Wall clock time and date at job start Tue Mar 31 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47240 * 239.99968 * 2 1 3 5 5 H 1.08002 * 120.00413 * 239.99749 * 4 2 1 6 6 C 1.37879 * 119.99812 * 60.00061 * 4 2 1 7 7 N 1.31514 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99766 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47362 * 60.00013 * 8 6 4 10 10 H 1.48501 * 109.46786 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47091 * 299.99611 * 8 6 4 12 12 C 1.53004 * 109.46950 * 119.99947 * 2 1 3 13 13 N 1.46493 * 109.47106 * 299.99858 * 12 2 1 14 14 C 1.34777 * 120.00059 * 180.02562 * 13 12 2 15 15 O 1.21595 * 120.00038 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00242 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99957 * 179.97438 * 16 14 13 18 18 C 1.53950 * 113.57943 * 105.75424 * 17 16 14 19 19 C 1.53064 * 86.72866 * 89.97536 * 18 17 16 20 20 C 1.52907 * 121.17777 * 150.58516 * 19 18 17 21 21 C 1.53958 * 86.78205 * 100.75092 * 20 19 18 22 22 C 1.52915 * 121.06536 * 259.12116 * 19 18 17 23 23 C 1.52909 * 88.07110 * 24.83053 * 19 18 17 24 24 H 1.08995 * 109.47144 * 299.99794 * 1 2 3 25 25 H 1.09001 * 109.47006 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47342 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46741 * 300.00360 * 3 2 1 29 29 H 1.09004 * 109.46884 * 59.99417 * 3 2 1 30 30 H 0.96998 * 120.00270 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46863 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.46800 * 60.00230 * 12 2 1 33 33 H 0.97005 * 120.00271 * 0.02562 * 13 12 2 34 34 H 0.97001 * 119.99968 * 359.97438 * 16 14 13 35 35 H 1.09002 * 112.82315 * 334.66118 * 17 16 14 36 36 H 1.09006 * 113.66206 * 204.42289 * 18 17 16 37 37 H 1.09001 * 113.66131 * 335.46726 * 18 17 16 38 38 H 1.08994 * 113.66316 * 215.21977 * 20 19 18 39 39 H 1.08997 * 113.66044 * 346.28226 * 20 19 18 40 40 H 1.09000 * 113.57861 * 270.13288 * 21 20 19 41 41 H 1.08990 * 113.65166 * 139.34938 * 21 20 19 42 42 H 1.09004 * 113.66330 * 13.63126 * 22 19 18 43 43 H 1.09001 * 113.65876 * 144.67975 * 22 19 18 44 44 H 1.09000 * 113.66588 * 220.69917 * 23 19 18 45 45 H 1.09002 * 113.66049 * 89.63812 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8260 -0.4205 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7811 16 7 1.4280 0.1443 4.7700 17 6 1.7819 -0.3563 6.1005 18 6 2.8382 0.5017 6.8204 19 6 1.6679 1.3041 7.3944 20 6 1.7727 1.9937 8.7551 21 6 2.0235 3.2985 7.9774 22 6 1.2702 2.6553 6.7990 23 6 0.7915 0.0661 7.2009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7096 1.1619 -3.4844 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7579 2.3564 34 1 0.8701 0.9327 4.6810 35 1 2.0095 -1.4223 6.1045 36 1 3.4057 -0.0443 7.5741 37 1 3.4721 1.0743 6.1434 38 1 0.8399 1.9930 9.3189 39 1 2.6274 1.6660 9.3469 40 1 3.0769 3.4872 7.7705 41 1 1.5140 4.1643 8.4001 42 1 1.7234 2.8560 5.8281 43 1 0.1961 2.8403 6.8130 44 1 -0.2075 0.2913 6.8274 45 1 0.7827 -0.6025 8.0617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593414148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:26 Heat of formation + Delta-G solvation = 0.366128 kcal Electronic energy + Delta-G solvation = -22462.546144 eV Core-core repulsion = 19288.039384 eV Total energy + Delta-G solvation = -3174.506760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89324 -39.15666 -36.50502 -35.35642 -33.27584 -32.14035 -30.53317 -26.00309 -25.99762 -25.69860 -25.60213 -24.99177 -23.94595 -21.17904 -20.29443 -18.76218 -18.17556 -18.08497 -16.00351 -15.79554 -15.69937 -15.40319 -14.85786 -14.76236 -14.41434 -13.81628 -13.37236 -13.11893 -12.85299 -12.82987 -12.66013 -12.25945 -12.15094 -12.04632 -11.38781 -11.37146 -11.19611 -11.16807 -10.82319 -10.70935 -10.42252 -10.35900 -10.30322 -10.18836 -9.92428 -9.72969 -9.60175 -9.27956 -8.88743 -8.77328 -8.38889 -8.15655 -6.00000 -4.09916 3.10281 3.31826 3.35831 3.40114 3.65168 4.20376 4.26270 4.38524 4.41301 4.59377 4.62172 4.74810 4.84109 5.23427 5.26692 5.42493 5.47504 5.51522 5.56081 5.63818 5.68284 5.76199 5.79626 5.91559 6.00200 6.16073 6.24024 6.28371 6.39930 6.53793 6.80727 6.83396 6.85416 6.94718 7.06030 7.13516 7.35186 7.46344 7.58510 7.71933 8.03676 8.15009 8.40879 8.53323 8.89909 9.09644 9.55706 11.01416 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.003263 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.789127 B = 8579.028995 C = 8921.436665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.699 3.301 15 O -0.599 6.599 16 N -0.734 5.734 17 C 0.147 3.853 18 C -0.130 4.130 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.136 4.136 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 4.853 19.678 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.399 3.601 15 O -0.478 6.478 16 N -0.389 5.389 17 C 0.040 3.960 18 C -0.169 4.169 19 C -0.105 4.105 20 C -0.165 4.165 21 C -0.176 4.176 22 C -0.159 4.159 23 C -0.174 4.174 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.067 4.032 19.569 20.009 hybrid contribution -0.195 0.350 -0.901 0.986 sum -1.262 4.382 18.669 19.218 Atomic orbital electron populations 1.21817 0.97801 0.99141 0.99962 1.18354 0.92773 0.92757 0.90547 1.21815 0.98552 0.98373 0.99956 1.20964 1.31475 1.12114 0.89908 0.92453 1.24876 0.94867 0.94928 0.98822 1.69795 1.36714 1.22750 1.23287 0.86632 0.79245 0.79800 0.82167 1.20279 1.21357 1.20272 1.21576 0.97846 0.95406 0.82409 1.45505 1.55596 1.33038 1.04605 1.16075 0.80451 0.82931 0.80677 1.90876 1.43104 1.27795 1.86054 1.44806 1.56946 1.32982 1.04196 1.21518 0.94924 0.98805 0.80757 1.23225 0.96079 0.98075 0.99546 1.22538 0.97887 0.93241 0.96857 1.22743 1.01687 0.96307 0.95793 1.22786 1.00691 0.96935 0.97206 1.22696 1.00437 0.94307 0.98412 1.23201 0.98216 0.97342 0.98648 0.97574 0.89672 0.95467 0.95483 0.89674 0.97586 0.92985 0.93002 0.92986 0.77261 0.77351 0.88236 0.89196 0.90904 0.90146 0.91527 0.90309 0.91664 0.91149 0.89849 0.90883 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.39 8.01 -34.44 -0.28 -13.67 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 8 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 13 N -0.73 -13.42 4.96 -65.23 -0.32 -13.75 16 14 C 0.70 12.70 8.57 -86.92 -0.74 11.95 16 15 O -0.60 -13.27 15.96 5.28 0.08 -13.18 16 16 N -0.73 -9.87 5.26 -57.71 -0.30 -10.17 16 17 C 0.15 1.74 4.29 -66.95 -0.29 1.45 16 18 C -0.13 -1.35 7.65 -26.20 -0.20 -1.55 16 19 C -0.11 -0.90 1.03 -154.63 -0.16 -1.06 16 20 C -0.13 -0.96 7.84 -26.28 -0.21 -1.16 16 21 C -0.14 -1.06 8.08 -25.75 -0.21 -1.27 16 22 C -0.12 -1.00 7.21 -26.28 -0.19 -1.19 16 23 C -0.14 -1.20 7.58 -26.28 -0.20 -1.40 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.39 6.45 6.18 -40.82 -0.25 6.20 16 34 H 0.39 4.39 8.11 -40.82 -0.33 4.06 16 35 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -29.01 350.65 -9.59 -38.60 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.77 Total: 7.59 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.06 Total: -7.00 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.11 Total: -47.14 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.01 -9.59 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593414148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.971 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds