Wall clock time and date at job start Tue Mar 31 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47507 * 2 1 4 4 C 1.50702 * 109.47218 * 239.99915 * 2 1 3 5 5 H 1.08001 * 119.99801 * 237.01299 * 4 2 1 6 6 C 1.37880 * 119.99983 * 57.00704 * 4 2 1 7 7 N 1.31515 * 119.99930 * 5.54168 * 6 4 2 8 8 Si 1.86795 * 119.99865 * 185.54466 * 6 4 2 9 9 H 1.48506 * 109.47377 * 85.00008 * 8 6 4 10 10 H 1.48505 * 109.47084 * 205.00123 * 8 6 4 11 11 H 1.48503 * 109.47407 * 325.00042 * 8 6 4 12 12 C 1.53000 * 109.46878 * 119.99970 * 2 1 3 13 13 N 1.46497 * 109.47016 * 299.99825 * 12 2 1 14 14 C 1.34780 * 119.99821 * 180.27231 * 13 12 2 15 15 O 1.21581 * 120.00098 * 359.73120 * 14 13 12 16 16 N 1.34777 * 120.00027 * 179.72093 * 14 13 12 17 17 C 1.46496 * 120.00179 * 180.02562 * 16 14 13 18 18 C 1.52995 * 115.55099 * 180.02562 * 17 16 14 19 19 C 1.53775 * 113.61798 * 63.08332 * 18 17 16 20 20 C 1.53786 * 87.08231 * 220.01900 * 19 18 17 21 21 C 1.53780 * 113.61429 * 325.58241 * 18 17 16 22 22 C 1.53002 * 117.49586 * 34.33692 * 17 16 14 23 23 C 1.53001 * 117.49884 * 325.67861 * 17 16 14 24 24 H 1.08993 * 109.46967 * 293.93426 * 1 2 3 25 25 H 1.09003 * 109.46596 * 53.93572 * 1 2 3 26 26 H 1.08998 * 109.47035 * 173.92818 * 1 2 3 27 27 H 1.08990 * 109.47220 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46671 * 300.00085 * 3 2 1 29 29 H 1.09002 * 109.46884 * 59.99149 * 3 2 1 30 30 H 0.97001 * 119.99641 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46829 * 179.97438 * 12 2 1 32 32 H 1.08995 * 109.47158 * 60.00127 * 12 2 1 33 33 H 0.96995 * 119.99922 * 0.02562 * 13 12 2 34 34 H 0.97000 * 119.99905 * 0.02562 * 16 14 13 35 35 H 1.09006 * 112.85034 * 194.38757 * 18 17 16 36 36 H 1.09008 * 113.61379 * 334.56826 * 19 18 17 37 37 H 1.08999 * 113.61740 * 105.46685 * 19 18 17 38 38 H 1.08997 * 113.61138 * 270.87656 * 20 19 18 39 39 H 1.09004 * 113.60793 * 139.97983 * 20 19 18 40 40 H 1.08998 * 113.61589 * 254.52921 * 21 18 17 41 41 H 1.08995 * 113.61313 * 25.43548 * 21 18 17 42 42 H 1.08998 * 117.49877 * 359.97438 * 22 17 16 43 43 H 1.09004 * 117.49811 * 145.02174 * 22 17 16 44 44 H 1.09002 * 117.49530 * 214.97431 * 23 17 16 45 45 H 1.09003 * 117.50115 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4818 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2471 -3.9991 9 1 1.1619 -2.3363 -4.2323 10 1 2.1709 -0.3440 -5.1776 11 1 3.4932 -1.8329 -3.7937 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8817 -0.4879 3.6695 15 8 2.5807 -1.4764 3.7811 16 7 1.4371 0.1508 4.7699 17 6 1.7964 -0.3459 6.1005 18 6 1.2364 0.4555 7.2773 19 6 -0.2996 0.4521 7.3498 20 6 -0.2059 1.9355 7.7445 21 6 1.1419 1.9660 7.0046 22 6 3.1803 -0.9761 6.2693 23 6 1.9304 -1.8597 6.2770 24 1 -0.3633 0.4169 0.9392 25 1 -0.3632 0.6050 -0.8308 26 1 -0.3633 -1.0219 -0.1087 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 0.6652 1.1259 -3.4875 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7578 2.3563 34 1 0.8793 0.9393 4.6809 35 1 1.7200 0.2121 8.2235 36 1 -0.7818 0.2862 6.3863 37 1 -0.6982 -0.1854 8.1390 38 1 -0.1181 2.0967 8.8189 39 1 -0.9716 2.5592 7.2830 40 1 1.9071 2.5506 7.5152 41 1 1.0538 2.2140 5.9469 42 1 3.8232 -1.0216 5.3904 43 1 3.6919 -0.8199 7.2191 44 1 1.6203 -2.2844 7.2318 45 1 1.7508 -2.4862 5.4033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593411742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:22 Heat of formation + Delta-G solvation = -2.557494 kcal Electronic energy + Delta-G solvation = -22753.911859 eV Core-core repulsion = 19579.278321 eV Total energy + Delta-G solvation = -3174.633538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70109 -39.87876 -38.28752 -36.71270 -35.05389 -33.83688 -32.24323 -27.57206 -27.54174 -27.19716 -26.49215 -26.41124 -23.21334 -22.72048 -21.38481 -20.58035 -19.92470 -19.70681 -17.82001 -17.26090 -16.57746 -16.41098 -16.30701 -16.24909 -15.27407 -15.10621 -14.73290 -14.68840 -14.49709 -14.00742 -13.66813 -13.34287 -13.29014 -13.25961 -13.07941 -12.72112 -12.60233 -12.29523 -12.20247 -12.14450 -12.08102 -11.93976 -11.47538 -11.38397 -11.24540 -11.10983 -11.03649 -10.72759 -10.68136 -10.39131 -9.97618 -9.39894 -8.03231 -6.17518 1.42775 1.45159 1.52702 1.74154 2.12787 2.46098 2.97904 3.20759 3.30246 3.63828 3.70939 3.83841 4.05766 4.09721 4.24529 4.36588 4.43163 4.53297 4.64647 4.71295 4.85264 4.89186 4.90677 4.96643 4.99189 5.05086 5.08648 5.13075 5.16662 5.17638 5.19290 5.32536 5.39131 5.44725 5.60607 5.64954 5.66810 5.67984 5.74136 6.06941 6.13402 6.21265 6.43064 6.86248 7.16075 7.49744 7.66098 8.96370 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.003635 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.835939 B = 7701.773360 C = 8212.010122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.171 3.829 13 N -0.727 5.727 14 C 0.695 3.305 15 O -0.625 6.625 16 N -0.702 5.702 17 C 0.132 3.868 18 C -0.069 4.069 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.139 4.139 22 C -0.184 4.184 23 C -0.181 4.181 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.403 0.597 34 H 0.409 0.591 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 4.303 21.003 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.046 3.954 13 N -0.383 5.383 14 C 0.395 3.605 15 O -0.507 6.507 16 N -0.358 5.358 17 C 0.044 3.956 18 C -0.087 4.087 19 C -0.173 4.173 20 C -0.171 4.171 21 C -0.176 4.176 22 C -0.223 4.223 23 C -0.220 4.220 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.240 0.760 34 H 0.246 0.754 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.804 3.549 20.918 21.401 hybrid contribution 0.021 -0.163 -1.591 1.600 sum -2.784 3.386 19.327 19.818 Atomic orbital electron populations 1.21621 0.97027 0.99105 0.99612 1.18362 0.93260 0.93046 0.90244 1.21657 0.97817 0.97806 1.00239 1.21254 1.29612 1.14453 0.91649 0.93820 1.25437 0.95158 0.95550 1.00856 1.69927 1.38124 1.21922 1.23661 0.85790 0.78523 0.78836 0.79752 1.20420 1.20799 1.20162 1.21064 0.96523 0.94593 0.83177 1.45249 1.55764 1.33303 1.03937 1.16205 0.80350 0.82836 0.81113 1.90834 1.44342 1.29192 1.86305 1.44345 1.55894 1.32572 1.02951 1.20526 0.98886 0.93388 0.82774 1.22334 0.96740 0.94707 0.94954 1.22951 0.94595 0.97759 1.02013 1.22820 0.97037 0.96014 1.01251 1.22971 0.98778 0.94961 1.00934 1.23385 0.91631 1.04428 1.02857 1.23310 1.02332 0.93574 1.02786 0.94433 0.92141 0.96436 0.96478 0.91909 0.94587 0.93024 0.94844 0.94761 0.76025 0.75358 0.86036 0.90979 0.90406 0.88748 0.90895 0.90370 0.90640 0.90798 0.86748 0.86868 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.03 71.98 0.58 -4.60 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.26 8.11 71.98 0.58 -4.68 16 4 C -0.53 -28.47 8.01 25.60 0.20 -28.27 16 5 H 0.04 2.40 7.75 -2.91 -0.02 2.38 16 6 C 0.03 1.59 5.13 84.66 0.43 2.03 16 7 N -0.90 -48.06 9.45 21.45 0.20 -47.86 16 8 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.17 7.47 4.50 86.38 0.39 7.86 16 13 N -0.73 -25.82 4.91 -478.55 -2.35 -28.17 16 14 C 0.69 24.56 8.27 179.05 1.48 26.04 16 15 O -0.63 -26.78 11.82 -3.97 -0.05 -26.82 16 16 N -0.70 -18.21 5.38 -438.02 -2.36 -20.57 16 17 C 0.13 3.04 2.65 3.60 0.01 3.05 16 18 C -0.07 -1.02 3.77 -10.27 -0.04 -1.06 16 19 C -0.14 -1.82 7.63 31.12 0.24 -1.58 16 20 C -0.13 -1.44 8.08 31.12 0.25 -1.18 16 21 C -0.14 -1.83 7.48 31.12 0.23 -1.59 16 22 C -0.18 -4.84 9.43 30.62 0.29 -4.55 16 23 C -0.18 -4.77 9.44 30.62 0.29 -4.48 16 24 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 25 H 0.06 2.97 6.25 -2.39 -0.01 2.95 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 3.12 6.10 -2.38 -0.01 3.11 16 29 H 0.04 1.34 6.86 -2.39 -0.02 1.33 16 30 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.40 12.39 6.17 -92.71 -0.57 11.82 16 34 H 0.41 8.37 6.80 -92.71 -0.63 7.74 16 35 H 0.12 1.44 8.13 -2.38 -0.02 1.42 16 36 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 1.08 6.15 -2.39 -0.01 1.07 16 42 H 0.07 2.55 6.37 -2.39 -0.02 2.53 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 45 H 0.07 2.56 6.37 -2.39 -0.02 2.54 16 Total: -1.00 -62.23 344.94 2.17 -60.05 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.22 Total: 29.01 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 4.91 Total: -10.63 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -4.50 Total: -96.60 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -62.23 2.17 -60.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593411742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.497 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds