Wall clock time and date at job start Tue Mar 31 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99715 * 2 1 4 4 C 1.52998 * 109.47197 * 239.72568 * 3 2 1 5 5 C 1.53002 * 109.46850 * 359.72398 * 3 2 1 6 6 C 1.52998 * 109.47193 * 119.72355 * 3 2 1 7 7 N 1.46496 * 109.47198 * 180.02562 * 6 3 2 8 8 C 1.34774 * 120.00472 * 180.02562 * 7 6 3 9 9 O 1.21591 * 119.99410 * 355.01430 * 8 7 6 10 10 N 1.34774 * 120.00445 * 175.01642 * 8 7 6 11 11 C 1.46922 * 120.62851 * 5.22756 * 10 8 7 12 12 C 1.53192 * 108.77620 * 126.36885 * 11 10 8 13 13 C 1.53047 * 109.31341 * 54.63174 * 12 11 10 14 14 C 1.53041 * 109.53693 * 298.63692 * 13 12 11 15 15 H 1.09007 * 109.49519 * 301.41017 * 14 13 12 16 16 C 1.50700 * 109.49661 * 181.34853 * 14 13 12 17 17 H 1.08002 * 119.99767 * 359.97438 * 16 14 13 18 18 C 1.37872 * 120.00215 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99857 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00398 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47334 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.47192 * 210.00669 * 20 18 16 23 23 H 1.48497 * 109.47001 * 330.00376 * 20 18 16 24 24 C 1.46926 * 120.62854 * 184.94512 * 10 8 7 25 25 H 1.07996 * 120.00595 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99386 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00772 * 179.72723 * 2 1 3 28 28 H 1.09005 * 109.47489 * 59.99546 * 4 3 2 29 29 H 1.09002 * 109.47511 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47020 * 299.99919 * 4 3 2 31 31 H 1.08993 * 109.47124 * 60.00120 * 5 3 2 32 32 H 1.09002 * 109.46851 * 180.02562 * 5 3 2 33 33 H 1.09002 * 109.47096 * 299.99391 * 5 3 2 34 34 H 1.08993 * 109.47218 * 300.00148 * 6 3 2 35 35 H 1.08999 * 109.47030 * 60.00077 * 6 3 2 36 36 H 0.97005 * 119.99843 * 359.97438 * 7 6 3 37 37 H 1.09009 * 109.58541 * 246.15136 * 11 10 8 38 38 H 1.08993 * 109.58836 * 6.57979 * 11 10 8 39 39 H 1.09001 * 109.49945 * 174.58196 * 12 11 10 40 40 H 1.09004 * 109.49869 * 294.68225 * 12 11 10 41 41 H 1.09000 * 109.45725 * 58.65578 * 13 12 11 42 42 H 1.09002 * 109.45861 * 178.61192 * 13 12 11 43 43 H 0.96996 * 120.00344 * 179.97438 * 19 18 16 44 44 H 1.08990 * 109.58961 * 353.41657 * 24 10 8 45 45 H 1.09004 * 109.58565 * 113.84910 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9482 1.3833 -1.2458 5 6 1.0691 2.4680 -0.0069 6 6 2.9378 1.3893 1.2527 7 7 3.6698 2.6583 1.2530 8 6 4.5082 2.9525 2.2663 9 8 4.5891 2.2077 3.2241 10 7 5.2569 4.0721 2.2182 11 6 5.0880 5.0391 1.1250 12 6 4.8380 6.4254 1.7271 13 6 5.9699 6.7667 2.6990 14 6 5.9939 5.7431 3.8365 15 1 5.0328 5.7483 4.3509 16 6 7.0875 6.0990 4.8104 17 1 7.7044 6.9682 4.6357 18 6 7.3005 5.3152 5.9245 19 7 6.5496 4.2566 6.1370 20 14 8.6565 5.7559 7.1313 21 1 8.1138 6.6596 8.1773 22 1 9.1750 4.5180 7.7669 23 1 9.7586 6.4405 6.4090 24 6 6.2531 4.3519 3.2613 25 1 -0.5401 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9352 0.0045 28 1 2.3253 1.3233 -2.1383 29 1 3.4929 2.3275 -1.2460 30 1 3.6566 0.5549 -1.2408 31 1 0.4388 2.4124 0.8805 32 1 1.6140 3.4120 -0.0074 33 1 0.4462 2.4081 -0.8995 34 1 2.3075 1.3337 2.1401 35 1 3.6462 0.5609 1.2576 36 1 3.5515 3.2866 0.5234 37 1 5.9914 5.0630 0.5155 38 1 4.2367 4.7493 0.5091 39 1 4.8067 7.1681 0.9299 40 1 3.8879 6.4241 2.2614 41 1 6.9224 6.7436 2.1696 42 1 5.8074 7.7630 3.1102 43 1 6.6997 3.7049 6.9205 44 1 6.1702 3.6089 4.0544 45 1 7.2534 4.3186 2.8296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595648509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:27 Heat of formation + Delta-G solvation = -37.490425 kcal Electronic energy + Delta-G solvation = -22927.398766 eV Core-core repulsion = 19751.250423 eV Total energy + Delta-G solvation = -3176.148343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39197 -39.36220 -38.20795 -35.51122 -34.74889 -33.35191 -31.67084 -31.26769 -28.23807 -27.86492 -26.89673 -25.70105 -23.45031 -22.80845 -21.56586 -20.54492 -19.35641 -18.81123 -18.21281 -17.23303 -16.66552 -16.48303 -16.34782 -15.64444 -15.35211 -15.20223 -15.10636 -14.67050 -14.42553 -14.28262 -14.14181 -13.83654 -13.50752 -13.08668 -12.87940 -12.86240 -12.67524 -12.58465 -12.26083 -12.22278 -12.04885 -11.85444 -11.79664 -11.61927 -11.51014 -11.22044 -10.94159 -10.82235 -10.50317 -10.26154 -10.13800 -9.23958 -8.08364 -6.26486 1.36973 1.41340 1.42314 1.53179 1.87232 2.25832 2.43095 3.07900 3.21194 3.75105 3.80661 3.92613 4.05270 4.16593 4.28256 4.30458 4.46028 4.60843 4.67306 4.69605 4.73879 4.82127 4.82827 4.85887 4.90670 4.97563 5.05720 5.11729 5.14695 5.27458 5.28601 5.32484 5.35779 5.39868 5.55333 5.58436 5.66945 5.77421 5.90726 5.92152 6.00001 6.18696 6.37594 6.87360 7.15353 7.43720 7.70650 8.94616 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.004001 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.377168 B = 6996.290194 C = 7627.868425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.040 4.040 4 C -0.136 4.136 5 C -0.145 4.145 6 C 0.153 3.847 7 N -0.728 5.728 8 C 0.691 3.309 9 O -0.642 6.642 10 N -0.627 5.627 11 C 0.110 3.890 12 C -0.126 4.126 13 C -0.104 4.104 14 C 0.038 3.962 15 H -0.018 1.018 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.915 5.915 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.260 1.260 24 C 0.143 3.857 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.406 0.594 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -2.570 -19.178 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.040 4.040 4 C -0.193 4.193 5 C -0.202 4.202 6 C 0.029 3.971 7 N -0.389 5.389 8 C 0.392 3.608 9 O -0.524 6.524 10 N -0.363 5.363 11 C -0.012 4.012 12 C -0.164 4.164 13 C -0.142 4.142 14 C 0.018 3.982 15 H 0.001 0.999 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.020 3.980 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.247 0.753 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.285 -3.250 -18.401 21.329 hybrid contribution 0.710 0.082 1.186 1.385 sum -9.575 -3.168 -17.214 19.951 Atomic orbital electron populations 1.24187 0.95797 1.03063 0.99177 1.22800 0.96260 0.97039 1.01430 1.19845 0.95197 0.95041 0.93965 1.21820 0.99081 1.02253 0.96131 1.21983 0.98736 0.96787 1.02675 1.21147 0.93633 0.84460 0.97862 1.45105 1.46737 1.22482 1.24589 1.16242 0.79657 0.81939 0.82919 1.90889 1.72301 1.53315 1.35869 1.47669 1.39724 1.20764 1.28174 1.21863 1.02615 0.88482 0.88254 1.21916 0.98144 0.96854 0.99496 1.21500 0.98275 0.98302 0.96114 1.18842 0.94751 0.91623 0.92965 0.99935 1.21527 1.17506 1.11254 1.07155 0.91860 1.25930 0.98508 0.94843 0.99860 1.70119 1.40435 1.16550 1.28282 0.85547 0.79589 0.77441 0.79035 1.20134 1.21431 1.18451 1.21474 0.87344 1.00749 0.88426 0.87216 0.87385 0.86993 0.90612 0.92033 0.92635 0.92837 0.92217 0.90098 0.93963 0.93140 0.75331 0.90003 0.88456 0.87563 0.93390 0.92276 0.93011 0.93237 0.90791 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 13.70 67.78 0.93 -1.75 16 2 C -0.16 -2.63 8.76 25.65 0.22 -2.41 16 3 C -0.04 -0.72 0.75 -52.93 -0.04 -0.76 16 4 C -0.14 -2.01 8.28 71.98 0.60 -1.41 16 5 C -0.14 -2.26 6.95 71.98 0.50 -1.76 16 6 C 0.15 4.20 4.55 86.38 0.39 4.59 16 7 N -0.73 -21.76 4.87 -478.56 -2.33 -24.09 16 8 C 0.69 29.68 8.30 179.06 1.49 31.16 16 9 O -0.64 -35.31 15.77 -4.00 -0.06 -35.37 16 10 N -0.63 -25.90 2.98 -837.76 -2.49 -28.40 16 11 C 0.11 3.10 6.39 86.36 0.55 3.66 16 12 C -0.13 -3.69 6.08 30.67 0.19 -3.51 16 13 C -0.10 -4.04 5.11 30.62 0.16 -3.89 16 14 C 0.04 1.94 2.24 -11.61 -0.03 1.91 16 15 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 16 C -0.54 -30.05 8.56 25.60 0.22 -29.83 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 18 C 0.01 0.45 5.31 84.65 0.45 0.90 16 19 N -0.92 -57.30 11.39 21.45 0.24 -57.05 16 20 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 24 C 0.14 7.37 5.39 86.22 0.46 7.84 16 25 H 0.11 1.44 5.69 -2.91 -0.02 1.42 16 26 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.11 1.81 8.06 -2.91 -0.02 1.79 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.86 6.86 -2.39 -0.02 0.84 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.94 7.48 -2.39 -0.02 0.92 16 32 H 0.06 0.90 6.86 -2.39 -0.02 0.89 16 33 H 0.08 0.95 7.51 -2.39 -0.02 0.93 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 9.12 3.65 -92.70 -0.34 8.78 16 37 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.10 1.98 5.65 -2.39 -0.01 1.97 16 39 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.07 4.61 5.11 -2.39 -0.01 4.59 16 45 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -76.09 346.77 4.09 -72.00 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.62 Total: 21.09 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.09 Total: 4.75 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.58 Total: -109.53 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.06 Total: -35.37 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.09 4.09 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595648509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.506 kcal (2) G-P(sol) polarization free energy of solvation -76.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds