Wall clock time and date at job start Tue Mar 31 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47606 * 2 1 4 4 H 1.09008 * 109.46977 * 305.00442 * 3 2 1 5 5 N 1.46500 * 109.47030 * 64.99712 * 3 2 1 6 6 C 1.34771 * 120.00352 * 205.00067 * 5 3 2 7 7 O 1.21594 * 119.99838 * 5.38834 * 6 5 3 8 8 N 1.34776 * 120.00424 * 185.39542 * 6 5 3 9 9 C 1.46925 * 120.62539 * 354.96531 * 8 6 5 10 10 C 1.53196 * 108.77218 * 126.42225 * 9 8 6 11 11 C 1.53035 * 109.31390 * 54.63293 * 10 9 8 12 12 C 1.53045 * 109.53921 * 298.63550 * 11 10 9 13 13 H 1.08996 * 109.49474 * 301.41376 * 12 11 10 14 14 C 1.50703 * 109.49768 * 181.34762 * 12 11 10 15 15 H 1.07999 * 119.99926 * 0.06984 * 14 12 11 16 16 C 1.37878 * 119.99922 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00007 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00037 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47162 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47163 * 120.00238 * 18 16 14 21 21 H 1.48497 * 109.47187 * 240.00105 * 18 16 14 22 22 C 1.46996 * 120.61718 * 174.99994 * 8 6 5 23 23 C 1.52999 * 109.47429 * 185.00333 * 3 2 1 24 24 C 1.52995 * 117.49739 * 248.62384 * 23 3 2 25 25 C 1.52993 * 117.50039 * 179.97438 * 23 3 2 26 26 H 1.08997 * 109.47296 * 59.99573 * 1 2 3 27 27 H 1.08998 * 109.47571 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46652 * 300.00076 * 1 2 3 29 29 H 1.09003 * 109.46652 * 239.99924 * 2 1 3 30 30 H 1.08997 * 109.47296 * 120.00427 * 2 1 3 31 31 H 0.97001 * 120.00110 * 25.00842 * 5 3 2 32 32 H 1.09002 * 109.59209 * 6.63464 * 9 8 6 33 33 H 1.09003 * 109.58976 * 246.20241 * 9 8 6 34 34 H 1.09001 * 109.49709 * 294.68292 * 10 9 8 35 35 H 1.09001 * 109.49721 * 174.58492 * 10 9 8 36 36 H 1.09006 * 109.46118 * 178.61894 * 11 10 9 37 37 H 1.08997 * 109.44866 * 58.64826 * 11 10 9 38 38 H 0.96996 * 119.99724 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.58538 * 113.79894 * 22 8 6 40 40 H 1.09001 * 109.62747 * 353.34596 * 22 8 6 41 41 H 1.09003 * 115.54689 * 34.33138 * 23 3 2 42 42 H 1.08997 * 117.49789 * 359.97438 * 24 23 3 43 43 H 1.08995 * 117.49797 * 145.02192 * 24 23 3 44 44 H 1.08997 * 117.49906 * 214.98417 * 25 23 3 45 45 H 1.09002 * 117.49707 * 359.97100 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 1.5258 3.4383 1.2996 7 8 1.6367 4.0961 0.2830 8 7 1.2763 4.0502 2.4742 9 6 1.0308 3.2636 3.6907 10 6 1.9910 3.7374 4.7863 11 6 1.8391 5.2486 4.9737 12 6 2.2017 5.9650 3.6707 13 1 3.2249 5.7147 3.3906 14 6 2.0837 7.4546 3.8660 15 1 1.7815 7.8514 4.8240 16 6 2.3624 8.3110 2.8220 17 7 2.7308 7.8279 1.6556 18 14 2.2169 10.1575 3.0643 19 1 1.7891 10.4417 4.4577 20 1 3.5339 10.7952 2.8115 21 1 1.2125 10.7034 2.1165 22 6 1.2439 5.5172 2.5622 23 6 3.5649 1.4442 -0.1258 24 6 4.3734 1.9028 1.0894 25 6 4.2706 2.8016 -0.1450 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4872 1.5661 2.0463 32 1 1.2044 2.2075 3.4842 33 1 0.0016 3.4096 4.0188 34 1 3.0162 3.5081 4.4956 35 1 1.7551 3.2293 5.7214 36 1 2.5037 5.5845 5.7698 37 1 0.8077 5.4794 5.2400 38 1 2.9265 8.4303 0.9211 39 1 0.2321 5.8468 2.7982 40 1 1.5584 5.9480 1.6116 41 1 3.9868 0.6491 -0.7406 42 1 3.8191 2.2035 1.9784 43 1 5.3275 1.4093 1.2745 44 1 5.1570 2.8991 -0.7718 45 1 3.6485 3.6933 -0.0686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595783392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:36 Heat of formation + Delta-G solvation = -29.371476 kcal Electronic energy + Delta-G solvation = -23675.970906 eV Core-core repulsion = 20500.174626 eV Total energy + Delta-G solvation = -3175.796279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56170 -39.27974 -37.80709 -35.70214 -35.18243 -33.65784 -32.66072 -31.40753 -28.04494 -26.95297 -25.82491 -23.44811 -23.36531 -22.57372 -22.00674 -20.92119 -20.33807 -18.99000 -18.15933 -17.37393 -17.25589 -16.58823 -15.87692 -15.44620 -15.26753 -15.20266 -15.10939 -14.60861 -14.40998 -14.25489 -13.93737 -13.59549 -13.47222 -13.25042 -12.91553 -12.65602 -12.55131 -12.28637 -12.22161 -12.19328 -12.16613 -11.87018 -11.75513 -11.61844 -11.25294 -11.06942 -10.94074 -10.78074 -10.77214 -10.51523 -9.96661 -9.22291 -8.09764 -6.26920 1.39049 1.40708 1.52696 1.84205 2.34747 2.41982 2.91140 3.10868 3.21377 3.68970 3.98606 4.05708 4.13186 4.17285 4.25861 4.28268 4.32321 4.41724 4.60548 4.63901 4.75674 4.79356 4.81836 4.83786 4.87882 4.96916 5.06776 5.11240 5.15818 5.20285 5.26076 5.27781 5.31798 5.36709 5.41361 5.46817 5.57665 5.68658 5.75553 5.91386 6.00329 6.22441 6.38229 6.86503 7.22067 7.43136 7.79202 8.93399 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.005211 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.150622 B = 5372.042860 C = 5819.776025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.059 0.941 5 N -0.725 5.725 6 C 0.697 3.303 7 O -0.633 6.633 8 N -0.629 5.629 9 C 0.110 3.890 10 C -0.124 4.124 11 C -0.105 4.105 12 C 0.041 3.959 13 H -0.016 1.016 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.914 5.914 18 Si 0.956 3.044 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.146 3.854 23 C -0.147 4.147 24 C -0.164 4.164 25 C -0.216 4.216 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.405 0.595 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.258 0.742 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -19.643 1.913 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.081 3.919 4 H 0.077 0.923 5 N -0.384 5.384 6 C 0.399 3.601 7 O -0.514 6.514 8 N -0.365 5.365 9 C -0.012 4.012 10 C -0.162 4.162 11 C -0.143 4.143 12 C 0.021 3.979 13 H 0.002 0.998 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.189 4.189 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.023 3.977 23 C -0.167 4.167 24 C -0.201 4.201 25 C -0.253 4.253 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.244 0.756 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.155 0.845 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.247 -19.126 1.025 19.285 hybrid contribution 0.147 1.651 0.000 1.657 sum -2.101 -17.475 1.025 17.630 Atomic orbital electron populations 1.21762 0.95408 1.02323 1.01360 1.21721 0.96149 0.92460 1.04715 1.20469 0.91530 0.94272 0.85636 0.92308 1.45185 1.74753 1.03888 1.14576 1.16150 0.77611 0.82831 0.83494 1.90851 1.60041 1.65633 1.34899 1.47686 1.73711 1.07653 1.07469 1.21838 0.99883 0.95172 0.84324 1.21893 0.99057 0.95947 0.99322 1.21503 1.00575 0.94888 0.97294 1.18887 0.92955 0.94019 0.91992 0.99767 1.21561 1.46230 0.92151 0.97497 0.92033 1.25889 0.94621 1.03457 0.94976 1.70111 1.46487 1.35927 1.02705 0.85531 0.77522 0.80216 0.78560 1.18343 1.20887 1.20923 1.21524 0.97300 0.76047 1.02819 1.22951 0.94259 0.97438 1.02009 1.22865 1.01788 1.03257 0.92174 1.23108 1.03205 0.95744 1.03216 0.94021 0.90583 0.93398 0.88577 0.89420 0.75586 0.88241 0.90526 0.93201 0.87839 0.93115 0.92554 0.93282 0.95325 0.90775 0.84483 0.90314 0.87364 0.88988 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.80 71.98 0.71 -1.72 16 2 C -0.11 -1.74 5.45 30.59 0.17 -1.57 16 3 C 0.19 4.74 2.45 44.99 0.11 4.85 16 4 H 0.06 1.91 7.51 -2.38 -0.02 1.89 16 5 N -0.72 -20.65 2.98 -457.81 -1.37 -22.02 16 6 C 0.70 28.68 6.96 179.06 1.25 29.93 16 7 O -0.63 -33.06 13.17 -4.01 -0.05 -33.12 16 8 N -0.63 -25.53 2.97 -836.71 -2.49 -28.02 16 9 C 0.11 3.10 6.43 86.36 0.56 3.66 16 10 C -0.12 -3.62 6.08 30.67 0.19 -3.44 16 11 C -0.10 -4.08 5.11 30.62 0.16 -3.93 16 12 C 0.04 2.10 2.25 -11.46 -0.03 2.07 16 13 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 14 C -0.54 -30.07 8.56 25.60 0.22 -29.85 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.01 0.57 5.30 84.65 0.45 1.02 16 17 N -0.91 -56.86 11.40 21.45 0.24 -56.61 16 18 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 C 0.15 7.50 5.39 86.35 0.47 7.97 16 23 C -0.15 -3.74 5.71 -10.80 -0.06 -3.80 16 24 C -0.16 -4.61 9.74 30.61 0.30 -4.32 16 25 C -0.22 -7.55 9.84 30.61 0.30 -7.25 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.41 8.77 6.06 -92.71 -0.56 8.20 16 32 H 0.10 2.01 5.57 -2.39 -0.01 1.99 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 4.58 5.16 -2.39 -0.01 4.57 16 41 H 0.14 2.57 8.11 -2.39 -0.02 2.55 16 42 H 0.08 2.47 6.66 -2.39 -0.02 2.45 16 43 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 45 H 0.07 3.27 5.26 -2.39 -0.01 3.26 16 Total: -1.00 -75.27 344.43 3.54 -71.73 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.40 Total: 27.24 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 4.77 Total: -6.38 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.61 Total: -106.65 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.05 Total: -33.12 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.27 3.54 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595783392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.355 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds