Wall clock time and date at job start Tue Mar 31 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47172 * 2 1 4 4 C 1.50703 * 109.47083 * 240.00592 * 2 1 3 5 5 H 1.08003 * 119.99886 * 243.42860 * 4 2 1 6 6 C 1.37873 * 120.00483 * 63.42528 * 4 2 1 7 7 N 1.31515 * 119.99911 * 353.91918 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 173.92471 * 6 4 2 9 9 H 1.48495 * 109.47743 * 94.99444 * 8 6 4 10 10 H 1.48499 * 109.46918 * 214.99604 * 8 6 4 11 11 H 1.48503 * 109.46988 * 334.99277 * 8 6 4 12 12 C 1.52988 * 109.47488 * 120.00238 * 2 1 3 13 13 N 1.46502 * 109.47229 * 300.00189 * 12 2 1 14 14 C 1.34778 * 120.00582 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99336 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00268 * 179.97438 * 14 13 12 17 17 C 1.47427 * 125.64853 * 355.38097 * 16 14 13 18 18 C 1.54903 * 104.92846 * 155.83631 * 17 16 14 19 19 C 1.55443 * 101.45437 * 37.00361 * 18 17 16 20 20 C 1.47023 * 125.64793 * 175.40569 * 16 14 13 21 21 H 1.09001 * 109.88032 * 300.45178 * 20 16 14 22 22 C 1.52991 * 109.88521 * 61.46723 * 20 16 14 23 23 C 1.53000 * 117.49818 * 252.28158 * 22 20 16 24 24 C 1.52996 * 117.50173 * 183.65765 * 22 20 16 25 25 H 1.09000 * 109.47035 * 304.85138 * 1 2 3 26 26 H 1.09010 * 109.47035 * 64.84475 * 1 2 3 27 27 H 1.08994 * 109.47204 * 184.84258 * 1 2 3 28 28 H 1.08999 * 109.46545 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46784 * 300.00334 * 3 2 1 30 30 H 1.08995 * 109.46647 * 60.00299 * 3 2 1 31 31 H 0.96997 * 120.00353 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47515 * 180.02562 * 12 2 1 33 33 H 1.09005 * 109.47475 * 59.99697 * 12 2 1 34 34 H 0.97005 * 120.00102 * 359.97438 * 13 12 2 35 35 H 1.09001 * 110.36535 * 274.73101 * 17 16 14 36 36 H 1.09002 * 110.36621 * 36.93798 * 17 16 14 37 37 H 1.09004 * 111.00565 * 155.13619 * 18 17 16 38 38 H 1.09000 * 111.00812 * 278.98670 * 18 17 16 39 39 H 1.09002 * 110.71399 * 206.14312 * 19 18 17 40 40 H 1.09003 * 110.85876 * 82.95712 * 19 18 17 41 41 H 1.08997 * 115.55183 * 37.98399 * 22 20 16 42 42 H 1.08998 * 117.50073 * 359.97438 * 23 22 20 43 43 H 1.09000 * 117.50170 * 145.02058 * 23 22 20 44 44 H 1.09002 * 117.50175 * 214.97807 * 24 22 20 45 45 H 1.09004 * 117.49798 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6068 -1.6196 -1.1325 6 6 1.7585 -0.1994 -2.4816 7 7 0.9604 0.8382 -2.6079 8 14 2.5210 -0.9812 -3.9971 9 1 1.5708 -1.9627 -4.5792 10 1 2.8206 0.0724 -4.9999 11 1 3.7781 -1.6746 -3.6171 12 6 2.0400 -0.7212 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5752 -1.4805 3.7809 16 7 1.4281 0.1441 4.7699 17 6 0.6584 1.4015 4.7821 18 6 -0.1204 1.3797 6.1209 19 6 0.9183 0.7212 7.0715 20 6 1.6253 -0.3014 6.1571 21 1 1.1851 -1.2889 6.2954 22 6 3.1198 -0.3481 6.4811 23 6 3.7715 -1.7261 6.6122 24 6 3.5279 -0.8733 7.8589 25 1 -0.3633 0.5873 0.8433 26 1 -0.3634 0.4369 -0.9303 27 1 -0.3633 -1.0239 0.0867 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7675 1.1974 -3.4880 32 1 3.1300 -0.7208 1.2493 33 1 1.6767 -1.7489 1.2491 34 1 0.9943 0.7582 2.3564 35 1 1.3312 2.2584 4.7484 36 1 -0.0340 1.4306 3.9408 37 1 -0.3654 2.3906 6.4469 38 1 -1.0191 0.7683 6.0403 39 1 0.4186 0.2176 7.8991 40 1 1.6274 1.4606 7.4436 41 1 3.7195 0.4536 6.0502 42 1 3.1354 -2.5994 6.4680 43 1 4.8002 -1.8312 6.2675 44 1 4.3964 -0.4174 8.3344 45 1 2.7316 -1.1860 8.5344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:20 Heat of formation + Delta-G solvation = -8.738320 kcal Electronic energy + Delta-G solvation = -22953.223943 eV Core-core repulsion = 19778.322384 eV Total energy + Delta-G solvation = -3174.901559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17267 -38.05146 -36.27623 -36.02776 -33.17899 -31.54870 -30.45226 -28.88332 -25.69626 -25.59464 -24.96127 -23.43357 -22.43000 -21.58617 -20.69377 -19.27559 -18.76961 -17.86363 -16.39893 -15.82288 -15.54402 -14.84689 -14.69905 -14.55478 -14.08051 -13.86317 -13.23675 -13.14989 -12.94095 -12.70677 -12.48529 -12.16369 -12.08541 -11.60979 -11.37186 -11.33898 -11.30376 -11.14201 -10.86744 -10.81734 -10.66686 -10.36662 -10.31446 -10.16856 -9.93180 -9.59879 -9.55651 -9.25711 -8.79296 -8.57072 -8.34406 -8.05039 -6.00202 -4.09212 2.95822 3.29609 3.37114 3.42321 3.70516 3.86820 4.37506 4.42972 4.49386 4.64063 4.69844 4.94194 5.05130 5.09447 5.22575 5.26399 5.36007 5.47555 5.57460 5.61651 5.63635 5.73383 5.89720 6.03669 6.04628 6.18904 6.23010 6.30570 6.41166 6.51341 6.55756 6.84504 6.86126 6.97933 7.06461 7.17293 7.39156 7.50827 7.58061 7.72427 8.04127 8.15662 8.42054 8.53176 8.90579 9.15068 9.56048 11.01196 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.003947 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.678270 B = 7091.737754 C = 7757.141554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.152 3.848 13 N -0.733 5.733 14 C 0.715 3.285 15 O -0.587 6.587 16 N -0.637 5.637 17 C 0.099 3.901 18 C -0.132 4.132 19 C -0.124 4.124 20 C 0.189 3.811 21 H 0.069 0.931 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.185 4.185 25 H 0.004 0.996 26 H 0.086 0.914 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.005 0.995 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.392 0.608 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 3.218 18.670 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.029 3.971 13 N -0.388 5.388 14 C 0.416 3.584 15 O -0.465 6.465 16 N -0.377 5.377 17 C -0.025 4.025 18 C -0.170 4.170 19 C -0.162 4.162 20 C 0.085 3.915 21 H 0.087 0.913 22 C -0.171 4.171 23 C -0.190 4.190 24 C -0.222 4.222 25 H 0.023 0.977 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.227 0.773 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.270 2.538 18.463 18.679 hybrid contribution 0.168 0.062 -0.981 0.997 sum -1.103 2.601 17.482 17.709 Atomic orbital electron populations 1.21830 0.97833 0.98298 1.00700 1.18367 0.92771 0.92786 0.90612 1.21793 0.98554 0.98375 0.99937 1.20991 1.33795 1.09565 0.89922 0.92413 1.24872 0.94780 0.95065 0.98776 1.69815 1.35264 1.24166 1.23172 0.86579 0.79793 0.78929 0.82717 1.20833 1.21225 1.19826 1.21568 0.97822 0.95343 0.82401 1.45539 1.55607 1.33182 1.04437 1.15598 0.80270 0.82662 0.79829 1.90884 1.42453 1.27693 1.85482 1.47649 1.59343 1.25913 1.04806 1.22227 0.94443 0.87292 0.98496 1.22804 0.98031 1.01632 0.94515 1.22696 0.97820 0.98320 0.97355 1.20845 0.92716 0.97656 0.80329 0.91275 1.22495 0.96241 0.98922 0.99490 1.22794 1.01779 0.94588 0.99834 1.22958 1.03069 1.05307 0.90898 0.97691 0.89500 0.95667 0.95459 0.89729 0.97576 0.93063 0.93043 0.93082 0.77293 0.91732 0.90916 0.89912 0.90588 0.90272 0.90301 0.88200 0.88827 0.89258 0.89153 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.09 37.16 0.30 -2.66 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.96 8.04 37.16 0.30 -2.66 16 4 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 5 H 0.06 1.55 7.75 -52.48 -0.41 1.15 16 6 C 0.07 1.75 5.12 -17.82 -0.09 1.66 16 7 N -0.89 -23.74 9.36 55.43 0.52 -23.22 16 8 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.36 4.50 -4.05 -0.02 3.34 16 13 N -0.73 -13.95 4.95 -65.23 -0.32 -14.27 16 14 C 0.71 13.52 8.31 -86.92 -0.72 12.80 16 15 O -0.59 -13.00 15.56 5.29 0.08 -12.92 16 16 N -0.64 -9.30 3.07 -168.69 -0.52 -9.82 16 17 C 0.10 1.10 6.66 -2.53 -0.02 1.08 16 18 C -0.13 -1.09 7.11 -24.43 -0.17 -1.26 16 19 C -0.12 -1.06 6.31 -24.74 -0.16 -1.21 16 20 C 0.19 2.33 3.05 -66.95 -0.20 2.13 16 21 H 0.07 0.92 7.96 -51.93 -0.41 0.51 16 22 C -0.15 -1.92 4.48 -90.63 -0.41 -2.32 16 23 C -0.15 -1.99 9.61 -26.73 -0.26 -2.24 16 24 C -0.18 -1.85 10.06 -26.73 -0.27 -2.12 16 25 H 0.00 0.08 7.01 -51.93 -0.36 -0.28 16 26 H 0.09 2.20 6.02 -51.92 -0.31 1.89 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 2.13 6.04 -51.93 -0.31 1.82 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 6.83 4.60 -40.82 -0.19 6.64 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.81 7.13 -51.93 -0.37 0.44 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 41 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -29.23 348.97 -9.83 -39.06 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.76 Total: 5.94 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.07 Total: -5.90 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.32 Total: -47.31 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.23 -9.83 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.325 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds