Wall clock time and date at job start Tue Mar 31 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47606 * 2 1 4 4 H 1.09008 * 109.46977 * 305.00442 * 3 2 1 5 5 N 1.46500 * 109.47030 * 64.99712 * 3 2 1 6 6 C 1.34771 * 120.00352 * 205.00067 * 5 3 2 7 7 O 1.21594 * 119.99838 * 5.38834 * 6 5 3 8 8 N 1.34776 * 120.00424 * 185.39542 * 6 5 3 9 9 C 1.46925 * 120.62539 * 354.96531 * 8 6 5 10 10 C 1.53196 * 108.77218 * 126.42225 * 9 8 6 11 11 C 1.53035 * 109.31390 * 54.63293 * 10 9 8 12 12 C 1.53045 * 109.53921 * 298.63550 * 11 10 9 13 13 H 1.08996 * 109.49474 * 301.41376 * 12 11 10 14 14 C 1.50703 * 109.49768 * 181.34762 * 12 11 10 15 15 H 1.07999 * 119.99926 * 0.06984 * 14 12 11 16 16 C 1.37878 * 119.99922 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00007 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00037 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47162 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47163 * 120.00238 * 18 16 14 21 21 H 1.48497 * 109.47187 * 240.00105 * 18 16 14 22 22 C 1.46996 * 120.61718 * 174.99994 * 8 6 5 23 23 C 1.52999 * 109.47429 * 185.00333 * 3 2 1 24 24 C 1.52995 * 117.49739 * 248.62384 * 23 3 2 25 25 C 1.52993 * 117.50039 * 179.97438 * 23 3 2 26 26 H 1.08997 * 109.47296 * 59.99573 * 1 2 3 27 27 H 1.08998 * 109.47571 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46652 * 300.00076 * 1 2 3 29 29 H 1.09003 * 109.46652 * 239.99924 * 2 1 3 30 30 H 1.08997 * 109.47296 * 120.00427 * 2 1 3 31 31 H 0.97001 * 120.00110 * 25.00842 * 5 3 2 32 32 H 1.09002 * 109.59209 * 6.63464 * 9 8 6 33 33 H 1.09003 * 109.58976 * 246.20241 * 9 8 6 34 34 H 1.09001 * 109.49709 * 294.68292 * 10 9 8 35 35 H 1.09001 * 109.49721 * 174.58492 * 10 9 8 36 36 H 1.09006 * 109.46118 * 178.61894 * 11 10 9 37 37 H 1.08997 * 109.44866 * 58.64826 * 11 10 9 38 38 H 0.96996 * 119.99724 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.58538 * 113.79894 * 22 8 6 40 40 H 1.09001 * 109.62747 * 353.34596 * 22 8 6 41 41 H 1.09003 * 115.54689 * 34.33138 * 23 3 2 42 42 H 1.08997 * 117.49789 * 359.97438 * 24 23 3 43 43 H 1.08995 * 117.49797 * 145.02192 * 24 23 3 44 44 H 1.08997 * 117.49906 * 214.98417 * 25 23 3 45 45 H 1.09002 * 117.49707 * 359.97100 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5258 3.4383 1.2996 7 8 1.6367 4.0961 0.2830 8 7 1.2763 4.0502 2.4742 9 6 1.0308 3.2636 3.6907 10 6 1.9910 3.7374 4.7863 11 6 1.8391 5.2486 4.9737 12 6 2.2017 5.9650 3.6707 13 1 3.2249 5.7147 3.3906 14 6 2.0837 7.4546 3.8660 15 1 1.7815 7.8514 4.8240 16 6 2.3624 8.3110 2.8220 17 7 2.7308 7.8279 1.6556 18 14 2.2169 10.1575 3.0643 19 1 1.7891 10.4417 4.4577 20 1 3.5339 10.7952 2.8115 21 1 1.2125 10.7034 2.1165 22 6 1.2439 5.5172 2.5622 23 6 3.5649 1.4442 -0.1258 24 6 4.3734 1.9028 1.0894 25 6 4.2706 2.8016 -0.1450 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4872 1.5661 2.0463 32 1 1.2044 2.2075 3.4842 33 1 0.0016 3.4096 4.0188 34 1 3.0162 3.5081 4.4956 35 1 1.7551 3.2293 5.7214 36 1 2.5037 5.5845 5.7698 37 1 0.8077 5.4794 5.2400 38 1 2.9265 8.4303 0.9211 39 1 0.2321 5.8468 2.7982 40 1 1.5584 5.9480 1.6116 41 1 3.9868 0.6491 -0.7406 42 1 3.8191 2.2035 1.9784 43 1 5.3275 1.4093 1.2745 44 1 5.1570 2.8991 -0.7718 45 1 3.6485 3.6933 -0.0686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595783392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:36 Heat of formation + Delta-G solvation = -11.520306 kcal Electronic energy + Delta-G solvation = -23675.196821 eV Core-core repulsion = 20500.174626 eV Total energy + Delta-G solvation = -3175.022195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10344 -37.87698 -36.24201 -34.46153 -33.39949 -32.07109 -31.31806 -29.65373 -26.91619 -25.02976 -24.22966 -22.21111 -21.81798 -21.55410 -20.51233 -19.59199 -18.76044 -17.41950 -16.17195 -16.13438 -15.83243 -14.68936 -14.37298 -14.22058 -13.89735 -13.79502 -13.69240 -13.31415 -13.00874 -12.60480 -12.43247 -12.25700 -12.04722 -11.87710 -11.37500 -11.29205 -11.15191 -10.98292 -10.93595 -10.87456 -10.46391 -10.37507 -10.20392 -9.98650 -9.85044 -9.62586 -9.33831 -9.07030 -8.91303 -8.56692 -8.39216 -7.60058 -5.95969 -4.04568 3.26551 3.33908 3.40901 3.43703 3.89724 4.14280 4.40584 4.48886 4.72933 5.01882 5.05038 5.29200 5.32525 5.33528 5.34390 5.43408 5.51672 5.61775 5.65872 5.74547 5.82329 5.87973 5.99279 6.01009 6.10204 6.18302 6.23316 6.26161 6.33211 6.46181 6.61997 6.69633 6.82252 6.84950 6.97804 7.02430 7.10822 7.38654 7.56068 7.79110 7.96698 8.10157 8.44288 8.65537 8.99151 9.32744 9.60940 11.09133 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.005211 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.150622 B = 5372.042860 C = 5819.776025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.193 3.807 4 H 0.090 0.910 5 N -0.749 5.749 6 C 0.702 3.298 7 O -0.581 6.581 8 N -0.623 5.623 9 C 0.115 3.885 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.028 0.972 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.878 5.878 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.130 3.870 23 C -0.175 4.175 24 C -0.174 4.174 25 C -0.178 4.178 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.389 0.611 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.262 0.738 39 H 0.037 0.963 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -16.486 0.149 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.087 3.913 4 H 0.108 0.892 5 N -0.407 5.407 6 C 0.404 3.596 7 O -0.459 6.459 8 N -0.360 5.360 9 C -0.009 4.009 10 C -0.171 4.171 11 C -0.147 4.147 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C 0.010 3.990 23 C -0.195 4.195 24 C -0.211 4.211 25 C -0.214 4.214 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.225 0.775 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.767 -15.904 -0.791 16.022 hybrid contribution -0.008 0.670 0.570 0.880 sum -1.775 -15.234 -0.222 15.339 Atomic orbital electron populations 1.21756 0.95454 1.01172 1.02449 1.21756 0.96245 0.95713 1.02611 1.20246 0.91462 0.92168 0.87450 0.89219 1.45422 1.76119 1.05959 1.13243 1.15934 0.77930 0.81392 0.84299 1.90877 1.58077 1.64021 1.32893 1.47812 1.73546 1.08998 1.05599 1.21485 0.99007 0.93824 0.86582 1.21944 0.99344 0.98807 0.97035 1.21612 1.00407 0.92270 1.00446 1.18982 0.95360 0.94365 0.89210 0.95375 1.21114 1.46920 0.90405 0.97521 0.92401 1.25044 0.94836 0.98769 0.95323 1.69900 1.45170 1.34616 1.01886 0.86563 0.77685 0.85788 0.78126 1.19831 1.21056 1.20989 1.22172 0.98406 0.73005 1.05458 1.22798 0.94448 0.99272 1.02961 1.22848 1.00545 1.04431 0.93275 1.23282 1.02394 0.95667 1.00104 0.92559 0.92917 0.92551 0.90711 0.91640 0.77502 0.92221 0.92252 0.92219 0.92445 0.93139 0.93258 0.92755 0.94472 0.85931 0.88029 0.88759 0.89914 0.89890 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.80 37.16 0.36 -1.06 16 2 C -0.13 -1.20 5.45 -26.73 -0.15 -1.35 16 3 C 0.19 2.57 2.45 -67.93 -0.17 2.40 16 4 H 0.09 1.42 7.51 -51.92 -0.39 1.03 16 5 N -0.75 -11.01 2.98 -58.67 -0.17 -11.19 16 6 C 0.70 13.95 6.96 -86.92 -0.61 13.35 16 7 O -0.58 -14.06 13.17 5.28 0.07 -13.99 16 8 N -0.62 -12.40 2.97 -178.44 -0.53 -12.93 16 9 C 0.12 1.77 6.43 -3.71 -0.02 1.75 16 10 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 12 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.52 -14.15 8.56 -34.44 -0.29 -14.45 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.69 11.40 55.43 0.63 -25.06 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 3.17 5.39 -3.67 -0.02 3.15 16 23 C -0.18 -2.37 5.71 -90.63 -0.52 -2.89 16 24 C -0.17 -2.56 9.74 -26.71 -0.26 -2.82 16 25 C -0.18 -2.99 9.84 -26.71 -0.26 -3.26 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.39 4.79 6.06 -40.82 -0.25 4.54 16 32 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.12 3.50 5.16 -51.93 -0.27 3.23 16 41 H 0.10 1.16 8.11 -51.93 -0.42 0.74 16 42 H 0.09 1.52 6.66 -51.93 -0.35 1.17 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.12 2.63 5.26 -51.93 -0.27 2.35 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -30.61 344.43 -10.04 -40.65 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.67 Total: 8.29 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.53 Total: -7.33 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.07 Total: -49.17 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.07 Total: -13.99 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.61 -10.04 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595783392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.133 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds