Wall clock time and date at job start Tue Mar 31 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99490 * 2 1 4 4 C 1.53005 * 109.46923 * 125.00214 * 3 2 1 5 5 H 1.09003 * 109.49807 * 55.06357 * 4 3 2 6 6 C 1.53046 * 109.49463 * 294.99907 * 4 3 2 7 7 C 1.53046 * 109.53579 * 178.68106 * 6 4 3 8 8 C 1.53193 * 109.31028 * 61.36644 * 7 6 4 9 9 N 1.46927 * 108.77663 * 305.36644 * 8 7 6 10 10 C 1.34774 * 120.62692 * 233.59122 * 9 8 7 11 11 O 1.21281 * 120.00056 * 180.02562 * 10 9 8 12 12 C 1.50698 * 120.00254 * 0.02562 * 10 9 8 13 13 H 1.08994 * 109.47267 * 40.00802 * 12 10 9 14 14 N 1.46902 * 109.47182 * 160.00577 * 12 10 9 15 15 C 1.53002 * 109.47484 * 280.00232 * 12 10 9 16 16 C 1.52997 * 109.47152 * 174.99558 * 15 12 10 17 17 C 1.50701 * 109.47123 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00103 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99863 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47309 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47554 * 119.99932 * 21 19 17 24 24 H 1.48501 * 109.47161 * 239.99632 * 21 19 17 25 25 C 1.46919 * 118.74179 * 53.60344 * 9 8 7 26 26 H 1.07998 * 120.00551 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99656 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00389 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47534 * 5.00500 * 3 2 1 30 30 H 1.08995 * 109.47412 * 245.00193 * 3 2 1 31 31 H 1.08993 * 109.45866 * 298.70281 * 6 4 3 32 32 H 1.09000 * 109.45949 * 58.66617 * 6 4 3 33 33 H 1.09001 * 109.49347 * 181.31682 * 7 6 4 34 34 H 1.08998 * 109.49687 * 301.41384 * 7 6 4 35 35 H 1.09000 * 109.58615 * 185.57833 * 8 7 6 36 36 H 1.08998 * 109.58446 * 65.14816 * 8 7 6 37 37 H 1.00897 * 111.00238 * 59.99975 * 14 12 10 38 38 H 1.00897 * 111.00252 * 183.96105 * 14 12 10 39 39 H 1.08996 * 109.47320 * 295.00107 * 15 12 10 40 40 H 1.09008 * 109.46345 * 55.00075 * 15 12 10 41 41 H 1.08996 * 109.47456 * 300.00465 * 16 15 12 42 42 H 1.09000 * 109.46733 * 60.00906 * 16 15 12 43 43 H 0.97001 * 119.99882 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.59216 * 186.60571 * 25 9 8 45 45 H 1.09004 * 109.70105 * 66.25262 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6837 0.4582 1.1401 6 6 2.2453 1.3219 2.4926 7 6 3.2167 1.3167 3.6752 8 6 4.0698 2.5884 3.6356 9 7 4.7198 2.6812 2.3212 10 6 6.0554 2.8335 2.2249 11 8 6.5800 2.9093 1.1341 12 6 6.8971 2.9096 3.4726 13 1 6.5272 2.1918 4.2047 14 7 8.2934 2.5957 3.1413 15 6 6.8167 4.3214 4.0568 16 6 7.5684 4.3658 5.3886 17 6 7.4887 5.7562 5.9644 18 1 6.9548 6.5307 5.4336 19 6 8.0973 6.0397 7.1686 20 7 8.7470 5.0966 7.8151 21 14 7.9978 7.7630 7.8825 22 1 7.2154 8.6332 6.9683 23 1 7.3316 7.7118 9.2088 24 1 9.3679 8.3143 8.0379 25 6 3.8860 2.6051 1.1139 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6211 1.4028 -0.9313 31 1 1.6148 2.2095 2.5444 32 1 1.6202 0.4298 2.5322 33 1 2.6538 1.2850 4.6081 34 1 3.8640 0.4421 3.6104 35 1 4.8291 2.5435 4.4164 36 1 3.4339 3.4599 3.7911 37 1 8.6596 3.2475 2.4638 38 1 8.8665 2.5767 3.9715 39 1 7.2679 5.0288 3.3611 40 1 5.7724 4.5880 4.2200 41 1 7.1172 3.6584 6.0844 42 1 8.6126 4.0992 5.2254 43 1 9.1748 5.2960 8.6626 44 1 4.5240 2.5712 0.2307 45 1 3.2352 3.4779 1.0612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595936387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:02 Heat of formation + Delta-G solvation = -62.513690 kcal Electronic energy + Delta-G solvation = -22404.063980 eV Core-core repulsion = 19226.830546 eV Total energy + Delta-G solvation = -3177.233434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45792 -39.06702 -37.12581 -36.21047 -34.85501 -33.35720 -32.32273 -31.70228 -28.65757 -27.19479 -26.68182 -24.92502 -23.31450 -22.39120 -21.13570 -20.69763 -19.85548 -18.84374 -18.25095 -17.12901 -16.53934 -16.30944 -15.99974 -15.94740 -15.67875 -15.34034 -15.18361 -14.89904 -14.55736 -14.38548 -14.12763 -13.89708 -13.74625 -13.49853 -13.24850 -12.93791 -12.68057 -12.63877 -12.50157 -12.09012 -11.96886 -11.81392 -11.74131 -11.71037 -11.59837 -11.37382 -11.28215 -10.66002 -10.56527 -10.11543 -9.71149 -9.59759 -8.21600 -6.31830 1.38668 1.40453 1.45077 1.52021 1.58006 1.96249 2.39935 3.12161 3.45546 3.69534 3.76597 3.79674 3.93087 4.02494 4.09100 4.20983 4.26305 4.33806 4.43150 4.49512 4.57041 4.63944 4.68332 4.79056 4.79565 4.87649 4.91962 5.02050 5.06571 5.06763 5.17058 5.20568 5.28562 5.46283 5.47852 5.56092 5.64301 5.80098 5.82347 5.94851 6.04083 6.20845 6.36393 6.45508 6.83392 7.14589 7.37353 8.89407 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.003407 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.849098 B = 8216.432429 C = 8690.424625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.084 4.084 4 C -0.088 4.088 5 H 0.061 0.939 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.096 3.904 9 N -0.607 5.607 10 C 0.524 3.476 11 O -0.576 6.576 12 C 0.081 3.919 13 H 0.107 0.893 14 N -0.831 5.831 15 C -0.119 4.119 16 C 0.032 3.968 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.281 1.281 25 C 0.113 3.887 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.343 0.657 38 H 0.353 0.647 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.004 0.996 42 H 0.001 0.999 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.153 -9.054 -11.184 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.122 4.122 4 C -0.107 4.107 5 H 0.080 0.920 6 C -0.144 4.144 7 C -0.169 4.169 8 C -0.026 4.026 9 N -0.339 5.339 10 C 0.313 3.687 11 O -0.455 6.455 12 C -0.034 4.034 13 H 0.125 0.875 14 N -0.362 5.362 15 C -0.159 4.159 16 C -0.005 4.005 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.206 1.206 25 C -0.009 4.009 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.022 0.978 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.068 -9.743 -11.873 22.961 hybrid contribution 0.687 1.722 0.986 2.100 sum -16.380 -8.021 -10.887 21.241 Atomic orbital electron populations 1.23978 0.95724 1.02470 1.00772 1.22909 0.96256 0.98184 1.00187 1.20712 0.97729 0.96283 0.97433 1.21394 0.96348 0.96759 0.96196 0.92028 1.21559 0.97233 1.03208 0.92446 1.21921 0.98136 0.96569 1.00274 1.22062 0.97486 0.99747 0.83349 1.48114 1.05521 1.71684 1.08603 1.20763 0.82698 0.74664 0.90579 1.90594 1.72788 1.51888 1.30221 1.21428 0.90522 0.97761 0.93714 0.87523 1.58765 1.01877 1.57918 1.17662 1.22131 1.01480 0.94460 0.97843 1.18951 0.94521 0.95759 0.91283 1.21620 1.33677 0.97143 1.05623 0.92784 1.25853 0.94817 1.01121 0.97477 1.70064 1.35730 1.34564 1.16277 0.85493 0.77930 0.79810 0.78384 1.19010 1.20164 1.20642 1.21726 0.93172 0.98736 0.87308 0.88048 0.87855 0.87592 0.90314 0.90965 0.90866 0.90506 0.88666 0.92205 0.89844 0.89929 0.84362 0.83228 0.93934 0.91562 0.97809 0.98041 0.92716 0.91047 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 14.32 67.78 0.97 -1.27 16 2 C -0.16 -2.11 8.48 25.65 0.22 -1.89 16 3 C -0.08 -1.19 5.14 29.85 0.15 -1.04 16 4 C -0.09 -1.54 2.33 -10.71 -0.02 -1.57 16 5 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 6 C -0.11 -1.61 5.00 30.63 0.15 -1.46 16 7 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 8 C 0.10 2.13 5.58 86.36 0.48 2.62 16 9 N -0.61 -16.44 2.97 -818.93 -2.43 -18.88 16 10 C 0.52 18.19 6.95 87.66 0.61 18.80 16 11 O -0.58 -23.52 15.66 -3.03 -0.05 -23.57 16 12 C 0.08 2.84 2.35 44.17 0.10 2.94 16 13 H 0.11 3.53 6.54 -2.39 -0.02 3.51 16 14 N -0.83 -29.92 8.94 -171.80 -1.54 -31.46 16 15 C -0.12 -4.74 4.55 30.59 0.14 -4.61 16 16 C 0.03 1.57 4.74 29.85 0.14 1.71 16 17 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C 0.01 0.32 5.46 84.66 0.46 0.78 16 20 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 21 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.11 2.57 5.72 86.36 0.49 3.06 16 26 H 0.10 1.05 7.84 -2.91 -0.02 1.03 16 27 H 0.10 1.02 8.06 -2.91 -0.02 1.00 16 28 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.04 7.34 -2.39 -0.02 1.03 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 2.07 5.18 -2.39 -0.01 2.06 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.34 12.61 8.58 -89.70 -0.77 11.85 16 38 H 0.35 12.70 7.55 -89.70 -0.68 12.03 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.49 7.20 -2.38 -0.02 2.47 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.07 1.93 7.01 -2.39 -0.02 1.91 16 45 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -65.28 354.86 2.14 -63.14 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.48 Total: 32.81 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.32 Total: -13.48 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -3.68 Total: -104.13 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.28 2.14 -63.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595936387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.627 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds