Wall clock time and date at job start Tue Mar 31 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47187 * 2 1 4 4 C 1.52996 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.54835 * 29.33056 * 4 3 2 6 6 C 1.53069 * 117.51269 * 243.60769 * 4 3 2 7 7 C 1.52997 * 59.98709 * 252.52289 * 6 4 3 8 8 H 1.08998 * 117.49894 * 107.49679 * 7 6 4 9 9 C 1.50700 * 117.50172 * 252.50113 * 7 6 4 10 10 O 1.21281 * 119.99947 * 68.74087 * 9 7 6 11 11 N 1.34776 * 119.99996 * 248.74346 * 9 7 6 12 12 C 1.46506 * 119.99645 * 179.97438 * 11 9 7 13 13 C 1.53046 * 109.45580 * 275.02536 * 12 11 9 14 14 C 1.53195 * 109.30529 * 178.60347 * 13 12 11 15 15 N 1.46925 * 108.76605 * 54.65749 * 14 13 12 16 16 C 1.36947 * 120.63021 * 126.40092 * 15 14 13 17 17 H 1.07994 * 119.99498 * 207.66126 * 16 15 14 18 18 C 1.38815 * 119.99634 * 27.66382 * 16 15 14 19 19 N 1.31613 * 120.00056 * 17.36751 * 18 16 15 20 20 Si 1.86796 * 119.99717 * 197.36646 * 18 16 15 21 21 H 1.48496 * 109.47282 * 89.99914 * 20 18 16 22 22 H 1.48502 * 109.47216 * 210.00576 * 20 18 16 23 23 H 1.48506 * 109.47133 * 330.00197 * 20 18 16 24 24 C 1.46922 * 118.73926 * 306.38353 * 15 14 13 25 25 C 1.53043 * 109.45570 * 154.97543 * 12 11 9 26 26 H 1.09005 * 109.47255 * 300.00129 * 1 2 3 27 27 H 1.09000 * 109.47564 * 60.00246 * 1 2 3 28 28 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46864 * 239.99658 * 2 1 3 30 30 H 1.09002 * 109.47044 * 119.99730 * 2 1 3 31 31 H 1.09005 * 109.47128 * 59.99793 * 3 2 1 32 32 H 1.09000 * 109.46668 * 300.00303 * 3 2 1 33 33 H 1.08998 * 117.51659 * 145.04425 * 6 4 3 34 34 H 1.08998 * 117.49514 * 0.02562 * 6 4 3 35 35 H 0.96995 * 119.99673 * 0.27674 * 11 9 7 36 36 H 1.08997 * 109.46238 * 34.99634 * 12 11 9 37 37 H 1.09001 * 109.49719 * 298.56381 * 13 12 11 38 38 H 1.08992 * 109.49925 * 58.66946 * 13 12 11 39 39 H 1.08998 * 109.60185 * 294.86509 * 14 13 12 40 40 H 1.09004 * 109.57912 * 174.43717 * 14 13 12 41 41 H 0.97002 * 119.99731 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.58066 * 293.81727 * 24 15 14 43 43 H 1.08999 * 109.70418 * 173.46583 * 24 15 14 44 44 H 1.08996 * 109.49474 * 301.33623 * 25 12 11 45 45 H 1.09004 * 109.49757 * 61.40061 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0398 0.5853 -0.4827 6 6 4.2776 2.0458 1.2152 7 6 4.2764 2.7945 -0.1190 8 1 3.6510 3.6840 -0.1964 9 6 5.5685 2.8391 -0.8932 10 8 6.0098 1.8271 -1.3952 11 7 6.2338 4.0035 -1.0276 12 6 7.4903 4.0465 -1.7797 13 6 8.6494 3.6589 -0.8586 14 6 9.9568 3.6712 -1.6570 15 7 10.1079 4.9854 -2.2963 16 6 11.2490 5.7212 -2.1175 17 1 11.2123 6.7986 -2.1817 18 6 12.4527 5.0821 -1.8539 19 7 12.5850 3.7974 -2.1073 20 14 13.8848 6.0454 -1.1395 21 1 13.8212 6.0000 0.3434 22 1 15.1632 5.4456 -1.5989 23 1 13.8083 7.4568 -1.5951 24 6 9.0117 5.4951 -3.1312 25 6 7.7148 5.4621 -2.3165 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.2130 1.5855 1.5332 34 1 3.6528 2.4422 2.0156 35 1 5.8829 4.8120 -0.6226 36 1 7.4389 3.3459 -2.6131 37 1 8.7170 4.3737 -0.0384 38 1 8.4774 2.6599 -0.4580 39 1 9.9259 2.8945 -2.4211 40 1 10.7966 3.4927 -0.9854 41 1 13.4262 3.3509 -1.9235 42 1 8.9037 4.8671 -4.0156 43 1 9.2266 6.5197 -3.4346 44 1 6.8775 5.7465 -2.9536 45 1 7.7908 6.1597 -1.4824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589699350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:37 Heat of formation + Delta-G solvation = -35.695866 kcal Electronic energy + Delta-G solvation = -21950.329104 eV Core-core repulsion = 18774.258579 eV Total energy + Delta-G solvation = -3176.070525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20839 -39.33533 -37.98794 -35.99723 -34.72221 -33.89977 -31.82328 -31.27137 -28.42989 -27.11789 -25.16358 -23.94565 -23.29143 -22.71776 -21.47249 -21.29837 -20.62343 -18.87199 -18.12793 -17.27965 -16.73419 -16.14097 -16.02563 -15.75400 -15.38624 -15.26329 -15.24417 -14.79471 -14.29858 -14.16354 -14.09600 -13.71530 -13.22439 -13.11970 -13.05114 -12.90608 -12.65373 -12.62171 -12.19942 -12.15260 -12.04488 -11.92846 -11.88447 -11.66445 -11.56385 -11.41927 -11.15971 -10.97670 -10.70567 -10.60187 -10.00932 -8.74657 -7.89053 -5.35488 1.46854 1.48353 1.51688 1.57527 2.15022 2.50453 2.88311 3.26469 3.58856 3.66638 3.76678 3.85360 3.89130 4.05724 4.19586 4.23544 4.30551 4.31395 4.40692 4.44398 4.63531 4.66182 4.77341 4.82181 4.87787 4.90041 4.95994 4.99563 5.03453 5.05745 5.08845 5.11273 5.22997 5.28721 5.38248 5.42349 5.43337 5.52755 5.56301 5.62024 5.66682 6.36453 6.62627 7.11036 7.31355 7.81965 8.34907 9.18150 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.002876 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.264569 B = 9733.651967 C = 9923.947993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.123 4.123 5 H 0.087 0.913 6 C -0.138 4.138 7 C -0.189 4.189 8 H 0.155 0.845 9 C 0.531 3.469 10 O -0.593 6.593 11 N -0.706 5.706 12 C 0.160 3.840 13 C -0.129 4.129 14 C 0.182 3.818 15 N -0.610 5.610 16 C -0.261 4.261 17 H 0.075 0.925 18 C -0.057 4.057 19 N -0.940 5.940 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.264 1.264 24 C 0.140 3.860 25 C -0.120 4.120 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.416 0.584 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.041 0.959 39 H -0.013 1.013 40 H 0.056 0.944 41 H 0.249 0.751 42 H 0.010 0.990 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.289 0.241 7.231 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.118 4.118 4 C -0.142 4.142 5 H 0.105 0.895 6 C -0.175 4.175 7 C -0.209 4.209 8 H 0.173 0.827 9 C 0.320 3.680 10 O -0.474 6.474 11 N -0.357 5.357 12 C 0.055 3.945 13 C -0.169 4.169 14 C 0.056 3.944 15 N -0.333 5.333 16 C -0.391 4.391 17 H 0.093 0.907 18 C -0.252 4.252 19 N -0.586 5.586 20 Si 0.799 3.201 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.188 1.188 24 C 0.014 3.986 25 C -0.160 4.160 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.253 0.747 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.005 0.995 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.841 -0.519 6.862 24.814 hybrid contribution 1.438 0.152 0.116 1.450 sum -22.403 -0.367 6.978 23.467 Atomic orbital electron populations 1.21761 0.94821 1.01970 1.02236 1.21513 0.96510 0.96447 1.01796 1.21217 0.89874 0.97594 1.03150 1.22451 0.96037 0.94325 1.01424 0.89497 1.23196 1.02673 1.01128 0.90496 1.22359 0.96092 1.00292 1.02205 0.82702 1.20441 0.85553 0.82683 0.79359 1.90688 1.70390 1.35715 1.50598 1.45981 1.23524 1.11404 1.54775 1.20659 0.82462 0.98161 0.93174 1.22292 0.96108 0.99664 0.98859 1.20469 0.94392 0.85794 0.93780 1.44365 1.15756 1.18788 1.54423 1.19592 0.86074 0.90539 1.42879 0.90708 1.25903 1.00018 0.97102 1.02145 1.70217 1.25630 1.11251 1.51480 0.85205 0.78229 0.78538 0.78115 1.21214 1.22469 1.18794 1.21050 0.87516 0.98120 0.91865 1.22128 0.98520 0.94389 1.00948 0.91899 0.92602 0.92578 0.93075 0.91884 0.89686 0.91171 0.90140 0.84645 0.74734 0.92867 0.91923 0.93984 0.99479 0.92577 0.94171 0.97194 0.91221 0.89020 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.13 -1.69 5.89 30.59 0.18 -1.51 16 3 C -0.08 -1.07 5.50 30.59 0.17 -0.90 16 4 C -0.12 -2.36 5.25 -10.77 -0.06 -2.41 16 5 H 0.09 2.22 7.60 -2.39 -0.02 2.20 16 6 C -0.14 -2.33 9.88 30.62 0.30 -2.03 16 7 C -0.19 -3.63 5.91 -11.54 -0.07 -3.70 16 8 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 9 C 0.53 15.63 7.58 87.66 0.66 16.30 16 10 O -0.59 -23.76 15.92 -3.03 -0.05 -23.81 16 11 N -0.71 -18.91 5.07 -442.38 -2.25 -21.15 16 12 C 0.16 5.59 2.42 45.02 0.11 5.70 16 13 C -0.13 -5.34 5.65 30.68 0.17 -5.17 16 14 C 0.18 9.43 5.31 86.36 0.46 9.89 16 15 N -0.61 -31.17 2.99 -699.10 -2.09 -33.26 16 16 C -0.26 -14.37 9.59 84.03 0.81 -13.57 16 17 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16 18 C -0.06 -3.22 4.91 84.86 0.42 -2.80 16 19 N -0.94 -57.51 11.19 21.65 0.24 -57.27 16 20 Si 0.97 45.25 29.59 68.60 2.03 47.28 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.14 5.72 6.51 86.36 0.56 6.28 16 25 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 26 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.80 7.88 -2.38 -0.02 0.79 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.14 1.41 8.03 -2.39 -0.02 1.40 16 35 H 0.42 7.86 8.61 -92.71 -0.80 7.06 16 36 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 40 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -72.26 359.79 2.63 -69.62 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.15 Total: 16.95 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 4.60 Total: 1.64 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.10 Total: -111.68 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.26 2.63 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.927 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds