Wall clock time and date at job start Tue Mar 31 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00223 * 2 1 4 4 C 1.53002 * 109.47069 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47014 * 239.99935 * 3 2 1 6 6 C 1.52999 * 109.47436 * 119.99653 * 3 2 1 7 7 N 1.46500 * 109.47061 * 180.02562 * 6 3 2 8 8 C 1.34773 * 119.99664 * 180.02562 * 7 6 3 9 9 O 1.21587 * 120.00215 * 4.97934 * 8 7 6 10 10 N 1.34782 * 119.99971 * 184.98679 * 8 7 6 11 11 C 1.46928 * 120.62925 * 354.76182 * 10 8 7 12 12 C 1.53184 * 108.89692 * 233.52206 * 11 10 8 13 13 C 1.53078 * 109.29479 * 305.57893 * 12 11 10 14 14 C 1.53042 * 109.65463 * 61.15451 * 13 12 11 15 15 H 1.08998 * 109.49921 * 58.65509 * 14 13 12 16 16 C 1.50699 * 109.49173 * 178.74692 * 14 13 12 17 17 H 1.08003 * 120.00625 * 359.84130 * 16 14 13 18 18 C 1.37884 * 119.99631 * 179.83624 * 16 14 13 19 19 N 1.31510 * 120.00076 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99717 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46978 * 120.00129 * 20 18 16 23 23 H 1.48502 * 109.47056 * 239.99759 * 20 18 16 24 24 C 1.46917 * 120.63344 * 174.75040 * 10 8 7 25 25 H 1.07997 * 119.99783 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99783 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99932 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47272 * 180.02562 * 4 3 2 29 29 H 1.09005 * 109.46654 * 300.00588 * 4 3 2 30 30 H 1.09001 * 109.46760 * 60.00108 * 4 3 2 31 31 H 1.09001 * 109.47103 * 299.99683 * 5 3 2 32 32 H 1.08998 * 109.47643 * 59.99613 * 5 3 2 33 33 H 1.09006 * 109.47305 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.47003 * 60.00120 * 6 3 2 35 35 H 1.09001 * 109.47176 * 300.00371 * 6 3 2 36 36 H 0.96995 * 120.00077 * 0.02562 * 7 6 3 37 37 H 1.09007 * 109.58594 * 353.38776 * 11 10 8 38 38 H 1.09006 * 109.58195 * 113.65821 * 11 10 8 39 39 H 1.08997 * 109.49909 * 65.39169 * 12 11 10 40 40 H 1.09001 * 109.49532 * 185.48518 * 12 11 10 41 41 H 1.09003 * 109.34539 * 301.13037 * 13 12 11 42 42 H 1.08995 * 109.43884 * 181.23681 * 13 12 11 43 43 H 0.97005 * 119.99960 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.59125 * 246.19698 * 24 10 8 45 45 H 1.08999 * 109.58791 * 6.61964 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3860 -1.2492 6 6 2.9431 1.3862 1.2493 7 7 3.6752 2.6552 1.2495 8 6 4.5178 2.9468 2.2601 9 8 4.7398 2.1207 3.1242 10 7 5.1143 4.1543 2.3131 11 6 4.9467 5.1206 1.2190 12 6 6.3299 5.5682 0.7363 13 6 7.1349 6.0955 1.9268 14 6 7.3176 4.9804 2.9590 15 1 7.8297 4.1368 2.4964 16 6 8.1365 5.4945 4.1149 17 1 8.4937 6.5137 4.1127 18 6 8.4298 4.6635 5.1754 19 7 7.9952 3.4222 5.1779 20 14 9.4443 5.3008 6.6086 21 1 9.8078 6.7199 6.3654 22 1 8.6508 5.2010 7.8598 23 1 10.6803 4.4883 6.7402 24 6 5.9441 4.5294 3.4659 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.6143 3.4120 -0.0011 29 1 0.4430 2.4100 -0.8909 30 1 0.4424 2.4105 0.8891 31 1 3.6515 0.5576 -1.2492 32 1 2.3166 1.3283 -2.1393 33 1 3.4879 2.3302 -1.2495 34 1 3.6515 0.5577 1.2493 35 1 2.3165 1.3285 2.1392 36 1 3.5534 3.2854 0.5223 37 1 4.4067 4.6514 0.3965 38 1 4.3873 5.9848 1.5774 39 1 6.8524 4.7206 0.2930 40 1 6.2179 6.3568 -0.0079 41 1 6.6008 6.9289 2.3831 42 1 8.1117 6.4350 1.5823 43 1 8.2012 2.8377 5.9242 44 1 5.4684 5.3465 4.0082 45 1 6.0624 3.6701 4.1260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595648510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:31 Heat of formation + Delta-G solvation = -17.738573 kcal Electronic energy + Delta-G solvation = -22920.346172 eV Core-core repulsion = 19745.054333 eV Total energy + Delta-G solvation = -3175.291839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87396 -38.26848 -36.59716 -33.86643 -33.08084 -31.69328 -30.62905 -29.65368 -27.53774 -26.62651 -25.00655 -24.14495 -21.92531 -21.73200 -19.96847 -19.02942 -18.25320 -17.49701 -16.20350 -15.82835 -15.47407 -15.13575 -14.62687 -14.35231 -14.29404 -13.68978 -13.51256 -13.41902 -13.27680 -12.70608 -12.53396 -12.38823 -12.27910 -11.95242 -11.90109 -11.75048 -11.24411 -11.00894 -10.95297 -10.87666 -10.78293 -10.45757 -10.35895 -10.19094 -9.83310 -9.58309 -9.36179 -9.05711 -8.89249 -8.65425 -8.37777 -7.57911 -5.93779 -4.03122 2.08622 3.30502 3.36155 3.41666 3.44581 3.92023 4.41501 4.49087 4.57563 4.60243 4.75444 5.06188 5.15908 5.30131 5.35762 5.39742 5.52367 5.53843 5.59515 5.61652 5.68011 5.81875 5.85189 5.95008 5.99299 6.09141 6.11351 6.19034 6.34545 6.42646 6.59411 6.62519 6.71206 6.84714 6.90385 7.03129 7.09621 7.40783 7.56547 7.80003 7.98247 8.11816 8.45792 8.65729 9.00829 9.33370 9.62299 11.11008 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.003990 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.188418 B = 7015.765727 C = 7676.084370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 C -0.051 4.051 4 C -0.144 4.144 5 C -0.137 4.137 6 C 0.155 3.845 7 N -0.755 5.755 8 C 0.699 3.301 9 O -0.582 6.582 10 N -0.623 5.623 11 C 0.117 3.883 12 C -0.133 4.133 13 C -0.109 4.109 14 C 0.039 3.961 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.129 3.871 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.262 0.738 44 H 0.038 0.962 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 -1.632 -13.681 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.156 4.156 3 C -0.051 4.051 4 C -0.201 4.201 5 C -0.195 4.195 6 C 0.030 3.970 7 N -0.416 5.416 8 C 0.400 3.600 9 O -0.459 6.459 10 N -0.360 5.360 11 C -0.008 4.008 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.515 5.515 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C 0.008 3.992 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.560 -2.403 -12.884 18.859 hybrid contribution 0.477 0.572 0.383 0.837 sum -13.083 -1.831 -12.501 18.188 Atomic orbital electron populations 1.23991 0.96067 1.02089 1.01161 1.22790 0.95814 0.97357 0.99669 1.19929 0.95469 0.93997 0.95750 1.21962 0.98796 0.97351 1.02003 1.21816 0.99133 1.02373 0.96138 1.21026 0.93694 0.86126 0.96177 1.45374 1.48253 1.21734 1.26239 1.15962 0.79109 0.82820 0.82069 1.90929 1.66680 1.47458 1.40861 1.47768 1.52223 1.13295 1.22724 1.21463 0.97332 0.92683 0.89302 1.21952 0.96042 1.00378 0.98816 1.21615 0.98103 0.99631 0.95342 1.18982 0.92429 0.93283 0.93305 0.95351 1.21112 1.33039 0.98085 1.03735 0.92379 1.25066 0.95788 0.94847 0.98378 1.69918 1.44742 1.05421 1.31415 0.86556 0.80066 0.78909 0.82585 1.19833 1.20999 1.21053 1.22161 0.89417 1.01920 0.85673 0.87885 0.88590 0.87112 0.92394 0.92215 0.92011 0.92083 0.92422 0.92349 0.91711 0.91956 0.77384 0.92395 0.92262 0.92225 0.92353 0.93250 0.93110 0.92746 0.94352 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 13.70 29.01 0.40 -1.20 16 2 C -0.14 -1.26 8.76 -36.03 -0.32 -1.57 16 3 C -0.05 -0.50 0.75 -155.66 -0.12 -0.62 16 4 C -0.14 -1.26 6.95 37.16 0.26 -1.00 16 5 C -0.14 -1.24 8.28 37.16 0.31 -0.94 16 6 C 0.15 2.11 4.55 -4.04 -0.02 2.09 16 7 N -0.76 -11.55 4.87 -65.22 -0.32 -11.86 16 8 C 0.70 14.67 8.29 -86.92 -0.72 13.95 16 9 O -0.58 -15.09 15.77 5.29 0.08 -15.01 16 10 N -0.62 -12.84 2.97 -178.50 -0.53 -13.37 16 11 C 0.12 1.82 6.38 -3.71 -0.02 1.80 16 12 C -0.13 -2.16 6.09 -26.60 -0.16 -2.32 16 13 C -0.11 -2.19 5.10 -26.67 -0.14 -2.33 16 14 C 0.04 0.99 2.26 -91.65 -0.21 0.78 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.30 8.56 -34.44 -0.29 -14.59 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -26.09 11.39 55.43 0.63 -25.46 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.13 3.20 5.41 -3.72 -0.02 3.18 16 25 H 0.10 0.78 5.69 -52.49 -0.30 0.48 16 26 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 27 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 29 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 30 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.53 6.86 -51.93 -0.36 0.17 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.39 4.88 3.65 -40.82 -0.15 4.73 16 37 H 0.06 0.72 5.65 -51.92 -0.29 0.43 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.12 3.59 5.11 -51.93 -0.27 3.32 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -32.20 346.81 -8.61 -40.81 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.53 Total: 4.31 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.15 Total: -1.12 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.22 Total: -50.69 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.20 -8.61 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595648510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.068 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds