Wall clock time and date at job start Tue Mar 31 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99490 * 2 1 4 4 C 1.53005 * 109.46923 * 125.00214 * 3 2 1 5 5 H 1.09003 * 109.49807 * 55.06357 * 4 3 2 6 6 C 1.53046 * 109.49463 * 294.99907 * 4 3 2 7 7 C 1.53046 * 109.53579 * 178.68106 * 6 4 3 8 8 C 1.53193 * 109.31028 * 61.36644 * 7 6 4 9 9 N 1.46927 * 108.77663 * 305.36644 * 8 7 6 10 10 C 1.34774 * 120.62692 * 233.59122 * 9 8 7 11 11 O 1.21281 * 120.00056 * 180.02562 * 10 9 8 12 12 C 1.50698 * 120.00254 * 0.02562 * 10 9 8 13 13 H 1.08994 * 109.47267 * 40.00802 * 12 10 9 14 14 N 1.46902 * 109.47182 * 160.00577 * 12 10 9 15 15 C 1.53002 * 109.47484 * 280.00232 * 12 10 9 16 16 C 1.52997 * 109.47152 * 174.99558 * 15 12 10 17 17 C 1.50701 * 109.47123 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00103 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99863 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47554 * 119.99932 * 21 19 17 24 24 H 1.48501 * 109.47161 * 239.99632 * 21 19 17 25 25 C 1.46919 * 118.74179 * 53.60344 * 9 8 7 26 26 H 1.07998 * 120.00551 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00389 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47534 * 5.00500 * 3 2 1 30 30 H 1.08995 * 109.47412 * 245.00193 * 3 2 1 31 31 H 1.08993 * 109.45866 * 298.70281 * 6 4 3 32 32 H 1.09000 * 109.45949 * 58.66617 * 6 4 3 33 33 H 1.09001 * 109.49347 * 181.31682 * 7 6 4 34 34 H 1.08998 * 109.49687 * 301.41384 * 7 6 4 35 35 H 1.09000 * 109.58615 * 185.57833 * 8 7 6 36 36 H 1.08998 * 109.58446 * 65.14816 * 8 7 6 37 37 H 1.00897 * 111.00238 * 59.99975 * 14 12 10 38 38 H 1.00897 * 111.00252 * 183.96105 * 14 12 10 39 39 H 1.08996 * 109.47320 * 295.00107 * 15 12 10 40 40 H 1.09008 * 109.46345 * 55.00075 * 15 12 10 41 41 H 1.08996 * 109.47456 * 300.00465 * 16 15 12 42 42 H 1.09000 * 109.46733 * 60.00906 * 16 15 12 43 43 H 0.97001 * 119.99882 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.59216 * 186.60571 * 25 9 8 45 45 H 1.09004 * 109.70105 * 66.25262 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6837 0.4582 1.1401 6 6 2.2453 1.3219 2.4926 7 6 3.2167 1.3167 3.6752 8 6 4.0698 2.5884 3.6356 9 7 4.7198 2.6812 2.3212 10 6 6.0554 2.8335 2.2249 11 8 6.5800 2.9093 1.1341 12 6 6.8971 2.9096 3.4726 13 1 6.5272 2.1918 4.2047 14 7 8.2934 2.5957 3.1413 15 6 6.8167 4.3214 4.0568 16 6 7.5684 4.3658 5.3886 17 6 7.4887 5.7562 5.9644 18 1 6.9548 6.5307 5.4336 19 6 8.0973 6.0397 7.1686 20 7 8.7470 5.0966 7.8151 21 14 7.9978 7.7630 7.8825 22 1 7.2154 8.6332 6.9683 23 1 7.3316 7.7118 9.2088 24 1 9.3679 8.3143 8.0379 25 6 3.8860 2.6051 1.1139 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6211 1.4028 -0.9313 31 1 1.6148 2.2095 2.5444 32 1 1.6202 0.4298 2.5322 33 1 2.6538 1.2850 4.6081 34 1 3.8640 0.4421 3.6104 35 1 4.8291 2.5435 4.4164 36 1 3.4339 3.4599 3.7911 37 1 8.6596 3.2475 2.4638 38 1 8.8665 2.5767 3.9715 39 1 7.2679 5.0288 3.3611 40 1 5.7724 4.5880 4.2200 41 1 7.1172 3.6584 6.0844 42 1 8.6126 4.0992 5.2254 43 1 9.1748 5.2960 8.6626 44 1 4.5240 2.5712 0.2307 45 1 3.2352 3.4779 1.0612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595936387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:02 Heat of formation + Delta-G solvation = -43.683301 kcal Electronic energy + Delta-G solvation = -22403.247433 eV Core-core repulsion = 19226.830546 eV Total energy + Delta-G solvation = -3176.416887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25622 -38.01858 -35.52574 -35.36379 -32.87474 -32.44344 -31.48683 -29.88626 -27.32720 -26.23139 -25.25893 -23.38758 -22.45430 -20.85721 -20.08366 -20.00331 -18.66850 -17.43329 -16.32947 -15.86683 -15.47193 -15.16994 -14.81272 -14.54718 -14.44036 -14.28251 -13.95150 -13.67307 -13.45651 -13.20986 -12.90277 -12.64113 -12.43519 -12.11885 -11.94098 -11.67818 -11.37838 -11.22173 -11.07888 -10.96619 -10.96024 -10.74679 -10.65336 -10.57435 -9.98971 -9.86665 -9.54900 -9.25607 -9.15021 -8.52337 -8.45077 -8.16526 -6.09443 -4.12409 2.01774 2.94528 3.10926 3.25458 3.33634 3.37567 4.38576 4.46727 4.48438 4.68215 4.83581 4.84804 4.93818 5.10209 5.18661 5.21939 5.27002 5.30369 5.35939 5.44182 5.52671 5.60503 5.65501 5.69035 5.71996 5.76967 5.83150 5.90842 5.97311 6.03747 6.24076 6.28983 6.36425 6.50708 6.52109 6.63596 6.86995 7.41900 7.51316 7.59969 7.66644 7.87855 7.92251 8.30557 8.46994 8.93784 9.52627 11.01500 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.003407 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.849098 B = 8216.432429 C = 8690.424625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.089 4.089 4 C -0.097 4.097 5 H 0.075 0.925 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.102 3.898 9 N -0.614 5.614 10 C 0.528 3.472 11 O -0.541 6.541 12 C 0.074 3.926 13 H 0.097 0.903 14 N -0.831 5.831 15 C -0.138 4.138 16 C 0.025 3.975 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.116 3.884 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.345 0.655 38 H 0.354 0.646 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.090 0.910 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.005 -9.342 -11.265 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.163 4.163 3 C -0.127 4.127 4 C -0.116 4.116 5 H 0.094 0.906 6 C -0.150 4.150 7 C -0.174 4.174 8 C -0.020 4.020 9 N -0.348 5.348 10 C 0.317 3.683 11 O -0.417 6.417 12 C -0.041 4.041 13 H 0.115 0.885 14 N -0.363 5.363 15 C -0.178 4.178 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.006 4.006 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.876 -10.021 -11.958 21.557 hybrid contribution 0.060 1.842 1.017 2.105 sum -14.816 -8.179 -10.941 20.152 Atomic orbital electron populations 1.23823 0.95936 1.01701 1.02180 1.22928 0.95961 0.98474 0.98924 1.20770 0.97993 0.95563 0.98376 1.21490 0.96513 0.98848 0.94737 0.90615 1.21581 0.97518 1.02213 0.93677 1.21943 0.98300 0.98360 0.98837 1.21866 0.97450 0.97853 0.84880 1.48038 1.06392 1.73464 1.06933 1.20884 0.81549 0.74416 0.91450 1.90612 1.71838 1.49892 1.29371 1.21513 0.90380 0.99083 0.93139 0.88541 1.58753 1.01667 1.58080 1.17813 1.22400 1.01901 0.93108 1.00378 1.19101 0.95061 0.97461 0.89623 1.21214 1.33754 0.95858 1.05228 0.92683 1.25011 0.95193 0.97122 0.97002 1.69957 1.34933 1.32512 1.15797 0.86537 0.77847 0.84629 0.79013 1.19757 1.20937 1.20953 1.21548 0.93397 0.96722 0.88974 0.88673 0.88721 0.87506 0.91262 0.90664 0.91848 0.91607 0.90534 0.91431 0.88676 0.91175 0.84166 0.83115 0.92707 0.92455 0.96363 0.96408 0.92936 0.89162 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 14.32 29.01 0.42 -0.99 16 2 C -0.14 -1.11 8.48 -36.02 -0.31 -1.41 16 3 C -0.09 -0.71 5.14 -27.88 -0.14 -0.86 16 4 C -0.10 -0.92 2.33 -90.50 -0.21 -1.13 16 5 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.11 -0.99 5.00 -26.68 -0.13 -1.13 16 7 C -0.14 -1.32 6.08 -26.61 -0.16 -1.48 16 8 C 0.10 1.22 5.58 -3.71 -0.02 1.20 16 9 N -0.61 -8.56 2.97 -172.78 -0.51 -9.08 16 10 C 0.53 9.16 6.95 -10.99 -0.08 9.08 16 11 O -0.54 -10.91 15.66 5.56 0.09 -10.82 16 12 C 0.07 1.29 2.35 -68.86 -0.16 1.13 16 13 H 0.10 1.60 6.54 -51.93 -0.34 1.26 16 14 N -0.83 -14.72 8.94 -5.65 -0.05 -14.77 16 15 C -0.14 -2.74 4.55 -26.73 -0.12 -2.86 16 16 C 0.02 0.60 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C 0.12 1.38 5.72 -3.72 -0.02 1.36 16 26 H 0.09 0.63 7.84 -52.49 -0.41 0.22 16 27 H 0.09 0.59 8.06 -52.48 -0.42 0.16 16 28 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.55 7.34 -51.93 -0.38 0.17 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.23 5.18 -51.93 -0.27 0.96 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.35 6.20 8.58 -39.29 -0.34 5.86 16 38 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.09 7.20 -51.92 -0.37 0.72 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 1.21 7.01 -51.93 -0.36 0.85 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -30.74 354.86 -8.62 -39.37 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.73 Total: 8.63 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.48 Total: -9.68 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.17 Total: -49.02 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.74 -8.62 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595936387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.316 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds