Wall clock time and date at job start Tue Mar 31 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47354 * 2 1 4 4 C 1.50698 * 109.47050 * 120.00366 * 2 1 3 5 5 H 1.08000 * 120.00340 * 119.50090 * 4 2 1 6 6 C 1.37881 * 120.00023 * 299.78023 * 4 2 1 7 7 N 1.31515 * 120.00061 * 193.91778 * 6 4 2 8 8 Si 1.86799 * 119.99802 * 13.91379 * 6 4 2 9 9 H 1.48506 * 109.47097 * 84.32905 * 8 6 4 10 10 H 1.48502 * 109.47451 * 204.32620 * 8 6 4 11 11 H 1.48499 * 109.47305 * 324.33122 * 8 6 4 12 12 C 1.53005 * 109.46711 * 239.99812 * 2 1 3 13 13 N 1.46496 * 109.46929 * 60.00566 * 12 2 1 14 14 C 1.34781 * 119.99764 * 179.97438 * 13 12 2 15 15 O 1.21586 * 119.99991 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99714 * 179.97438 * 14 13 12 17 17 C 1.47424 * 125.64845 * 356.97525 * 16 14 13 18 18 C 1.54920 * 104.82675 * 204.09195 * 17 16 14 19 19 C 1.55154 * 101.58327 * 322.98619 * 18 17 16 20 20 C 1.47029 * 125.64489 * 176.66545 * 16 14 13 21 21 H 1.08994 * 109.88192 * 59.56045 * 20 16 14 22 22 C 1.52993 * 109.87962 * 298.39589 * 20 16 14 23 23 C 1.53008 * 117.49666 * 241.39767 * 22 20 16 24 24 C 1.53007 * 117.49628 * 172.73849 * 22 20 16 25 25 H 1.09001 * 109.47215 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.47161 * 59.99641 * 1 2 3 27 27 H 1.09001 * 109.47583 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47308 * 188.62195 * 3 2 1 29 29 H 1.08997 * 109.47023 * 308.62229 * 3 2 1 30 30 H 1.08997 * 109.47217 * 68.62475 * 3 2 1 31 31 H 0.97006 * 119.99683 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46698 * 180.02562 * 12 2 1 33 33 H 1.08993 * 109.47492 * 300.00164 * 12 2 1 34 34 H 0.97002 * 120.00369 * 359.97438 * 13 12 2 35 35 H 1.08997 * 110.36601 * 322.92573 * 17 16 14 36 36 H 1.08991 * 110.37053 * 85.25444 * 17 16 14 37 37 H 1.08996 * 111.00400 * 81.06718 * 18 17 16 38 38 H 1.09006 * 110.99919 * 204.91225 * 18 17 16 39 39 H 1.08995 * 110.71958 * 153.86285 * 19 18 17 40 40 H 1.08993 * 110.72151 * 276.96484 * 19 18 17 41 41 H 1.09000 * 115.55669 * 27.06297 * 22 20 16 42 42 H 1.09007 * 117.49578 * 359.97438 * 23 22 20 43 43 H 1.08995 * 117.50057 * 145.02182 * 23 22 20 44 44 H 1.08993 * 117.49893 * 214.97528 * 24 22 20 45 45 H 1.08993 * 117.49755 * 359.97430 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6465 -1.5933 1.1313 6 6 1.7029 -0.2369 2.4827 7 7 2.3480 -0.6746 3.5419 8 14 0.3406 1.0266 2.6748 9 1 -0.9721 0.3344 2.7320 10 1 0.5503 1.7941 3.9287 11 1 0.3602 1.9558 1.5166 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0307 -2.4454 14 6 1.8776 -0.4909 -3.6695 15 8 2.5772 -1.4790 -3.7811 16 7 1.4279 0.1443 -4.7700 17 6 0.5252 1.3097 -4.7807 18 6 -0.1614 1.2665 -6.1688 19 6 0.9975 0.7726 -7.0744 20 6 1.7616 -0.2066 -6.1582 21 1 1.4477 -1.2291 -6.3679 22 6 3.2684 -0.0654 -6.3828 23 6 3.7347 0.9494 -7.4286 24 6 3.8318 -0.5503 -7.7201 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1191 1.4463 -0.1541 29 1 1.5564 1.9988 -0.8029 30 1 1.8080 1.9098 0.9569 31 1 2.1165 -0.3411 4.4229 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -1.7489 -1.2493 34 1 0.9937 0.7579 -2.3564 35 1 -0.2171 1.2220 -3.9874 36 1 1.0950 2.2320 -4.6679 37 1 -0.9898 0.5581 -6.1730 38 1 -0.4967 2.2591 -6.4698 39 1 0.6080 0.2581 -7.9528 40 1 1.6382 1.6038 -7.3685 41 1 3.8901 -0.1971 -5.4972 42 1 2.9679 1.5161 -7.9570 43 1 4.6634 1.4849 -7.2313 44 1 4.8243 -1.0007 -7.7144 45 1 3.1291 -0.9702 -8.4396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:23 Heat of formation + Delta-G solvation = -2.251857 kcal Electronic energy + Delta-G solvation = -23028.548450 eV Core-core repulsion = 19853.928165 eV Total energy + Delta-G solvation = -3174.620284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54339 -39.65611 -38.26086 -36.96488 -34.97058 -33.52078 -32.21202 -29.70754 -28.03457 -27.53669 -26.90843 -24.85573 -23.58049 -22.81647 -21.57561 -20.94618 -20.19981 -19.01031 -18.08023 -17.55063 -17.16261 -16.82699 -16.41341 -15.91592 -15.61254 -14.96241 -14.93845 -14.79562 -14.48005 -14.13857 -14.03359 -13.88930 -13.78302 -13.54025 -13.32584 -12.94338 -12.42531 -12.39197 -12.16719 -12.08800 -11.94884 -11.93593 -11.76840 -11.46569 -11.36190 -11.15452 -11.04805 -10.79061 -10.62451 -10.39832 -10.15333 -9.44087 -8.30321 -6.32480 1.36593 1.38168 1.51286 1.63779 2.16626 2.35134 2.89733 3.04461 3.09488 3.66653 3.70003 3.89307 4.03597 4.05934 4.10638 4.16822 4.31289 4.38160 4.39934 4.42565 4.65660 4.72846 4.76182 4.81228 4.82793 4.85215 4.91798 4.98654 5.03281 5.05155 5.08602 5.12602 5.16216 5.23573 5.26465 5.40532 5.42794 5.52898 5.54628 5.72257 5.78498 6.10821 6.30671 6.71207 7.04873 7.32174 7.60824 8.87036 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.004097 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.106810 B = 6833.370100 C = 7311.387624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.140 4.140 4 C -0.520 4.520 5 H 0.025 0.975 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.313 1.313 11 H -0.199 1.199 12 C 0.178 3.822 13 N -0.725 5.725 14 C 0.711 3.289 15 O -0.639 6.639 16 N -0.632 5.632 17 C 0.086 3.914 18 C -0.120 4.120 19 C -0.129 4.129 20 C 0.182 3.818 21 H 0.055 0.945 22 C -0.183 4.183 23 C -0.166 4.166 24 C -0.171 4.171 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.406 0.594 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 10.820 -25.296 28.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.197 4.197 4 C -0.558 4.558 5 H 0.043 0.957 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.207 1.207 10 H -0.242 1.242 11 H -0.123 1.123 12 C 0.053 3.947 13 N -0.381 5.381 14 C 0.413 3.587 15 O -0.521 6.521 16 N -0.370 5.370 17 C -0.036 4.036 18 C -0.158 4.158 19 C -0.167 4.167 20 C 0.078 3.922 21 H 0.073 0.927 22 C -0.202 4.202 23 C -0.202 4.202 24 C -0.208 4.208 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.899 10.064 -25.113 27.920 hybrid contribution 0.002 -0.230 1.411 1.429 sum -6.897 9.833 -23.702 26.572 Atomic orbital electron populations 1.22217 0.96454 1.01066 1.00144 1.18652 0.93344 0.93737 0.91540 1.22244 1.00153 0.96320 1.01019 1.21002 1.31940 1.12232 0.90618 0.95672 1.25883 0.98401 0.98686 0.95091 1.70122 1.41702 1.47097 0.99647 0.86403 0.78724 0.80394 0.77403 1.20741 1.24225 1.12263 1.20867 0.96762 0.94597 0.82443 1.45134 1.56146 1.33275 1.03565 1.15733 0.80058 0.82259 0.80690 1.90867 1.45192 1.29704 1.86358 1.47684 1.51108 1.33853 1.04306 1.22623 0.92417 0.88024 1.00535 1.22763 0.97058 1.03970 0.91984 1.23055 0.96954 0.99192 0.97462 1.20997 0.92149 0.99052 0.80021 0.92660 1.22531 0.96361 1.07708 0.93624 1.23398 1.03518 0.92026 1.01273 1.22999 1.02453 0.97827 0.97548 0.94460 0.91072 0.93610 0.94360 0.91755 0.93104 0.92625 0.94803 0.94483 0.75691 0.90290 0.90310 0.90518 0.86770 0.88025 0.87693 0.91775 0.84937 0.89239 0.89573 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 7.60 71.98 0.55 -4.86 16 2 C 0.03 1.25 0.50 -52.93 -0.03 1.22 16 3 C -0.14 -5.45 7.52 71.98 0.54 -4.91 16 4 C -0.52 -29.41 8.62 25.60 0.22 -29.19 16 5 H 0.02 1.62 7.99 -2.91 -0.02 1.60 16 6 C 0.02 0.96 5.33 84.66 0.45 1.41 16 7 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.94 42.59 22.77 68.60 1.56 44.15 16 9 H -0.28 -12.39 7.09 99.48 0.71 -11.68 16 10 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.20 -7.52 4.61 99.48 0.46 -7.06 16 12 C 0.18 7.65 4.49 86.38 0.39 8.04 16 13 N -0.72 -24.82 4.96 -478.53 -2.37 -27.19 16 14 C 0.71 25.70 8.09 179.05 1.45 27.15 16 15 O -0.64 -29.36 15.83 -3.99 -0.06 -29.42 16 16 N -0.63 -16.41 3.06 -805.85 -2.47 -18.88 16 17 C 0.09 1.39 6.51 86.86 0.57 1.95 16 18 C -0.12 -1.18 7.09 31.99 0.23 -0.95 16 19 C -0.13 -1.45 5.95 31.79 0.19 -1.26 16 20 C 0.18 3.99 3.18 45.34 0.14 4.13 16 21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 22 C -0.18 -4.36 5.65 -10.79 -0.06 -4.42 16 23 C -0.17 -2.60 9.51 30.62 0.29 -2.31 16 24 C -0.17 -3.10 10.20 30.62 0.31 -2.79 16 25 H 0.04 1.45 2.45 -2.39 -0.01 1.45 16 26 H 0.07 2.09 6.86 -2.39 -0.02 2.07 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.06 1.94 7.11 -2.39 -0.02 1.93 16 30 H 0.05 2.05 4.03 -2.39 -0.01 2.04 16 31 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 32 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 11.20 4.80 -92.71 -0.44 10.76 16 35 H 0.08 1.19 7.42 -2.39 -0.02 1.17 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.90 4.94 -2.39 -0.01 0.89 16 41 H 0.06 2.14 7.24 -2.39 -0.02 2.13 16 42 H 0.13 1.30 5.38 -2.38 -0.01 1.29 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.42 333.83 2.48 -73.94 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.29 Total: 23.32 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.24 Total: -6.77 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.54 Total: -105.21 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.06 Total: -29.42 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.56 Total: 44.15 kcal Total: -76.42 2.48 -73.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds