Wall clock time and date at job start Tue Mar 31 2020 02:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47507 * 2 1 4 4 C 1.50702 * 109.47218 * 239.99915 * 2 1 3 5 5 H 1.08001 * 119.99801 * 237.01299 * 4 2 1 6 6 C 1.37880 * 119.99983 * 57.00704 * 4 2 1 7 7 N 1.31515 * 119.99930 * 5.54168 * 6 4 2 8 8 Si 1.86795 * 119.99865 * 185.54466 * 6 4 2 9 9 H 1.48506 * 109.47377 * 85.00008 * 8 6 4 10 10 H 1.48505 * 109.47084 * 205.00123 * 8 6 4 11 11 H 1.48503 * 109.47407 * 325.00042 * 8 6 4 12 12 C 1.53000 * 109.46878 * 119.99970 * 2 1 3 13 13 N 1.46497 * 109.47016 * 299.99825 * 12 2 1 14 14 C 1.34780 * 119.99821 * 180.27231 * 13 12 2 15 15 O 1.21581 * 120.00098 * 359.73120 * 14 13 12 16 16 N 1.34777 * 120.00027 * 179.72093 * 14 13 12 17 17 C 1.46496 * 120.00179 * 180.02562 * 16 14 13 18 18 C 1.52995 * 115.55099 * 180.02562 * 17 16 14 19 19 C 1.53775 * 113.61798 * 63.08332 * 18 17 16 20 20 C 1.53786 * 87.08231 * 220.01900 * 19 18 17 21 21 C 1.53780 * 113.61429 * 325.58241 * 18 17 16 22 22 C 1.53002 * 117.49586 * 34.33692 * 17 16 14 23 23 C 1.53001 * 117.49884 * 325.67861 * 17 16 14 24 24 H 1.08993 * 109.46967 * 293.93426 * 1 2 3 25 25 H 1.09003 * 109.46596 * 53.93572 * 1 2 3 26 26 H 1.08998 * 109.47035 * 173.92818 * 1 2 3 27 27 H 1.08990 * 109.47220 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46671 * 300.00085 * 3 2 1 29 29 H 1.09002 * 109.46884 * 59.99149 * 3 2 1 30 30 H 0.97001 * 119.99641 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46829 * 179.97438 * 12 2 1 32 32 H 1.08995 * 109.47158 * 60.00127 * 12 2 1 33 33 H 0.96995 * 119.99922 * 0.02562 * 13 12 2 34 34 H 0.97000 * 119.99905 * 0.02562 * 16 14 13 35 35 H 1.09006 * 112.85034 * 194.38757 * 18 17 16 36 36 H 1.09008 * 113.61379 * 334.56826 * 19 18 17 37 37 H 1.08999 * 113.61740 * 105.46685 * 19 18 17 38 38 H 1.08997 * 113.61138 * 270.87656 * 20 19 18 39 39 H 1.09004 * 113.60793 * 139.97983 * 20 19 18 40 40 H 1.08998 * 113.61589 * 254.52921 * 21 18 17 41 41 H 1.08995 * 113.61313 * 25.43548 * 21 18 17 42 42 H 1.08998 * 117.49877 * 359.97438 * 22 17 16 43 43 H 1.09004 * 117.49811 * 145.02174 * 22 17 16 44 44 H 1.09002 * 117.49530 * 214.97431 * 23 17 16 45 45 H 1.09003 * 117.50115 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2471 -3.9991 9 1 1.1619 -2.3363 -4.2323 10 1 2.1709 -0.3440 -5.1776 11 1 3.4932 -1.8329 -3.7937 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8817 -0.4879 3.6695 15 8 2.5807 -1.4764 3.7811 16 7 1.4371 0.1508 4.7699 17 6 1.7964 -0.3459 6.1005 18 6 1.2364 0.4555 7.2773 19 6 -0.2996 0.4521 7.3498 20 6 -0.2059 1.9355 7.7445 21 6 1.1419 1.9660 7.0046 22 6 3.1803 -0.9761 6.2693 23 6 1.9304 -1.8597 6.2770 24 1 -0.3633 0.4169 0.9392 25 1 -0.3632 0.6050 -0.8308 26 1 -0.3633 -1.0219 -0.1087 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.6652 1.1259 -3.4875 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7578 2.3563 34 1 0.8793 0.9393 4.6809 35 1 1.7200 0.2121 8.2235 36 1 -0.7818 0.2862 6.3863 37 1 -0.6982 -0.1854 8.1390 38 1 -0.1181 2.0967 8.8189 39 1 -0.9716 2.5592 7.2830 40 1 1.9071 2.5506 7.5152 41 1 1.0538 2.2140 5.9469 42 1 3.8232 -1.0216 5.3904 43 1 3.6919 -0.8199 7.2191 44 1 1.6203 -2.2844 7.2318 45 1 1.7508 -2.4862 5.4033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593411742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:23 Heat of formation + Delta-G solvation = 13.224879 kcal Electronic energy + Delta-G solvation = -22753.227484 eV Core-core repulsion = 19579.278321 eV Total energy + Delta-G solvation = -3173.949163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53246 -38.79169 -36.75190 -35.47762 -33.43325 -32.31478 -30.50681 -26.44613 -25.84418 -25.71597 -25.52877 -24.74276 -22.14232 -21.44023 -20.40436 -19.13846 -18.62031 -18.37029 -16.18320 -15.81685 -15.66421 -14.91678 -14.88903 -14.65417 -14.17156 -13.68410 -13.41060 -13.06066 -12.86465 -12.78245 -12.61709 -12.60508 -12.15587 -11.48123 -11.27209 -11.18786 -11.16102 -11.01381 -10.80778 -10.76277 -10.67934 -10.41026 -10.31697 -10.19968 -9.94473 -9.60434 -9.50252 -9.28084 -8.78208 -8.52623 -8.37215 -8.09226 -6.01508 -4.10077 3.03045 3.29981 3.36334 3.40430 3.49360 4.01137 4.37153 4.39545 4.42975 4.53298 4.62915 4.76265 4.95802 5.10581 5.25757 5.34660 5.40338 5.51519 5.53335 5.69778 5.73200 5.76665 5.88445 5.97063 6.19722 6.23001 6.28900 6.38224 6.52484 6.58459 6.81721 6.83543 6.86079 6.92511 7.04481 7.12698 7.33349 7.43482 7.57227 7.71673 8.00949 8.13262 8.39280 8.50949 8.89512 9.07626 9.55243 11.00557 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.003635 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.835939 B = 7701.773360 C = 8212.010122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.152 3.848 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.593 6.593 16 N -0.718 5.718 17 C 0.126 3.874 18 C -0.072 4.072 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.178 4.178 23 C -0.175 4.175 24 H 0.006 0.994 25 H 0.080 0.920 26 H 0.029 0.971 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.004 0.996 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.392 0.608 34 H 0.394 0.606 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 3.194 18.964 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.029 3.971 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.472 6.472 16 N -0.373 5.373 17 C 0.038 3.962 18 C -0.091 4.091 19 C -0.172 4.172 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.216 4.216 23 C -0.214 4.214 24 H 0.025 0.975 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.230 0.770 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.965 2.402 18.850 19.104 hybrid contribution -0.251 0.203 -0.992 1.043 sum -2.216 2.605 17.858 18.183 Atomic orbital electron populations 1.21788 0.97764 1.00097 0.98853 1.18366 0.92754 0.92771 0.90616 1.21830 0.98569 0.98343 0.99890 1.20972 1.29319 1.14320 0.89927 0.92424 1.24873 0.95000 0.94771 0.98787 1.69830 1.37897 1.21417 1.23246 0.86599 0.79055 0.79913 0.82369 1.20635 1.21358 1.19955 1.21551 0.97819 0.95395 0.82352 1.45549 1.55474 1.33107 1.04609 1.16059 0.80551 0.83033 0.80512 1.90833 1.42934 1.27617 1.85797 1.44463 1.56724 1.32742 1.03396 1.20151 0.99823 0.93636 0.82611 1.22199 0.96193 0.94711 0.95990 1.22951 0.95522 0.96555 1.02183 1.22847 0.97777 0.97031 1.00485 1.22938 0.97749 0.95732 1.00972 1.23445 0.91592 1.03544 1.03054 1.23389 1.01816 0.93173 1.03017 0.97540 0.90100 0.95227 0.95489 0.89676 0.97662 0.93047 0.93006 0.92974 0.77318 0.77041 0.87904 0.89803 0.91349 0.90186 0.91285 0.91164 0.90005 0.87029 0.89636 0.89633 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.03 37.16 0.30 -2.57 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.91 8.11 37.16 0.30 -2.61 16 4 C -0.51 -13.35 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.89 -23.65 9.45 55.43 0.52 -23.12 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 13 N -0.73 -13.20 4.91 -65.23 -0.32 -13.53 16 14 C 0.70 12.37 8.27 -86.91 -0.72 11.65 16 15 O -0.59 -12.33 11.82 5.29 0.06 -12.26 16 16 N -0.72 -9.75 5.38 -52.42 -0.28 -10.03 16 17 C 0.13 1.55 2.65 -131.82 -0.35 1.21 16 18 C -0.07 -0.65 3.77 -89.81 -0.34 -0.99 16 19 C -0.13 -1.11 7.63 -25.92 -0.20 -1.31 16 20 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 21 C -0.14 -1.12 7.48 -25.92 -0.19 -1.31 16 22 C -0.18 -2.40 9.43 -26.69 -0.25 -2.66 16 23 C -0.18 -2.37 9.44 -26.69 -0.25 -2.62 16 24 H 0.01 0.11 6.71 -51.93 -0.35 -0.24 16 25 H 0.08 2.00 6.25 -51.93 -0.32 1.68 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 2.13 6.10 -51.93 -0.32 1.81 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.39 6.38 6.17 -40.82 -0.25 6.13 16 34 H 0.39 4.45 6.80 -40.82 -0.28 4.17 16 35 H 0.10 0.83 8.13 -51.93 -0.42 0.40 16 36 H 0.08 0.77 8.09 -51.92 -0.42 0.35 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.70 6.15 -51.93 -0.32 0.38 16 42 H 0.11 1.88 6.37 -51.93 -0.33 1.55 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.11 1.87 6.37 -51.93 -0.33 1.54 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -28.25 344.94 -9.68 -37.94 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.47 Total: 9.93 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.38 Total: -9.93 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.08 Total: -46.68 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.06 Total: -12.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.25 -9.68 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593411742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.160 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds