Wall clock time and date at job start Tue Mar 31 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99715 * 2 1 4 4 C 1.52998 * 109.47197 * 239.72568 * 3 2 1 5 5 C 1.53002 * 109.46850 * 359.72398 * 3 2 1 6 6 C 1.52998 * 109.47193 * 119.72355 * 3 2 1 7 7 N 1.46496 * 109.47198 * 180.02562 * 6 3 2 8 8 C 1.34774 * 120.00472 * 180.02562 * 7 6 3 9 9 O 1.21591 * 119.99410 * 355.01430 * 8 7 6 10 10 N 1.34774 * 120.00445 * 175.01642 * 8 7 6 11 11 C 1.46922 * 120.62851 * 5.22756 * 10 8 7 12 12 C 1.53192 * 108.77620 * 126.36885 * 11 10 8 13 13 C 1.53047 * 109.31341 * 54.63174 * 12 11 10 14 14 C 1.53041 * 109.53693 * 298.63692 * 13 12 11 15 15 H 1.09007 * 109.49519 * 301.41017 * 14 13 12 16 16 C 1.50700 * 109.49661 * 181.34853 * 14 13 12 17 17 H 1.08002 * 119.99767 * 359.97438 * 16 14 13 18 18 C 1.37872 * 120.00215 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99857 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00398 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47334 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.47192 * 210.00669 * 20 18 16 23 23 H 1.48497 * 109.47001 * 330.00376 * 20 18 16 24 24 C 1.46926 * 120.62854 * 184.94512 * 10 8 7 25 25 H 1.07996 * 120.00595 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99386 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00772 * 179.72723 * 2 1 3 28 28 H 1.09005 * 109.47489 * 59.99546 * 4 3 2 29 29 H 1.09002 * 109.47511 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47020 * 299.99919 * 4 3 2 31 31 H 1.08993 * 109.47124 * 60.00120 * 5 3 2 32 32 H 1.09002 * 109.46851 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47096 * 299.99391 * 5 3 2 34 34 H 1.08993 * 109.47218 * 300.00148 * 6 3 2 35 35 H 1.08999 * 109.47030 * 60.00077 * 6 3 2 36 36 H 0.97005 * 119.99843 * 359.97438 * 7 6 3 37 37 H 1.09009 * 109.58541 * 246.15136 * 11 10 8 38 38 H 1.08993 * 109.58836 * 6.57979 * 11 10 8 39 39 H 1.09001 * 109.49945 * 174.58196 * 12 11 10 40 40 H 1.09004 * 109.49869 * 294.68225 * 12 11 10 41 41 H 1.09000 * 109.45725 * 58.65578 * 13 12 11 42 42 H 1.09002 * 109.45861 * 178.61192 * 13 12 11 43 43 H 0.96996 * 120.00344 * 179.97438 * 19 18 16 44 44 H 1.08990 * 109.58961 * 353.41657 * 24 10 8 45 45 H 1.09004 * 109.58565 * 113.84910 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9482 1.3833 -1.2458 5 6 1.0691 2.4680 -0.0069 6 6 2.9378 1.3893 1.2527 7 7 3.6698 2.6583 1.2530 8 6 4.5082 2.9525 2.2663 9 8 4.5891 2.2077 3.2241 10 7 5.2569 4.0721 2.2182 11 6 5.0880 5.0391 1.1250 12 6 4.8380 6.4254 1.7271 13 6 5.9699 6.7667 2.6990 14 6 5.9939 5.7431 3.8365 15 1 5.0328 5.7483 4.3509 16 6 7.0875 6.0990 4.8104 17 1 7.7044 6.9682 4.6357 18 6 7.3005 5.3152 5.9245 19 7 6.5496 4.2566 6.1370 20 14 8.6565 5.7559 7.1313 21 1 8.1138 6.6596 8.1773 22 1 9.1750 4.5180 7.7669 23 1 9.7586 6.4405 6.4090 24 6 6.2531 4.3519 3.2613 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9352 0.0045 28 1 2.3253 1.3233 -2.1383 29 1 3.4929 2.3275 -1.2460 30 1 3.6566 0.5549 -1.2408 31 1 0.4388 2.4124 0.8805 32 1 1.6140 3.4120 -0.0074 33 1 0.4462 2.4081 -0.8995 34 1 2.3075 1.3337 2.1401 35 1 3.6462 0.5609 1.2576 36 1 3.5515 3.2866 0.5234 37 1 5.9914 5.0630 0.5155 38 1 4.2367 4.7493 0.5091 39 1 4.8067 7.1681 0.9299 40 1 3.8879 6.4241 2.2614 41 1 6.9224 6.7436 2.1696 42 1 5.8074 7.7630 3.1102 43 1 6.6997 3.7049 6.9205 44 1 6.1702 3.6089 4.0544 45 1 7.2534 4.3186 2.8296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595648509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:28 Heat of formation + Delta-G solvation = -17.670269 kcal Electronic energy + Delta-G solvation = -22926.539299 eV Core-core repulsion = 19751.250423 eV Total energy + Delta-G solvation = -3175.288877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87651 -38.27100 -36.60690 -33.86760 -33.08356 -31.69127 -30.63061 -29.66503 -27.53278 -26.62643 -25.00629 -24.14992 -21.92601 -21.73008 -19.96991 -19.02675 -18.24968 -17.49775 -16.20068 -15.82522 -15.46366 -15.15627 -14.64852 -14.33559 -14.22969 -13.71747 -13.63838 -13.43182 -13.11317 -12.75733 -12.53720 -12.41363 -12.24767 -11.92459 -11.91961 -11.75762 -11.25537 -10.99556 -10.93199 -10.87828 -10.78898 -10.46101 -10.37403 -10.18656 -9.83406 -9.57881 -9.36288 -9.05012 -8.90365 -8.65346 -8.36959 -7.58177 -5.93591 -4.03129 2.09219 3.30720 3.36767 3.41534 3.43674 3.92112 4.41460 4.49154 4.57542 4.60300 4.76307 5.06287 5.15960 5.30342 5.35896 5.40394 5.52082 5.54019 5.59851 5.61187 5.68145 5.82962 5.84774 5.94135 5.99229 6.10352 6.11239 6.19262 6.34483 6.43035 6.59976 6.62897 6.71260 6.84700 6.90499 7.03257 7.09395 7.41457 7.56693 7.79816 7.98411 8.12192 8.45887 8.65756 9.00684 9.33425 9.62313 11.11207 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.004001 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.377168 B = 6996.290194 C = 7627.868425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.144 4.144 6 C 0.155 3.845 7 N -0.755 5.755 8 C 0.699 3.301 9 O -0.582 6.582 10 N -0.623 5.623 11 C 0.116 3.884 12 C -0.134 4.134 13 C -0.109 4.109 14 C 0.039 3.961 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.129 3.871 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.263 0.737 44 H 0.123 0.877 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 -3.892 -16.255 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.157 4.157 3 C -0.051 4.051 4 C -0.194 4.194 5 C -0.202 4.202 6 C 0.030 3.970 7 N -0.416 5.416 8 C 0.400 3.600 9 O -0.459 6.459 10 N -0.360 5.360 11 C -0.008 4.008 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.515 5.515 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.766 -4.615 -15.395 18.807 hybrid contribution 0.621 0.508 0.291 0.853 sum -9.145 -4.108 -15.104 18.128 Atomic orbital electron populations 1.23998 0.96082 1.02120 1.01003 1.22777 0.95822 0.97305 0.99814 1.19928 0.95496 0.94031 0.95679 1.21813 0.99094 1.02271 0.96231 1.21963 0.98823 0.97323 1.02047 1.21024 0.93860 0.85814 0.96324 1.45373 1.48551 1.21738 1.25934 1.15960 0.79103 0.82324 0.82574 1.90931 1.70427 1.51371 1.33210 1.47769 1.40687 1.19733 1.27815 1.21471 0.99815 0.90051 0.89453 1.21952 1.00639 0.95362 0.99245 1.21610 0.95958 1.00121 0.97009 1.18908 0.97872 0.89698 0.91558 0.95391 1.21068 1.17094 1.11370 1.06498 0.92427 1.25061 0.96179 0.95036 0.97780 1.69904 1.38443 1.15289 1.27884 0.86608 0.82269 0.77822 0.81374 1.20734 1.21202 1.19946 1.22073 0.86377 1.02346 0.88368 0.87849 0.88587 0.87152 0.92424 0.92360 0.92163 0.91934 0.92392 0.92218 0.91747 0.91928 0.77385 0.92215 0.92375 0.92380 0.92216 0.93225 0.93108 0.92682 0.85898 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 13.70 29.02 0.40 -1.22 16 2 C -0.14 -1.27 8.76 -36.02 -0.32 -1.58 16 3 C -0.05 -0.50 0.75 -155.66 -0.12 -0.62 16 4 C -0.14 -1.20 8.28 37.16 0.31 -0.89 16 5 C -0.14 -1.31 6.95 37.16 0.26 -1.05 16 6 C 0.15 2.11 4.55 -4.05 -0.02 2.09 16 7 N -0.76 -11.55 4.87 -65.23 -0.32 -11.87 16 8 C 0.70 14.68 8.30 -86.92 -0.72 13.96 16 9 O -0.58 -15.10 15.77 5.29 0.08 -15.02 16 10 N -0.62 -12.84 2.98 -178.77 -0.53 -13.37 16 11 C 0.12 1.82 6.39 -3.71 -0.02 1.80 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 14 C 0.04 0.98 2.24 -91.87 -0.21 0.77 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.52 -14.32 8.56 -34.44 -0.29 -14.62 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 19 N -0.88 -26.12 11.39 55.43 0.63 -25.49 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.13 3.20 5.39 -3.93 -0.02 3.18 16 25 H 0.10 0.81 5.69 -52.49 -0.30 0.51 16 26 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 27 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 7.48 -51.93 -0.39 0.22 16 32 H 0.06 0.53 6.86 -51.93 -0.36 0.17 16 33 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.39 4.88 3.65 -40.82 -0.15 4.73 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.06 0.72 5.65 -51.93 -0.29 0.43 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.12 3.59 5.11 -51.93 -0.27 3.33 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -32.21 346.77 -8.61 -40.82 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.53 Total: 4.39 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.15 Total: -1.18 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.22 Total: -50.72 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.21 -8.61 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595648509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.147 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds