Wall clock time and date at job start Tue Mar 31 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00120 * 2 1 4 4 C 1.53004 * 109.47191 * 124.99908 * 3 2 1 5 5 H 1.09003 * 109.49587 * 55.06234 * 4 3 2 6 6 C 1.53038 * 109.49900 * 175.16478 * 4 3 2 7 7 C 1.53040 * 109.53713 * 181.31632 * 6 4 3 8 8 C 1.53189 * 109.31463 * 298.63265 * 7 6 4 9 9 N 1.46930 * 108.77329 * 54.63597 * 8 7 6 10 10 C 1.34775 * 120.63025 * 126.41984 * 9 8 7 11 11 O 1.21584 * 120.00118 * 174.94315 * 10 9 8 12 12 N 1.34781 * 120.00102 * 354.93131 * 10 9 8 13 13 C 1.46496 * 120.00147 * 185.07858 * 12 10 9 14 14 C 1.53004 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46908 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.46894 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99768 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99782 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99953 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46776 * 90.00316 * 20 18 16 22 22 H 1.48501 * 109.46886 * 209.99782 * 20 18 16 23 23 H 1.48495 * 109.47089 * 329.99952 * 20 18 16 24 24 C 1.46923 * 118.73648 * 306.39026 * 9 8 7 25 25 H 1.07996 * 120.00010 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99702 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99702 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47543 * 244.99713 * 3 2 1 29 29 H 1.09001 * 109.47362 * 5.00269 * 3 2 1 30 30 H 1.08996 * 109.46041 * 301.33449 * 6 4 3 31 31 H 1.08994 * 109.46089 * 61.29470 * 6 4 3 32 32 H 1.08996 * 109.49780 * 178.67719 * 7 6 4 33 33 H 1.09005 * 109.52452 * 58.60049 * 7 6 4 34 34 H 1.09000 * 109.58645 * 294.85118 * 8 7 6 35 35 H 1.08999 * 109.70789 * 174.49385 * 8 7 6 36 36 H 0.97006 * 119.99716 * 5.07407 * 12 10 9 37 37 H 1.08996 * 109.46956 * 300.00120 * 13 12 10 38 38 H 1.08994 * 109.47049 * 60.00251 * 13 12 10 39 39 H 1.09005 * 109.46796 * 299.99848 * 14 13 12 40 40 H 1.08998 * 109.46878 * 59.99344 * 14 13 12 41 41 H 1.09005 * 109.47161 * 299.99494 * 15 14 13 42 42 H 1.08994 * 109.47278 * 59.99947 * 15 14 13 43 43 H 0.97004 * 120.00237 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58939 * 293.81913 * 24 9 8 45 45 H 1.09005 * 109.58340 * 173.39676 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 1 3.6837 0.4580 1.1402 6 6 3.8854 2.6037 1.1139 7 6 4.8799 2.6166 2.2770 8 6 4.1104 2.6199 3.6016 9 7 3.1835 1.4799 3.6129 10 6 3.1939 0.5964 4.6306 11 8 2.3622 -0.2893 4.6753 12 7 4.1265 0.6946 5.5988 13 6 4.2080 -0.3287 6.6438 14 6 5.3421 0.0185 7.6104 15 6 5.4276 -1.0507 8.7014 16 6 6.5443 -0.7083 9.6538 17 1 7.1342 0.1826 9.4963 18 6 6.8127 -1.5323 10.7262 19 7 7.7875 -1.2338 11.5569 20 14 5.7918 -3.0727 10.9989 21 1 6.4171 -4.2140 10.2836 22 1 5.7286 -3.3738 12.4517 23 1 4.4183 -2.8548 10.4784 24 6 2.2446 1.3218 2.4939 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6214 1.4026 -0.9313 29 1 1.3587 2.1316 0.0896 30 1 4.4301 2.6262 0.1701 31 1 3.2378 3.4779 1.1801 32 1 5.5009 3.5102 2.2148 33 1 5.5120 1.7300 2.2257 34 1 3.5481 3.5489 3.6952 35 1 4.8095 2.5306 4.4331 36 1 4.7437 1.4429 5.6035 37 1 3.2651 -0.3668 7.1893 38 1 4.4033 -1.2992 6.1876 39 1 6.2852 0.0569 7.0651 40 1 5.1464 0.9889 8.0664 41 1 4.4846 -1.0895 9.2468 42 1 5.6235 -2.0208 8.2449 43 1 7.9762 -1.8133 12.3116 44 1 1.5302 2.1450 2.4972 45 1 1.7143 0.3746 2.5929 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595489211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:17 Heat of formation + Delta-G solvation = -31.639681 kcal Electronic energy + Delta-G solvation = -21811.028322 eV Core-core repulsion = 18635.133686 eV Total energy + Delta-G solvation = -3175.894636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47396 -38.22625 -35.52198 -35.47801 -33.37729 -32.77706 -31.50489 -31.05828 -27.48439 -26.52402 -25.29550 -22.76109 -22.68255 -20.79645 -20.46561 -20.05566 -19.32371 -18.07942 -16.76465 -16.24551 -15.78189 -15.40356 -15.07190 -14.73795 -14.59117 -14.42191 -13.99932 -13.87138 -13.53988 -13.23449 -13.06510 -12.69545 -12.47030 -12.38933 -11.95897 -11.89656 -11.51694 -11.38452 -11.20632 -11.05451 -10.93954 -10.87349 -10.60339 -10.19231 -9.98432 -9.79546 -9.66343 -9.55658 -9.21480 -8.96548 -8.54626 -8.48629 -6.05403 -4.03980 2.03418 2.67919 3.30615 3.32541 3.40013 3.44986 3.94493 4.33063 4.45562 4.45681 4.50362 4.67403 4.81312 4.91500 5.00381 5.12518 5.23487 5.28912 5.32191 5.37818 5.45538 5.52422 5.55933 5.58355 5.64536 5.71068 5.72401 5.79951 5.86442 6.06231 6.07089 6.36256 6.38017 6.45698 6.49078 6.50944 6.72744 6.85158 6.99399 7.25048 7.38499 7.76809 8.05086 8.51196 8.71204 8.98371 9.57030 11.07845 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028892 B = 0.002908 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.893730 B = 9626.376798 C =10344.055093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.100 4.100 5 H 0.076 0.924 6 C -0.113 4.113 7 C -0.136 4.136 8 C 0.110 3.890 9 N -0.633 5.633 10 C 0.705 3.295 11 O -0.592 6.592 12 N -0.743 5.743 13 C 0.132 3.868 14 C -0.112 4.112 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.137 3.863 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.394 0.606 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.060 0.940 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 9.432 -24.920 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.172 4.172 3 C -0.123 4.123 4 C -0.119 4.119 5 H 0.095 0.905 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.371 5.371 10 C 0.406 3.594 11 O -0.470 6.470 12 N -0.399 5.399 13 C 0.008 3.992 14 C -0.150 4.150 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.188 1.188 24 C 0.014 3.986 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.636 8.689 -24.681 28.245 hybrid contribution -0.027 -0.455 0.298 0.545 sum -10.663 8.234 -24.383 27.858 Atomic orbital electron populations 1.23845 0.95955 1.01829 1.01421 1.22960 0.96103 0.98522 0.99614 1.20759 0.97977 0.95623 0.97985 1.21539 0.97062 0.98997 0.94321 0.90530 1.21565 0.97623 0.97550 0.98362 1.21922 0.98081 1.02902 0.94493 1.21627 0.92249 0.89246 0.98220 1.47264 1.39854 1.27643 1.22373 1.15906 0.81933 0.81769 0.79794 1.90897 1.40621 1.37122 1.78408 1.45517 1.36120 1.29561 1.28725 1.21512 1.00163 0.89942 0.87532 1.21702 0.95897 1.01058 0.96390 1.19501 0.97708 0.93968 0.93706 1.21100 1.15406 1.10511 1.08918 0.91031 1.25025 0.94919 0.97880 0.95668 1.69911 1.30337 1.38549 1.15462 0.86775 0.81642 0.83659 0.77236 1.20247 1.21388 1.18841 1.21469 0.90516 1.03254 0.83400 0.88553 0.88679 0.87383 0.90661 0.91307 0.91599 0.91699 0.90569 0.91263 0.91395 0.90250 0.77002 0.91924 0.92101 0.92231 0.92166 0.96259 0.96721 0.92714 0.92159 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.32 29.01 0.42 -1.06 16 2 C -0.15 -1.21 8.61 -36.03 -0.31 -1.52 16 3 C -0.09 -0.57 5.14 -27.88 -0.14 -0.72 16 4 C -0.10 -0.79 2.33 -90.50 -0.21 -1.00 16 5 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.11 -0.73 5.17 -26.69 -0.14 -0.87 16 7 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 8 C 0.11 0.93 6.43 -3.71 -0.02 0.91 16 9 N -0.63 -7.49 2.97 -178.50 -0.53 -8.02 16 10 C 0.70 11.14 8.30 -86.92 -0.72 10.42 16 11 O -0.59 -11.73 15.79 5.29 0.08 -11.65 16 12 N -0.74 -10.99 5.47 -65.23 -0.36 -11.35 16 13 C 0.13 2.29 5.68 -4.04 -0.02 2.26 16 14 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 C 0.14 1.43 5.42 -3.71 -0.02 1.41 16 25 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 26 H 0.09 0.64 7.84 -52.49 -0.41 0.23 16 27 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 7.79 -51.93 -0.40 0.02 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.64 5.56 -51.93 -0.29 0.35 16 36 H 0.39 4.78 5.93 -40.82 -0.24 4.54 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.22 6.47 -51.93 -0.34 0.88 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -33.33 356.80 -9.30 -42.62 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.96 Total: 0.05 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.02 Total: -7.17 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.11 Total: -46.46 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.33 -9.30 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.984 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds