Wall clock time and date at job start Tue Mar 31 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47240 * 239.99968 * 2 1 3 5 5 H 1.08002 * 120.00413 * 239.99749 * 4 2 1 6 6 C 1.37879 * 119.99812 * 60.00061 * 4 2 1 7 7 N 1.31514 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99766 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47362 * 60.00013 * 8 6 4 10 10 H 1.48501 * 109.46786 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47091 * 299.99611 * 8 6 4 12 12 C 1.53004 * 109.46950 * 119.99947 * 2 1 3 13 13 N 1.46493 * 109.47106 * 299.99858 * 12 2 1 14 14 C 1.34777 * 120.00059 * 180.02562 * 13 12 2 15 15 O 1.21595 * 120.00038 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00242 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99957 * 179.97438 * 16 14 13 18 18 C 1.53950 * 113.57943 * 105.75424 * 17 16 14 19 19 C 1.53064 * 86.72866 * 89.97536 * 18 17 16 20 20 C 1.52907 * 121.17777 * 150.58516 * 19 18 17 21 21 C 1.53958 * 86.78205 * 100.75092 * 20 19 18 22 22 C 1.52915 * 121.06536 * 259.12116 * 19 18 17 23 23 C 1.52909 * 88.07110 * 24.83053 * 19 18 17 24 24 H 1.08995 * 109.47144 * 299.99794 * 1 2 3 25 25 H 1.09001 * 109.47006 * 60.00068 * 1 2 3 26 26 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47342 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46741 * 300.00360 * 3 2 1 29 29 H 1.09004 * 109.46884 * 59.99417 * 3 2 1 30 30 H 0.96998 * 120.00270 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46863 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.46800 * 60.00230 * 12 2 1 33 33 H 0.97005 * 120.00271 * 0.02562 * 13 12 2 34 34 H 0.97001 * 119.99968 * 359.97438 * 16 14 13 35 35 H 1.09002 * 112.82315 * 334.66118 * 17 16 14 36 36 H 1.09006 * 113.66206 * 204.42289 * 18 17 16 37 37 H 1.09001 * 113.66131 * 335.46726 * 18 17 16 38 38 H 1.08994 * 113.66316 * 215.21977 * 20 19 18 39 39 H 1.08997 * 113.66044 * 346.28226 * 20 19 18 40 40 H 1.09000 * 113.57861 * 270.13288 * 21 20 19 41 41 H 1.08990 * 113.65166 * 139.34938 * 21 20 19 42 42 H 1.09004 * 113.66330 * 13.63126 * 22 19 18 43 43 H 1.09001 * 113.65876 * 144.67975 * 22 19 18 44 44 H 1.09000 * 113.66588 * 220.69917 * 23 19 18 45 45 H 1.09002 * 113.66049 * 89.63812 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8260 -0.4205 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7811 16 7 1.4280 0.1443 4.7700 17 6 1.7819 -0.3563 6.1005 18 6 2.8382 0.5017 6.8204 19 6 1.6679 1.3041 7.3944 20 6 1.7727 1.9937 8.7551 21 6 2.0235 3.2985 7.9774 22 6 1.2702 2.6553 6.7990 23 6 0.7915 0.0661 7.2009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7096 1.1619 -3.4844 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.9937 0.7579 2.3564 34 1 0.8701 0.9327 4.6810 35 1 2.0095 -1.4223 6.1045 36 1 3.4057 -0.0443 7.5741 37 1 3.4721 1.0743 6.1434 38 1 0.8399 1.9930 9.3189 39 1 2.6274 1.6660 9.3469 40 1 3.0769 3.4872 7.7705 41 1 1.5140 4.1643 8.4001 42 1 1.7234 2.8560 5.8281 43 1 0.1961 2.8403 6.8130 44 1 -0.2075 0.2913 6.8274 45 1 0.7827 -0.6025 8.0617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593414148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:26 Heat of formation + Delta-G solvation = -16.129613 kcal Electronic energy + Delta-G solvation = -22463.261453 eV Core-core repulsion = 19288.039384 eV Total energy + Delta-G solvation = -3175.222069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79480 -40.49919 -38.20402 -36.36217 -35.00312 -33.50024 -32.22884 -27.55542 -27.47108 -26.83211 -26.77457 -26.47322 -24.89751 -22.40674 -21.36605 -20.56626 -19.58515 -18.87804 -17.77122 -17.14875 -16.69739 -16.55294 -16.15824 -16.10815 -15.75330 -15.24830 -14.74583 -14.66061 -14.45455 -13.98242 -13.67362 -13.43445 -13.23858 -13.08472 -13.03957 -12.81579 -12.65743 -12.61704 -12.24312 -12.12991 -12.06704 -11.93795 -11.47601 -11.38501 -11.15823 -11.03492 -10.98975 -10.70787 -10.67598 -10.39470 -10.20883 -9.62999 -8.01645 -6.17378 1.44889 1.45676 1.52404 1.80134 2.19876 2.46919 3.21902 3.38497 3.50619 3.57412 3.69321 3.92254 3.94217 4.02479 4.42550 4.54191 4.60007 4.63609 4.71873 4.79275 4.84055 4.90739 4.94955 4.96479 5.02113 5.06430 5.06808 5.09703 5.12456 5.14764 5.20928 5.23882 5.39239 5.52570 5.60630 5.63453 5.67722 5.68055 5.75995 6.10574 6.15948 6.22742 6.44491 6.86689 7.17843 7.50265 7.65759 8.97196 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.003263 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.789127 B = 8579.028995 C = 8921.436665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.642 6.642 16 N -0.714 5.714 17 C 0.129 3.871 18 C -0.129 4.129 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.405 0.595 34 H 0.407 0.593 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 5.846 21.348 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.524 6.524 16 N -0.369 5.369 17 C 0.023 3.977 18 C -0.168 4.168 19 C -0.101 4.101 20 C -0.158 4.158 21 C -0.177 4.177 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.241 0.759 34 H 0.243 0.757 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.046 5.071 21.277 21.969 hybrid contribution 0.119 0.041 -1.369 1.375 sum -1.927 5.113 19.907 20.644 Atomic orbital electron populations 1.21656 0.97058 0.98628 1.00348 1.18346 0.93288 0.93012 0.90138 1.21652 0.97825 0.97846 1.00324 1.21263 1.31840 1.12261 0.91628 0.93744 1.25444 0.95111 0.95591 1.00926 1.69896 1.36950 1.23239 1.23681 0.85822 0.78630 0.78830 0.79555 1.20261 1.20738 1.20271 1.21114 0.96593 0.94661 0.83265 1.45197 1.55821 1.33213 1.03898 1.16208 0.80123 0.82620 0.81342 1.90850 1.45048 1.29842 1.86677 1.44631 1.55974 1.32701 1.03599 1.21772 0.97512 0.97856 0.80591 1.23214 0.96205 0.98040 0.99370 1.22469 0.96444 0.93251 0.97937 1.22742 1.02490 0.95500 0.95090 1.22789 1.00375 0.97535 0.96994 1.22765 1.01233 0.94061 0.98074 1.23162 0.97776 0.97311 0.97495 0.94477 0.91858 0.96378 0.96458 0.91859 0.94521 0.92995 0.94813 0.94712 0.75873 0.75650 0.90524 0.88184 0.92690 0.88810 0.91265 0.90975 0.90655 0.92278 0.88561 0.90049 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.49 8.01 25.60 0.21 -28.29 16 5 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.54 5.15 84.66 0.44 1.98 16 7 N -0.90 -48.12 9.35 21.45 0.20 -47.92 16 8 Si 0.94 42.89 29.54 68.60 2.03 44.92 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.41 4.50 86.38 0.39 7.79 16 13 N -0.73 -25.99 4.96 -478.53 -2.37 -28.37 16 14 C 0.70 25.06 8.57 179.05 1.53 26.59 16 15 O -0.64 -28.88 15.96 -4.02 -0.06 -28.94 16 16 N -0.71 -18.31 5.26 -454.75 -2.39 -20.70 16 17 C 0.13 2.91 4.29 45.63 0.20 3.11 16 18 C -0.13 -2.53 7.65 30.94 0.24 -2.29 16 19 C -0.10 -1.48 1.03 -52.26 -0.05 -1.54 16 20 C -0.12 -1.44 7.84 30.89 0.24 -1.20 16 21 C -0.14 -1.79 8.08 31.23 0.25 -1.54 16 22 C -0.12 -1.74 7.21 30.89 0.22 -1.51 16 23 C -0.12 -1.79 7.58 30.89 0.23 -1.55 16 24 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 25 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 29 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 30 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.40 12.44 6.18 -92.70 -0.57 11.87 16 34 H 0.41 8.21 8.11 -92.71 -0.75 7.46 16 35 H 0.08 2.11 7.50 -2.39 -0.02 2.09 16 36 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.96 8.13 -2.38 -0.02 0.94 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -62.80 350.65 2.08 -60.72 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.35 Total: 25.77 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.03 Total: -5.48 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -4.57 Total: -96.99 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.06 Total: -28.94 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -62.80 2.08 -60.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593414148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.592 kcal (2) G-P(sol) polarization free energy of solvation -62.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds