Wall clock time and date at job start Tue Mar 31 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00218 * 2 1 4 4 C 1.52996 * 109.47404 * 124.99582 * 3 2 1 5 5 H 1.08998 * 109.49770 * 305.06666 * 4 3 2 6 6 C 1.53041 * 109.49928 * 184.99985 * 4 3 2 7 7 C 1.53037 * 109.53731 * 178.65242 * 6 4 3 8 8 C 1.53189 * 109.31573 * 61.36447 * 7 6 4 9 9 N 1.46928 * 108.77737 * 305.36599 * 8 7 6 10 10 C 1.34772 * 120.62909 * 233.58604 * 9 8 7 11 11 O 1.21592 * 119.99737 * 185.02176 * 10 9 8 12 12 N 1.34778 * 120.00172 * 4.74646 * 10 9 8 13 13 C 1.46500 * 119.99704 * 175.20527 * 12 10 9 14 14 C 1.53004 * 109.46947 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47455 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47248 * 180.02562 * 15 14 13 17 17 H 1.07992 * 119.99990 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99523 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00706 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99640 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47075 * 59.99266 * 20 18 16 22 22 H 1.48495 * 109.46995 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46673 * 299.99807 * 20 18 16 24 24 C 1.46925 * 118.73551 * 53.85727 * 9 8 7 25 25 H 1.08005 * 120.00135 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.99886 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99886 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46538 * 4.99574 * 3 2 1 29 29 H 1.09001 * 109.47058 * 244.99599 * 3 2 1 30 30 H 1.09000 * 109.45931 * 58.62894 * 6 4 3 31 31 H 1.08999 * 109.44681 * 298.66678 * 6 4 3 32 32 H 1.09002 * 109.49618 * 301.41161 * 7 6 4 33 33 H 1.09001 * 109.49421 * 181.31537 * 7 6 4 34 34 H 1.08996 * 109.58877 * 185.57396 * 8 7 6 35 35 H 1.09007 * 109.70049 * 65.21943 * 8 7 6 36 36 H 0.96998 * 120.00023 * 355.20165 * 12 10 9 37 37 H 1.09003 * 109.47069 * 299.99852 * 13 12 10 38 38 H 1.08994 * 109.47458 * 59.99642 * 13 12 10 39 39 H 1.09004 * 109.46582 * 300.00079 * 14 13 12 40 40 H 1.09002 * 109.46838 * 59.99522 * 14 13 12 41 41 H 1.09003 * 109.46911 * 299.99944 * 15 14 13 42 42 H 1.09001 * 109.46928 * 59.99720 * 15 14 13 43 43 H 0.96999 * 120.00244 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58873 * 65.93199 * 24 9 8 45 45 H 1.09007 * 109.58544 * 186.35961 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4888 1.1459 2.1061 6 6 3.7097 2.7048 1.2558 7 6 4.6566 2.7451 2.4574 8 6 5.7439 1.6803 2.2817 9 7 5.0996 0.3778 2.0645 10 6 5.4162 -0.6818 2.8349 11 8 4.9452 -1.7752 2.5880 12 7 6.2591 -0.5305 3.8756 13 6 6.5214 -1.6564 4.7754 14 6 7.5049 -1.2211 5.8637 15 6 7.7784 -2.3968 6.8038 16 6 8.7466 -1.9678 7.8761 17 1 9.1283 -0.9577 7.8862 18 6 9.1450 -2.8651 8.8440 19 7 8.6798 -4.0952 8.8320 20 14 10.3446 -2.3333 10.1736 21 1 9.7601 -1.2078 10.9462 22 1 10.6101 -3.4744 11.0860 23 1 11.6168 -1.8945 9.5456 24 6 4.1080 0.2509 0.9878 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 2.9494 3.4779 1.3664 31 1 4.2759 2.8806 0.3412 32 1 4.0951 2.5445 3.3699 33 1 5.1191 3.7299 2.5232 34 1 6.3617 1.6374 3.1786 35 1 6.3655 1.9284 1.4213 36 1 6.6921 0.3239 4.0287 37 1 5.5878 -1.9775 5.2373 38 1 6.9491 -2.4829 4.2081 39 1 8.4386 -0.8997 5.4020 40 1 7.0767 -0.3947 6.4309 41 1 6.8445 -2.7177 7.2654 42 1 8.2064 -3.2235 6.2368 43 1 8.9599 -4.7263 9.5133 44 1 4.5970 0.3859 0.0230 45 1 3.6461 -0.7355 1.0308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595489210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:12 Heat of formation + Delta-G solvation = -54.554163 kcal Electronic energy + Delta-G solvation = -21713.392416 eV Core-core repulsion = 18536.504134 eV Total energy + Delta-G solvation = -3176.888283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51213 -39.11174 -36.97862 -36.24832 -35.18436 -33.75903 -32.80576 -31.95071 -28.74915 -27.17017 -26.36927 -24.63592 -23.47957 -22.31521 -21.63160 -20.54018 -20.35885 -19.15018 -18.46319 -17.37308 -16.88960 -16.52981 -16.30336 -15.87431 -15.62885 -15.41213 -15.26593 -14.79211 -14.43395 -14.24961 -14.10281 -13.83243 -13.70541 -13.50549 -13.41074 -12.71222 -12.60783 -12.43773 -12.39947 -12.20515 -12.09214 -11.77392 -11.74409 -11.67586 -11.53741 -11.27748 -11.19051 -11.08842 -10.54624 -10.24666 -10.17013 -9.47002 -8.18913 -6.30808 1.40950 1.41918 1.45307 1.53050 1.62947 2.08965 2.42307 2.93814 3.14655 3.69820 3.86148 3.88519 4.07316 4.14489 4.21275 4.22730 4.28535 4.35385 4.43532 4.54178 4.60192 4.74587 4.80954 4.83978 4.89382 4.93726 4.94924 5.03371 5.06207 5.13268 5.16307 5.21334 5.29780 5.45548 5.49070 5.52731 5.58430 5.70363 5.78218 5.83952 5.90876 5.92644 6.22424 6.85977 6.95309 7.38755 7.52231 8.93164 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.002695 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.540706 B =10387.724195 C =10933.726430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C -0.079 4.079 4 C -0.091 4.091 5 H 0.054 0.946 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.102 3.898 9 N -0.627 5.627 10 C 0.696 3.304 11 O -0.641 6.641 12 N -0.732 5.732 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.131 3.869 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.409 0.591 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.068 0.932 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.080 0.920 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 19.273 -19.085 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.187 4.187 3 C -0.116 4.116 4 C -0.110 4.110 5 H 0.072 0.928 6 C -0.147 4.147 7 C -0.170 4.170 8 C -0.020 4.020 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.523 6.523 12 N -0.390 5.390 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.189 1.189 24 C 0.008 3.992 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.248 0.752 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.419 18.342 -19.153 28.873 hybrid contribution 0.606 -0.448 1.031 1.277 sum -10.813 17.893 -18.122 27.667 Atomic orbital electron populations 1.23993 0.95923 1.02427 1.01115 1.23134 0.96508 0.99084 0.99976 1.20741 0.97629 0.95062 0.98183 1.21520 0.95110 0.95699 0.98679 0.92790 1.21572 0.98875 0.95389 0.98832 1.21917 0.96997 0.99305 0.98756 1.21955 0.95676 0.81482 1.02866 1.47365 1.44449 1.09464 1.35062 1.16142 0.79773 0.84192 0.80117 1.90865 1.60491 1.26590 1.74400 1.45225 1.48759 1.16114 1.28868 1.21081 0.98359 0.88083 0.90050 1.21581 0.97778 0.99275 0.95051 1.18933 0.95215 0.93523 0.93673 1.21646 1.26696 0.98072 1.11514 0.91416 1.26047 0.98545 0.94881 1.00715 1.70109 1.45847 1.05609 1.36063 0.85450 0.79167 0.77793 0.78322 1.18953 1.21212 1.18946 1.21737 0.88759 0.99848 0.88874 0.88676 0.87354 0.88610 0.89777 0.89425 0.90221 0.90068 0.92801 0.88047 0.89919 0.89223 0.75210 0.93725 0.93648 0.91331 0.91343 0.99009 0.99009 0.92801 0.90159 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.96 14.32 67.78 0.97 -1.99 16 2 C -0.17 -2.76 9.03 25.65 0.23 -2.53 16 3 C -0.08 -0.96 5.13 29.85 0.15 -0.80 16 4 C -0.09 -1.37 2.34 -10.57 -0.02 -1.39 16 5 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.11 -1.09 5.16 30.62 0.16 -0.94 16 7 C -0.13 -1.48 6.08 30.67 0.19 -1.29 16 8 C 0.10 1.50 6.43 86.36 0.56 2.05 16 9 N -0.63 -14.63 2.97 -836.05 -2.48 -17.11 16 10 C 0.70 22.98 8.30 179.06 1.49 24.46 16 11 O -0.64 -27.34 15.78 -4.01 -0.06 -27.41 16 12 N -0.73 -22.33 5.47 -478.53 -2.62 -24.95 16 13 C 0.15 5.62 5.68 86.38 0.49 6.11 16 14 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 15 C 0.02 1.29 4.97 29.85 0.15 1.43 16 16 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 19 N -0.94 -57.79 13.29 21.44 0.28 -57.51 16 20 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C 0.13 2.68 5.44 86.51 0.47 3.15 16 25 H 0.09 1.40 8.06 -2.91 -0.02 1.37 16 26 H 0.11 1.28 7.84 -2.91 -0.02 1.26 16 27 H 0.10 1.84 7.11 -2.91 -0.02 1.82 16 28 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.14 5.57 -2.39 -0.01 1.13 16 35 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 36 H 0.41 9.62 5.93 -92.71 -0.55 9.07 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.73 5.90 -2.38 -0.01 1.71 16 Total: -1.00 -73.60 359.31 3.23 -70.38 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.39 Total: 16.09 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.68 Total: -5.45 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.81 Total: -99.56 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.60 3.23 -70.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.824 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds