Wall clock time and date at job start Tue Mar 31 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47354 * 2 1 4 4 C 1.50698 * 109.47050 * 120.00366 * 2 1 3 5 5 H 1.08000 * 120.00340 * 119.50090 * 4 2 1 6 6 C 1.37881 * 120.00023 * 299.78023 * 4 2 1 7 7 N 1.31515 * 120.00061 * 193.91778 * 6 4 2 8 8 Si 1.86799 * 119.99802 * 13.91379 * 6 4 2 9 9 H 1.48506 * 109.47097 * 84.32905 * 8 6 4 10 10 H 1.48502 * 109.47451 * 204.32620 * 8 6 4 11 11 H 1.48499 * 109.47305 * 324.33122 * 8 6 4 12 12 C 1.53005 * 109.46711 * 239.99812 * 2 1 3 13 13 N 1.46496 * 109.46929 * 60.00566 * 12 2 1 14 14 C 1.34781 * 119.99764 * 179.97438 * 13 12 2 15 15 O 1.21586 * 119.99991 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99714 * 179.97438 * 14 13 12 17 17 C 1.47424 * 125.64845 * 356.97525 * 16 14 13 18 18 C 1.54920 * 104.82675 * 204.09195 * 17 16 14 19 19 C 1.55154 * 101.58327 * 322.98619 * 18 17 16 20 20 C 1.47029 * 125.64489 * 176.66545 * 16 14 13 21 21 H 1.08994 * 109.88192 * 59.56045 * 20 16 14 22 22 C 1.52993 * 109.87962 * 298.39589 * 20 16 14 23 23 C 1.53008 * 117.49666 * 241.39767 * 22 20 16 24 24 C 1.53007 * 117.49628 * 172.73849 * 22 20 16 25 25 H 1.09001 * 109.47215 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.47161 * 59.99641 * 1 2 3 27 27 H 1.09001 * 109.47583 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47308 * 188.62195 * 3 2 1 29 29 H 1.08997 * 109.47023 * 308.62229 * 3 2 1 30 30 H 1.08997 * 109.47217 * 68.62475 * 3 2 1 31 31 H 0.97006 * 119.99683 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46698 * 180.02562 * 12 2 1 33 33 H 1.08993 * 109.47492 * 300.00164 * 12 2 1 34 34 H 0.97002 * 120.00369 * 359.97438 * 13 12 2 35 35 H 1.08997 * 110.36601 * 322.92573 * 17 16 14 36 36 H 1.08991 * 110.37053 * 85.25444 * 17 16 14 37 37 H 1.08996 * 111.00400 * 81.06718 * 18 17 16 38 38 H 1.09006 * 110.99919 * 204.91225 * 18 17 16 39 39 H 1.08995 * 110.71958 * 153.86285 * 19 18 17 40 40 H 1.08993 * 110.72151 * 276.96484 * 19 18 17 41 41 H 1.09000 * 115.55669 * 27.06297 * 22 20 16 42 42 H 1.09007 * 117.49578 * 359.97438 * 23 22 20 43 43 H 1.08995 * 117.50057 * 145.02182 * 23 22 20 44 44 H 1.08993 * 117.49893 * 214.97528 * 24 22 20 45 45 H 1.08993 * 117.49755 * 359.97430 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6465 -1.5933 1.1313 6 6 1.7029 -0.2369 2.4827 7 7 2.3480 -0.6746 3.5419 8 14 0.3406 1.0266 2.6748 9 1 -0.9721 0.3344 2.7320 10 1 0.5503 1.7941 3.9287 11 1 0.3602 1.9558 1.5166 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0307 -2.4454 14 6 1.8776 -0.4909 -3.6695 15 8 2.5772 -1.4790 -3.7811 16 7 1.4279 0.1443 -4.7700 17 6 0.5252 1.3097 -4.7807 18 6 -0.1614 1.2665 -6.1688 19 6 0.9975 0.7726 -7.0744 20 6 1.7616 -0.2066 -6.1582 21 1 1.4477 -1.2291 -6.3679 22 6 3.2684 -0.0654 -6.3828 23 6 3.7347 0.9494 -7.4286 24 6 3.8318 -0.5503 -7.7201 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1191 1.4463 -0.1541 29 1 1.5564 1.9988 -0.8029 30 1 1.8080 1.9098 0.9569 31 1 2.1165 -0.3411 4.4229 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 0.9937 0.7579 -2.3564 35 1 -0.2171 1.2220 -3.9874 36 1 1.0950 2.2320 -4.6679 37 1 -0.9898 0.5581 -6.1730 38 1 -0.4967 2.2591 -6.4698 39 1 0.6080 0.2581 -7.9528 40 1 1.6382 1.6038 -7.3685 41 1 3.8901 -0.1971 -5.4972 42 1 2.9679 1.5161 -7.9570 43 1 4.6634 1.4849 -7.2313 44 1 4.8243 -1.0007 -7.7144 45 1 3.1291 -0.9702 -8.4396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:24 Heat of formation + Delta-G solvation = 19.114693 kcal Electronic energy + Delta-G solvation = -23027.621926 eV Core-core repulsion = 19853.928165 eV Total energy + Delta-G solvation = -3173.693761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40744 -38.42761 -36.64334 -36.03309 -33.24466 -31.75262 -31.05776 -28.88551 -26.37412 -25.94954 -24.94406 -23.78201 -22.81979 -21.99998 -20.48313 -19.30975 -18.91507 -17.80689 -16.62713 -16.10779 -15.90758 -15.32644 -14.98323 -14.61379 -14.36159 -14.01804 -13.44697 -13.25292 -13.01180 -12.89717 -12.69148 -12.55095 -12.46193 -12.17698 -12.05923 -11.73922 -11.48049 -11.28828 -11.15914 -10.79043 -10.48652 -10.40083 -10.29425 -10.13295 -10.02467 -9.99716 -9.72064 -9.11753 -8.70640 -8.67457 -8.45418 -8.21504 -6.13264 -4.10188 2.83614 3.24397 3.31697 3.38977 3.55670 3.70618 4.21083 4.34866 4.36792 4.56870 4.66015 4.72881 4.87213 4.93587 5.10346 5.15393 5.17656 5.38792 5.46130 5.54773 5.61337 5.63830 5.77370 5.78951 5.83306 5.97372 6.03908 6.07016 6.10647 6.13292 6.35578 6.40812 6.54748 6.56731 6.66083 6.73189 6.85923 7.03765 7.24977 7.34464 7.45732 7.74678 8.32673 8.48736 8.92172 8.99085 9.50730 10.99872 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.004097 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.106810 B = 6833.370100 C = 7311.387624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 C -0.143 4.143 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.881 3.119 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.246 1.246 12 C 0.160 3.840 13 N -0.737 5.737 14 C 0.717 3.283 15 O -0.590 6.590 16 N -0.636 5.636 17 C 0.099 3.901 18 C -0.130 4.130 19 C -0.141 4.141 20 C 0.189 3.811 21 H 0.076 0.924 22 C -0.153 4.153 23 C -0.191 4.191 24 C -0.174 4.174 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.391 0.609 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 7.256 -22.007 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.200 4.200 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.038 3.962 13 N -0.391 5.391 14 C 0.419 3.581 15 O -0.468 6.468 16 N -0.375 5.375 17 C -0.025 4.025 18 C -0.168 4.168 19 C -0.179 4.179 20 C 0.085 3.915 21 H 0.094 0.906 22 C -0.173 4.173 23 C -0.228 4.228 24 C -0.211 4.211 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.009 6.450 -21.750 23.037 hybrid contribution -1.019 1.008 0.446 1.501 sum -5.028 7.458 -21.304 23.125 Atomic orbital electron populations 1.22299 0.98739 1.00753 0.98304 1.18730 0.91639 0.93143 0.93796 1.22332 1.00216 0.97561 0.99899 1.20715 1.32839 1.13454 0.87955 0.90514 1.24965 0.95968 0.95959 0.95799 1.69956 1.39382 1.44543 0.98923 0.87394 0.82595 0.82394 0.76255 1.21349 1.23330 1.17217 1.21370 0.98440 0.95334 0.81098 1.45533 1.55919 1.33088 1.04599 1.15547 0.80310 0.82457 0.79780 1.90905 1.43032 1.27299 1.85530 1.47628 1.51607 1.33502 1.04798 1.22239 0.92640 0.89332 0.98259 1.22741 0.97673 1.02175 0.94246 1.23049 0.97202 0.99850 0.97780 1.20765 0.91850 0.98610 0.80291 0.90608 1.22712 0.96523 1.03859 0.94177 1.23291 1.03112 0.92468 1.03909 1.22899 1.02501 0.96794 0.98955 0.94149 0.95421 0.92812 0.93393 0.96090 0.92372 0.92584 0.92116 0.92251 0.77422 0.90938 0.91636 0.90605 0.89912 0.90159 0.89102 0.87034 0.87826 0.89166 0.88922 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.60 37.16 0.28 -2.67 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.14 -2.95 7.52 37.15 0.28 -2.67 16 4 C -0.51 -13.89 8.62 -34.44 -0.30 -14.19 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.08 2.11 5.33 -17.82 -0.09 2.02 16 7 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 8 Si 0.88 21.05 22.77 -169.99 -3.87 17.18 16 9 H -0.29 -6.81 7.09 56.52 0.40 -6.41 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.25 -5.33 4.61 56.52 0.26 -5.07 16 12 C 0.16 3.35 4.49 -4.04 -0.02 3.33 16 13 N -0.74 -12.93 4.96 -65.22 -0.32 -13.25 16 14 C 0.72 12.86 8.09 -86.91 -0.70 12.16 16 15 O -0.59 -12.83 15.83 5.29 0.08 -12.74 16 16 N -0.64 -8.70 3.06 -168.68 -0.52 -9.21 16 17 C 0.10 0.99 6.51 -2.52 -0.02 0.97 16 18 C -0.13 -0.96 7.09 -24.58 -0.17 -1.14 16 19 C -0.14 -1.10 5.95 -24.89 -0.15 -1.24 16 20 C 0.19 2.21 3.18 -66.94 -0.21 2.00 16 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 22 C -0.15 -1.85 5.65 -90.62 -0.51 -2.36 16 23 C -0.19 -1.74 9.51 -26.68 -0.25 -2.00 16 24 C -0.17 -1.69 10.20 -26.68 -0.27 -1.96 16 25 H 0.04 0.87 2.45 -51.93 -0.13 0.74 16 26 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.02 0.36 7.11 -51.93 -0.37 -0.01 16 30 H 0.06 1.27 4.03 -51.93 -0.21 1.06 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.39 6.04 4.80 -40.82 -0.20 5.84 16 35 H 0.07 0.71 7.42 -51.93 -0.39 0.32 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.64 4.94 -51.93 -0.26 0.38 16 41 H 0.11 1.74 7.24 -51.93 -0.38 1.36 16 42 H 0.10 0.76 5.38 -51.93 -0.28 0.48 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -31.78 333.83 -8.37 -40.15 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.32 Total: 6.09 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.22 Total: -7.20 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.07 Total: -48.49 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.87 Total: 17.18 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.78 -8.37 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.261 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds