Wall clock time and date at job start Tue Mar 31 2020 01:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00218 * 2 1 4 4 C 1.52996 * 109.47404 * 124.99582 * 3 2 1 5 5 H 1.08998 * 109.49770 * 305.06666 * 4 3 2 6 6 C 1.53041 * 109.49928 * 184.99985 * 4 3 2 7 7 C 1.53037 * 109.53731 * 178.65242 * 6 4 3 8 8 C 1.53189 * 109.31573 * 61.36447 * 7 6 4 9 9 N 1.46928 * 108.77737 * 305.36599 * 8 7 6 10 10 C 1.34772 * 120.62909 * 233.58604 * 9 8 7 11 11 O 1.21592 * 119.99737 * 185.02176 * 10 9 8 12 12 N 1.34778 * 120.00172 * 4.74646 * 10 9 8 13 13 C 1.46500 * 119.99704 * 175.20527 * 12 10 9 14 14 C 1.53004 * 109.46947 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47455 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47248 * 180.02562 * 15 14 13 17 17 H 1.07992 * 119.99990 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99523 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00706 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99640 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47075 * 59.99266 * 20 18 16 22 22 H 1.48495 * 109.46995 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46673 * 299.99807 * 20 18 16 24 24 C 1.46925 * 118.73551 * 53.85727 * 9 8 7 25 25 H 1.08005 * 120.00135 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99886 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99886 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46538 * 4.99574 * 3 2 1 29 29 H 1.09001 * 109.47058 * 244.99599 * 3 2 1 30 30 H 1.09000 * 109.45931 * 58.62894 * 6 4 3 31 31 H 1.08999 * 109.44681 * 298.66678 * 6 4 3 32 32 H 1.09002 * 109.49618 * 301.41161 * 7 6 4 33 33 H 1.09001 * 109.49421 * 181.31537 * 7 6 4 34 34 H 1.08996 * 109.58877 * 185.57396 * 8 7 6 35 35 H 1.09007 * 109.70049 * 65.21943 * 8 7 6 36 36 H 0.96998 * 120.00023 * 355.20165 * 12 10 9 37 37 H 1.09003 * 109.47069 * 299.99852 * 13 12 10 38 38 H 1.08994 * 109.47458 * 59.99642 * 13 12 10 39 39 H 1.09004 * 109.46582 * 300.00079 * 14 13 12 40 40 H 1.09002 * 109.46838 * 59.99522 * 14 13 12 41 41 H 1.09003 * 109.46911 * 299.99944 * 15 14 13 42 42 H 1.09001 * 109.46928 * 59.99720 * 15 14 13 43 43 H 0.96999 * 120.00244 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58873 * 65.93199 * 24 9 8 45 45 H 1.09007 * 109.58544 * 186.35961 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4888 1.1459 2.1061 6 6 3.7097 2.7048 1.2558 7 6 4.6566 2.7451 2.4574 8 6 5.7439 1.6803 2.2817 9 7 5.0996 0.3778 2.0645 10 6 5.4162 -0.6818 2.8349 11 8 4.9452 -1.7752 2.5880 12 7 6.2591 -0.5305 3.8756 13 6 6.5214 -1.6564 4.7754 14 6 7.5049 -1.2211 5.8637 15 6 7.7784 -2.3968 6.8038 16 6 8.7466 -1.9678 7.8761 17 1 9.1283 -0.9577 7.8862 18 6 9.1450 -2.8651 8.8440 19 7 8.6798 -4.0952 8.8320 20 14 10.3446 -2.3333 10.1736 21 1 9.7601 -1.2078 10.9462 22 1 10.6101 -3.4744 11.0860 23 1 11.6168 -1.8945 9.5456 24 6 4.1080 0.2509 0.9878 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 2.9494 3.4779 1.3664 31 1 4.2759 2.8806 0.3412 32 1 4.0951 2.5445 3.3699 33 1 5.1191 3.7299 2.5232 34 1 6.3617 1.6374 3.1786 35 1 6.3655 1.9284 1.4213 36 1 6.6921 0.3239 4.0287 37 1 5.5878 -1.9775 5.2373 38 1 6.9491 -2.4829 4.2081 39 1 8.4386 -0.8997 5.4020 40 1 7.0767 -0.3947 6.4309 41 1 6.8445 -2.7177 7.2654 42 1 8.2064 -3.2235 6.2368 43 1 8.9599 -4.7263 9.5133 44 1 4.5970 0.3859 0.0230 45 1 3.6461 -0.7355 1.0308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595489210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:13 Heat of formation + Delta-G solvation = -35.030353 kcal Electronic energy + Delta-G solvation = -21712.545800 eV Core-core repulsion = 18536.504134 eV Total energy + Delta-G solvation = -3176.041667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42320 -38.16511 -35.47076 -35.37799 -33.36446 -32.75458 -31.45844 -30.86955 -27.10523 -26.40870 -25.21288 -22.89556 -22.79006 -20.77359 -20.55659 -19.84928 -19.36389 -18.01607 -16.50846 -16.11046 -15.64821 -15.53344 -14.89437 -14.70716 -14.51879 -14.30229 -14.20269 -13.86322 -13.50774 -13.21987 -13.06527 -12.81139 -12.27690 -11.82224 -11.79033 -11.67308 -11.59377 -11.47017 -11.12317 -11.01893 -10.87292 -10.66660 -10.60646 -10.53899 -9.99644 -9.83860 -9.55788 -9.41650 -9.12136 -8.90383 -8.43091 -8.35675 -6.00350 -4.03566 2.04415 2.73229 3.32670 3.36273 3.37428 3.39287 3.99843 4.34578 4.45279 4.49630 4.52955 4.69747 4.85665 4.92194 5.01077 5.13504 5.23229 5.33216 5.35205 5.40522 5.47709 5.54829 5.59897 5.64771 5.68431 5.76685 5.80985 5.84223 5.91604 6.09773 6.21077 6.38199 6.43860 6.53519 6.57969 6.64683 6.83963 7.04666 7.06893 7.65200 7.78558 7.98543 8.10950 8.39457 8.77165 9.02956 9.60415 11.10932 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.002695 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.540706 B =10387.724195 C =10933.726430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.099 4.099 5 H 0.076 0.924 6 C -0.113 4.113 7 C -0.136 4.136 8 C 0.111 3.889 9 N -0.634 5.634 10 C 0.704 3.296 11 O -0.592 6.592 12 N -0.742 5.742 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.135 3.865 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.062 0.938 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 15.768 -18.535 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C -0.123 4.123 4 C -0.119 4.119 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.372 5.372 10 C 0.405 3.595 11 O -0.470 6.470 12 N -0.399 5.399 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.012 3.988 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.130 14.753 -18.575 26.643 hybrid contribution 0.881 0.661 0.920 1.435 sum -11.249 15.414 -17.655 25.997 Atomic orbital electron populations 1.23838 0.95982 1.01724 1.01836 1.23040 0.96106 0.98767 0.99233 1.20762 0.97741 0.95557 0.98280 1.21616 0.95780 0.95368 0.99123 0.90516 1.21564 0.98568 0.96570 0.98373 1.21922 0.97497 0.98781 0.99193 1.21616 0.94936 0.83063 1.01678 1.47265 1.44719 1.09272 1.35960 1.15923 0.79977 0.83829 0.79734 1.90900 1.58788 1.24232 1.73097 1.45567 1.48564 1.16294 1.29461 1.21512 0.99689 0.87512 0.90215 1.21886 0.96691 1.01453 0.95758 1.19021 0.97030 0.92127 0.93144 1.21166 1.26483 0.97433 1.11021 0.92720 1.25028 0.96523 0.94954 0.97954 1.69953 1.44193 1.04200 1.34936 0.86643 0.81539 0.78045 0.81664 1.20261 1.21274 1.20251 1.21590 0.88318 1.00281 0.88629 0.88553 0.88797 0.87025 0.91236 0.90783 0.91672 0.91681 0.91274 0.90628 0.90303 0.91407 0.77162 0.92078 0.91898 0.92811 0.92845 0.96259 0.96231 0.92865 0.91998 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.11 16 2 C -0.15 -1.26 9.03 -36.03 -0.33 -1.59 16 3 C -0.09 -0.60 5.13 -27.89 -0.14 -0.74 16 4 C -0.10 -0.82 2.34 -90.27 -0.21 -1.03 16 5 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.11 -0.75 5.16 -26.69 -0.14 -0.89 16 7 C -0.14 -0.97 6.08 -26.61 -0.16 -1.14 16 8 C 0.11 0.96 6.43 -3.71 -0.02 0.94 16 9 N -0.63 -7.67 2.97 -178.23 -0.53 -8.20 16 10 C 0.70 11.48 8.30 -86.92 -0.72 10.76 16 11 O -0.59 -12.05 15.78 5.28 0.08 -11.97 16 12 N -0.74 -11.46 5.47 -65.22 -0.36 -11.81 16 13 C 0.13 2.47 5.68 -4.04 -0.02 2.45 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 C 0.14 1.42 5.44 -3.48 -0.02 1.40 16 25 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 26 H 0.09 0.63 7.84 -52.49 -0.41 0.22 16 27 H 0.11 0.99 7.11 -52.49 -0.37 0.62 16 28 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.65 5.57 -51.93 -0.29 0.36 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.39 4.95 5.93 -40.82 -0.24 4.71 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.19 5.90 -51.93 -0.31 0.89 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -32.91 359.31 -9.62 -42.53 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.91 Total: 0.23 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.04 Total: -6.46 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.15 Total: -46.28 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.91 -9.62 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.499 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds