430 -12.34711 -12.22495 -11.56033 -11.49358 -11.27674 -11.12762 -11.07549 -10.91858 -10.73752 -10.38755 -10.37586 -10.21679 -10.16300 -10.05132 -9.77434 -9.74572 -9.39796 -8.67642 -8.40735 -6.68530 -5.77613 -3.20457 2.65678 3.30958 3.38954 3.45160 3.46587 3.75748 4.41095 4.50089 4.60735 4.67278 4.83729 4.90341 5.03321 5.08914 5.27608 5.32253 5.41364 5.45721 5.47020 5.53177 5.55432 5.60991 5.64968 5.77930 5.81784 5.85347 5.96788 6.00210 6.09625 6.19614 6.25404 6.38506 6.45802 6.62680 6.66068 6.78624 6.93330 6.96967 7.38864 7.68466 7.78496 7.80411 8.45379 8.48094 9.21676 9.85103 10.41750 11.30915 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.002876 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.264569 B = 9733.651967 C = 9923.947993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.120 4.120 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.189 4.189 8 H 0.120 0.880 9 C 0.538 3.462 10 O -0.542 6.542 11 N -0.721 5.721 12 C 0.150 3.850 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C -0.138 4.138 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.698 -2.144 5.860 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.187 4.187 7 C -0.211 4.211 8 H 0.138 0.862 9 C 0.324 3.676 10 O -0.419 6.419 11 N -0.370 5.370 12 C 0.047 3.953 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.316 5.316 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.021 3.979 25 C -0.178 4.178 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.196 -2.959 5.480 22.092 hybrid contribution 0.639 0.950 0.601 1.293 sum -20.557 -2.009 6.082 21.531 Atomic orbital electron populations 1.21781 0.95944 1.01602 1.01707 1.21507 0.95555 0.96559 1.02429 1.21237 0.92045 0.97316 1.02058 1.22450 0.94484 0.95687 1.01198 0.86417 1.23095 1.03111 1.02223 0.90263 1.22335 0.98086 0.98567 1.02085 0.86244 1.19619 0.84450 0.83568 0.79986 1.90699 1.68823 1.33898 1.48482 1.46258 1.25020 1.10428 1.55332 1.21048 0.81896 0.98007 0.94351 1.22556 0.97175 0.99913 0.98954 1.20768 0.93291 0.86324 0.94925 1.44115 1.15015 1.19070 1.53369 1.19191 0.85326 0.89897 1.43943 0.91591 1.25062 0.97206 0.96192 1.01263 1.70040 1.25258 1.09459 1.49780 0.86281 0.81950 0.79331 0.79132 1.21469 1.21768 1.20438 1.20834 0.86969 0.98086 0.91998 1.22331 0.99722 0.95195 1.00579 0.92847 0.92765 0.92772 0.91731 0.91797 0.91734 0.91474 0.88257 0.88007 0.77183 0.90109 0.92706 0.92963 0.96159 0.89219 0.93574 0.96217 0.92335 0.92665 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.91 5.89 -26.73 -0.16 -1.07 16 3 C -0.09 -0.70 5.50 -26.73 -0.15 -0.85 16 4 C -0.12 -1.23 5.25 -90.58 -0.48 -1.70 16 5 H 0.12 1.45 7.60 -51.93 -0.39 1.06 16 6 C -0.15 -1.45 9.88 -26.70 -0.26 -1.71 16 7 C -0.19 -2.07 5.91 -91.77 -0.54 -2.61 16 8 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 9 C 0.54 8.19 7.58 -10.99 -0.08 8.10 16 10 O -0.54 -10.57 15.92 5.56 0.09 -10.48 16 11 N -0.72 -10.42 5.07 -53.76 -0.27 -10.69 16 12 C 0.15 2.68 2.42 -67.88 -0.16 2.52 16 13 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 14 C 0.17 4.29 5.31 -3.71 -0.02 4.27 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.98 9.59 -15.05 -0.14 -7.13 16 17 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 19 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.15 3.09 6.51 -3.72 -0.02 3.07 16 25 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.39 4.50 8.61 -40.82 -0.35 4.15 16 36 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -31.64 359.79 -9.88 -41.52 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.16 Total: 2.26 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.04 Total: -3.35 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.17 Total: -52.13 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.64 -9.88 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.724 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds