Wall clock time and date at job start Tue Mar 31 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47172 * 2 1 4 4 C 1.50703 * 109.47083 * 240.00592 * 2 1 3 5 5 H 1.08003 * 119.99886 * 243.42860 * 4 2 1 6 6 C 1.37873 * 120.00483 * 63.42528 * 4 2 1 7 7 N 1.31515 * 119.99911 * 353.91918 * 6 4 2 8 8 Si 1.86798 * 120.00268 * 173.92471 * 6 4 2 9 9 H 1.48495 * 109.47743 * 94.99444 * 8 6 4 10 10 H 1.48499 * 109.46918 * 214.99604 * 8 6 4 11 11 H 1.48503 * 109.46988 * 334.99277 * 8 6 4 12 12 C 1.52988 * 109.47488 * 120.00238 * 2 1 3 13 13 N 1.46502 * 109.47229 * 300.00189 * 12 2 1 14 14 C 1.34778 * 120.00582 * 179.97438 * 13 12 2 15 15 O 1.21589 * 119.99336 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00268 * 179.97438 * 14 13 12 17 17 C 1.47427 * 125.64853 * 355.38097 * 16 14 13 18 18 C 1.54903 * 104.92846 * 155.83631 * 17 16 14 19 19 C 1.55443 * 101.45437 * 37.00361 * 18 17 16 20 20 C 1.47023 * 125.64793 * 175.40569 * 16 14 13 21 21 H 1.09001 * 109.88032 * 300.45178 * 20 16 14 22 22 C 1.52991 * 109.88521 * 61.46723 * 20 16 14 23 23 C 1.53000 * 117.49818 * 252.28158 * 22 20 16 24 24 C 1.52996 * 117.50173 * 183.65765 * 22 20 16 25 25 H 1.09000 * 109.47035 * 304.85138 * 1 2 3 26 26 H 1.09010 * 109.47035 * 64.84475 * 1 2 3 27 27 H 1.08994 * 109.47204 * 184.84258 * 1 2 3 28 28 H 1.08999 * 109.46545 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46784 * 300.00334 * 3 2 1 30 30 H 1.08995 * 109.46647 * 60.00299 * 3 2 1 31 31 H 0.96997 * 120.00353 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47515 * 180.02562 * 12 2 1 33 33 H 1.09005 * 109.47475 * 59.99697 * 12 2 1 34 34 H 0.97005 * 120.00102 * 359.97438 * 13 12 2 35 35 H 1.09001 * 110.36535 * 274.73101 * 17 16 14 36 36 H 1.09002 * 110.36621 * 36.93798 * 17 16 14 37 37 H 1.09004 * 111.00565 * 155.13619 * 18 17 16 38 38 H 1.09000 * 111.00812 * 278.98670 * 18 17 16 39 39 H 1.09002 * 110.71399 * 206.14312 * 19 18 17 40 40 H 1.09003 * 110.85876 * 82.95712 * 19 18 17 41 41 H 1.08997 * 115.55183 * 37.98399 * 22 20 16 42 42 H 1.08998 * 117.50073 * 359.97438 * 23 22 20 43 43 H 1.09000 * 117.50170 * 145.02058 * 23 22 20 44 44 H 1.09002 * 117.50175 * 214.97807 * 24 22 20 45 45 H 1.09004 * 117.49798 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6068 -1.6196 -1.1325 6 6 1.7585 -0.1994 -2.4816 7 7 0.9604 0.8382 -2.6079 8 14 2.5210 -0.9812 -3.9971 9 1 1.5708 -1.9627 -4.5792 10 1 2.8206 0.0724 -4.9999 11 1 3.7781 -1.6746 -3.6171 12 6 2.0400 -0.7212 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5752 -1.4805 3.7809 16 7 1.4281 0.1441 4.7699 17 6 0.6584 1.4015 4.7821 18 6 -0.1204 1.3797 6.1209 19 6 0.9183 0.7212 7.0715 20 6 1.6253 -0.3014 6.1571 21 1 1.1851 -1.2889 6.2954 22 6 3.1198 -0.3481 6.4811 23 6 3.7715 -1.7261 6.6122 24 6 3.5279 -0.8733 7.8589 25 1 -0.3633 0.5873 0.8433 26 1 -0.3634 0.4369 -0.9303 27 1 -0.3633 -1.0239 0.0867 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7675 1.1974 -3.4880 32 1 3.1300 -0.7208 1.2493 33 1 1.6767 -1.7489 1.2491 34 1 0.9943 0.7582 2.3564 35 1 1.3312 2.2584 4.7484 36 1 -0.0340 1.4306 3.9408 37 1 -0.3654 2.3906 6.4469 38 1 -1.0191 0.7683 6.0403 39 1 0.4186 0.2176 7.8991 40 1 1.6274 1.4606 7.4436 41 1 3.7195 0.4536 6.0502 42 1 3.1354 -2.5994 6.4680 43 1 4.8002 -1.8312 6.2675 44 1 4.3964 -0.4174 8.3344 45 1 2.7316 -1.1860 8.5344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:19 Heat of formation + Delta-G solvation = -24.425364 kcal Electronic energy + Delta-G solvation = -22953.904184 eV Core-core repulsion = 19778.322384 eV Total energy + Delta-G solvation = -3175.581800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41173 -39.36084 -37.93466 -37.09754 -34.93817 -33.03050 -31.90511 -29.79555 -27.58285 -27.46286 -26.72599 -24.59947 -23.30934 -22.56203 -21.70745 -20.59324 -20.54822 -19.18159 -17.83522 -17.43383 -16.77293 -16.63642 -16.04443 -15.92812 -15.28924 -15.06325 -14.77159 -14.65541 -14.21973 -14.00948 -13.80451 -13.52351 -13.29002 -13.05850 -13.05230 -12.68071 -12.59945 -12.42153 -12.28096 -12.23519 -12.14118 -12.06798 -11.55564 -11.49855 -11.31549 -11.27135 -11.09424 -10.76115 -10.71157 -10.37144 -10.05695 -9.40461 -8.03150 -6.18070 1.41901 1.45073 1.54127 1.70454 2.23098 2.45816 2.90055 3.19984 3.22856 3.66538 3.73005 3.80227 4.14297 4.15877 4.22412 4.31055 4.41528 4.51384 4.51815 4.63312 4.69247 4.77753 4.81759 4.95945 4.99305 5.03720 5.04212 5.07642 5.10410 5.14366 5.18421 5.24134 5.28301 5.37549 5.41871 5.50181 5.63843 5.65149 5.66869 6.13281 6.15155 6.20916 6.43625 6.85245 7.09938 7.49162 7.67477 8.96075 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029200 B = 0.003947 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.678270 B = 7091.737754 C = 7757.141554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.170 3.830 13 N -0.727 5.727 14 C 0.708 3.292 15 O -0.628 6.628 16 N -0.635 5.635 17 C 0.087 3.913 18 C -0.121 4.121 19 C -0.112 4.112 20 C 0.180 3.820 21 H 0.055 0.945 22 C -0.164 4.164 23 C -0.181 4.181 24 C -0.144 4.144 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.401 0.599 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 4.732 20.769 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.046 3.954 13 N -0.383 5.383 14 C 0.410 3.590 15 O -0.509 6.509 16 N -0.373 5.373 17 C -0.035 4.035 18 C -0.159 4.159 19 C -0.150 4.150 20 C 0.077 3.923 21 H 0.073 0.927 22 C -0.183 4.183 23 C -0.219 4.219 24 C -0.181 4.181 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.265 4.097 20.601 21.126 hybrid contribution 0.474 -0.416 -1.597 1.717 sum -1.791 3.680 19.004 19.440 Atomic orbital electron populations 1.21653 0.97092 0.98078 1.00670 1.18365 0.93288 0.93078 0.90188 1.21624 0.97824 0.97796 1.00249 1.21246 1.34287 1.09654 0.91607 0.93866 1.25435 0.95117 0.95606 1.00833 1.69908 1.35452 1.24592 1.23672 0.85752 0.78862 0.78269 0.79972 1.20512 1.20595 1.20163 1.21096 0.96471 0.94534 0.83304 1.45250 1.55886 1.33329 1.03851 1.15772 0.80152 0.82514 0.80586 1.90854 1.44225 1.29601 1.86196 1.47711 1.58461 1.26593 1.04506 1.22558 0.94660 0.85723 1.00557 1.22816 0.97375 1.03376 0.92291 1.22706 0.97791 0.97495 0.96993 1.21124 0.92963 0.98452 0.79803 0.92728 1.22476 0.96219 0.97756 1.01858 1.22746 1.00931 0.94718 1.03471 1.23038 1.03731 1.01851 0.89521 0.94884 0.91690 0.96436 0.96420 0.91760 0.94738 0.92953 0.94973 0.94950 0.76169 0.90741 0.90929 0.86977 0.90397 0.87960 0.89059 0.89702 0.90432 0.90532 0.87464 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.09 71.98 0.58 -4.77 16 2 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 3 C -0.12 -5.35 8.04 71.99 0.58 -4.77 16 4 C -0.53 -28.70 8.01 25.60 0.20 -28.49 16 5 H 0.04 2.40 7.75 -2.91 -0.02 2.38 16 6 C 0.03 1.60 5.12 84.65 0.43 2.03 16 7 N -0.90 -48.20 9.36 21.45 0.20 -48.00 16 8 Si 0.94 43.12 29.54 68.60 2.03 45.14 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.17 7.75 4.50 86.37 0.39 8.14 16 13 N -0.73 -27.65 4.95 -478.54 -2.37 -30.02 16 14 C 0.71 27.04 8.31 179.06 1.49 28.52 16 15 O -0.63 -28.82 15.56 -4.00 -0.06 -28.89 16 16 N -0.63 -17.90 3.07 -805.89 -2.47 -20.37 16 17 C 0.09 1.71 6.66 86.85 0.58 2.29 16 18 C -0.12 -1.51 7.11 32.08 0.23 -1.29 16 19 C -0.11 -1.49 6.31 31.89 0.20 -1.29 16 20 C 0.18 4.18 3.05 45.34 0.14 4.32 16 21 H 0.05 1.42 7.96 -2.39 -0.02 1.41 16 22 C -0.16 -3.99 4.48 -10.80 -0.05 -4.04 16 23 C -0.18 -4.80 9.61 30.59 0.29 -4.51 16 24 C -0.14 -2.55 10.06 30.59 0.31 -2.25 16 25 H 0.03 1.27 7.01 -2.39 -0.02 1.26 16 26 H 0.06 3.28 6.02 -2.38 -0.01 3.27 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 3.22 6.04 -2.39 -0.01 3.20 16 30 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 31 H 0.26 13.44 8.31 -92.71 -0.77 12.66 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.40 13.47 4.60 -92.70 -0.43 13.05 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.43 7.13 -2.39 -0.02 1.41 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.04 7.85 -2.39 -0.02 1.03 16 41 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.14 348.97 3.21 -61.93 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.53 Total: 23.84 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.35 Total: -3.65 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -4.64 Total: -98.39 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.06 Total: -28.89 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.14 3.21 -61.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.508 kcal (2) G-P(sol) polarization free energy of solvation -65.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds