Wall clock time and date at job start Tue Mar 31 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00120 * 2 1 4 4 C 1.53004 * 109.47191 * 124.99908 * 3 2 1 5 5 H 1.09003 * 109.49587 * 55.06234 * 4 3 2 6 6 C 1.53038 * 109.49900 * 175.16478 * 4 3 2 7 7 C 1.53040 * 109.53713 * 181.31632 * 6 4 3 8 8 C 1.53189 * 109.31463 * 298.63265 * 7 6 4 9 9 N 1.46930 * 108.77329 * 54.63597 * 8 7 6 10 10 C 1.34775 * 120.63025 * 126.41984 * 9 8 7 11 11 O 1.21584 * 120.00118 * 174.94315 * 10 9 8 12 12 N 1.34781 * 120.00102 * 354.93131 * 10 9 8 13 13 C 1.46496 * 120.00147 * 185.07858 * 12 10 9 14 14 C 1.53004 * 109.47151 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46908 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.46894 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99768 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99924 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99782 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99953 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46776 * 90.00316 * 20 18 16 22 22 H 1.48501 * 109.46886 * 209.99782 * 20 18 16 23 23 H 1.48495 * 109.47089 * 329.99952 * 20 18 16 24 24 C 1.46923 * 118.73648 * 306.39026 * 9 8 7 25 25 H 1.07996 * 120.00010 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99702 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99702 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47543 * 244.99713 * 3 2 1 29 29 H 1.09001 * 109.47362 * 5.00269 * 3 2 1 30 30 H 1.08996 * 109.46041 * 301.33449 * 6 4 3 31 31 H 1.08994 * 109.46089 * 61.29470 * 6 4 3 32 32 H 1.08996 * 109.49780 * 178.67719 * 7 6 4 33 33 H 1.09005 * 109.52452 * 58.60049 * 7 6 4 34 34 H 1.09000 * 109.58645 * 294.85118 * 8 7 6 35 35 H 1.08999 * 109.70789 * 174.49385 * 8 7 6 36 36 H 0.97006 * 119.99716 * 5.07407 * 12 10 9 37 37 H 1.08996 * 109.46956 * 300.00120 * 13 12 10 38 38 H 1.08994 * 109.47049 * 60.00251 * 13 12 10 39 39 H 1.09005 * 109.46796 * 299.99848 * 14 13 12 40 40 H 1.08998 * 109.46878 * 59.99344 * 14 13 12 41 41 H 1.09005 * 109.47161 * 299.99494 * 15 14 13 42 42 H 1.08994 * 109.47278 * 59.99947 * 15 14 13 43 43 H 0.97004 * 120.00237 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58939 * 293.81913 * 24 9 8 45 45 H 1.09005 * 109.58340 * 173.39676 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 1 3.6837 0.4580 1.1402 6 6 3.8854 2.6037 1.1139 7 6 4.8799 2.6166 2.2770 8 6 4.1104 2.6199 3.6016 9 7 3.1835 1.4799 3.6129 10 6 3.1939 0.5964 4.6306 11 8 2.3622 -0.2893 4.6753 12 7 4.1265 0.6946 5.5988 13 6 4.2080 -0.3287 6.6438 14 6 5.3421 0.0185 7.6104 15 6 5.4276 -1.0507 8.7014 16 6 6.5443 -0.7083 9.6538 17 1 7.1342 0.1826 9.4963 18 6 6.8127 -1.5323 10.7262 19 7 7.7875 -1.2338 11.5569 20 14 5.7918 -3.0727 10.9989 21 1 6.4171 -4.2140 10.2836 22 1 5.7286 -3.3738 12.4517 23 1 4.4183 -2.8548 10.4784 24 6 2.2446 1.3218 2.4939 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6214 1.4026 -0.9313 29 1 1.3587 2.1316 0.0896 30 1 4.4301 2.6262 0.1701 31 1 3.2378 3.4779 1.1801 32 1 5.5009 3.5102 2.2148 33 1 5.5120 1.7300 2.2257 34 1 3.5481 3.5489 3.6952 35 1 4.8095 2.5306 4.4331 36 1 4.7437 1.4429 5.6035 37 1 3.2651 -0.3668 7.1893 38 1 4.4033 -1.2992 6.1876 39 1 6.2852 0.0569 7.0651 40 1 5.1464 0.9889 8.0664 41 1 4.4846 -1.0895 9.2468 42 1 5.6235 -2.0208 8.2449 43 1 7.9762 -1.8133 12.3116 44 1 1.5302 2.1450 2.4972 45 1 1.7143 0.3746 2.5929 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595489211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:16 Heat of formation + Delta-G solvation = -51.911835 kcal Electronic energy + Delta-G solvation = -21811.907389 eV Core-core repulsion = 18635.133686 eV Total energy + Delta-G solvation = -3176.773703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51199 -39.12787 -37.00461 -36.24891 -35.13794 -33.80263 -33.02094 -31.92277 -29.09130 -27.25755 -26.32924 -24.36988 -23.37909 -22.22238 -21.58324 -20.69892 -20.30453 -19.24041 -18.75194 -17.40882 -16.90989 -16.35349 -16.22645 -15.77270 -15.70129 -15.47052 -15.35597 -14.80100 -14.68514 -14.38245 -14.19378 -13.80099 -13.72806 -13.55399 -13.17315 -12.96360 -12.73802 -12.68742 -12.15700 -11.96859 -11.91578 -11.81762 -11.77758 -11.62098 -11.58733 -11.33290 -11.22591 -11.15764 -10.76085 -10.24864 -10.14406 -9.46544 -8.29331 -6.33009 1.36909 1.38666 1.43370 1.50664 1.62719 2.09603 2.36540 2.93030 3.06484 3.71952 3.83589 3.88084 4.06170 4.10218 4.19595 4.20703 4.29051 4.40034 4.44228 4.50152 4.61396 4.75293 4.80830 4.83791 4.87981 4.89227 4.90078 4.99902 5.03572 5.07170 5.13241 5.22626 5.27541 5.40721 5.47912 5.50961 5.55565 5.58427 5.65658 5.79249 5.90347 5.94141 6.27578 6.74629 6.94474 7.31809 7.52170 8.87023 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028892 B = 0.002908 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.893730 B = 9626.376798 C =10344.055093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.079 4.079 4 C -0.091 4.091 5 H 0.058 0.942 6 C -0.110 4.110 7 C -0.132 4.132 8 C 0.102 3.898 9 N -0.627 5.627 10 C 0.698 3.302 11 O -0.639 6.639 12 N -0.734 5.734 13 C 0.146 3.854 14 C -0.098 4.098 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 C 0.134 3.866 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.408 0.592 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.266 0.734 44 H 0.075 0.925 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.864 10.443 -26.654 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.184 4.184 3 C -0.117 4.117 4 C -0.111 4.111 5 H 0.076 0.924 6 C -0.147 4.147 7 C -0.170 4.170 8 C -0.020 4.020 9 N -0.364 5.364 10 C 0.399 3.601 11 O -0.521 6.521 12 N -0.392 5.392 13 C 0.021 3.979 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.172 1.172 24 C 0.011 3.989 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.357 9.757 -26.461 30.403 hybrid contribution 0.239 -0.683 0.805 1.083 sum -11.118 9.074 -25.655 29.396 Atomic orbital electron populations 1.23981 0.96047 1.02363 1.01184 1.23087 0.96391 0.99008 0.99888 1.20741 0.97871 0.95136 0.97926 1.21451 0.96956 0.99383 0.93294 0.92365 1.21569 0.97481 0.96831 0.98816 1.21915 0.98044 1.03387 0.93656 1.21938 0.92110 0.88481 0.99459 1.47364 1.40204 1.27494 1.21315 1.16106 0.81509 0.81966 0.80519 1.90862 1.42407 1.39261 1.79563 1.45254 1.36393 1.29507 1.28077 1.21148 0.98776 0.90319 0.87626 1.21466 0.96893 0.99721 0.95495 1.19461 0.95761 0.95623 0.94121 1.21452 1.16131 1.09295 1.09880 0.94298 1.25963 0.96176 1.01539 0.95477 1.70051 1.32361 1.40259 1.16386 0.85713 0.80528 0.79400 0.77369 1.19232 1.20987 1.17249 1.21583 0.90889 1.02259 0.84161 0.88736 0.87557 0.88349 0.89207 0.90136 0.90125 0.90300 0.88227 0.92637 0.89446 0.89944 0.75338 0.92905 0.92827 0.91666 0.91714 0.96140 0.96215 0.92498 0.90672 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.92 14.32 67.78 0.97 -1.95 16 2 C -0.17 -2.52 8.61 25.64 0.22 -2.29 16 3 C -0.08 -0.90 5.14 29.85 0.15 -0.75 16 4 C -0.09 -1.30 2.33 -10.72 -0.02 -1.32 16 5 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 6 C -0.11 -1.05 5.17 30.62 0.16 -0.89 16 7 C -0.13 -1.44 6.08 30.67 0.19 -1.26 16 8 C 0.10 1.47 6.43 86.36 0.56 2.02 16 9 N -0.63 -14.06 2.97 -836.91 -2.49 -16.55 16 10 C 0.70 21.77 8.30 179.05 1.49 23.26 16 11 O -0.64 -25.71 15.79 -3.98 -0.06 -25.77 16 12 N -0.73 -21.01 5.47 -478.55 -2.62 -23.62 16 13 C 0.15 4.94 5.68 86.38 0.49 5.43 16 14 C -0.10 -3.62 5.27 30.60 0.16 -3.46 16 15 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 16 C -0.53 -30.24 9.66 25.60 0.25 -29.99 16 17 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 18 C 0.01 0.31 5.47 84.66 0.46 0.78 16 19 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 20 Si 0.95 44.80 27.47 68.60 1.88 46.69 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 24 C 0.13 2.67 5.42 86.36 0.47 3.14 16 25 H 0.09 1.37 8.06 -2.91 -0.02 1.35 16 26 H 0.11 1.28 7.84 -2.91 -0.02 1.26 16 27 H 0.10 1.64 8.06 -2.91 -0.02 1.61 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.75 7.79 -2.39 -0.02 0.73 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.12 5.56 -2.39 -0.01 1.11 16 36 H 0.41 9.22 5.93 -92.70 -0.55 8.67 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.02 0.94 7.20 -2.38 -0.02 0.93 16 42 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.70 6.47 -2.38 -0.02 1.68 16 Total: -1.00 -73.20 356.80 3.01 -70.19 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.34 Total: 16.00 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.66 Total: -7.70 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.81 Total: -99.40 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -73.20 3.01 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595489211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.276 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds