Wall clock time and date at job start Tue Mar 31 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00127 * 2 1 4 4 C 1.53002 * 109.46894 * 125.00134 * 3 2 1 5 5 H 1.08999 * 109.52286 * 305.08433 * 4 3 2 6 6 C 1.53040 * 109.49629 * 65.16532 * 4 3 2 7 7 C 1.53039 * 109.53707 * 181.31613 * 6 4 3 8 8 C 1.53631 * 109.24198 * 298.50965 * 7 6 4 9 9 N 1.46921 * 108.54033 * 54.85298 * 8 7 6 10 10 C 1.34779 * 120.62588 * 126.37020 * 9 8 7 11 11 O 1.21287 * 120.00160 * 179.72105 * 10 9 8 12 12 C 1.50698 * 120.00151 * 359.72062 * 10 9 8 13 13 H 1.09006 * 109.47280 * 39.99963 * 12 10 9 14 14 N 1.46901 * 109.47246 * 159.99938 * 12 10 9 15 15 C 1.52996 * 109.47281 * 279.99916 * 12 10 9 16 16 C 1.53002 * 109.47346 * 174.99629 * 15 12 10 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.46922 * 118.74430 * 306.09742 * 9 8 7 26 26 H 1.08002 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00174 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00029 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47072 * 5.00461 * 3 2 1 30 30 H 1.08999 * 109.47266 * 245.00235 * 3 2 1 31 31 H 1.09006 * 109.45877 * 301.33432 * 6 4 3 32 32 H 1.08995 * 109.46257 * 61.29252 * 6 4 3 33 33 H 1.09001 * 109.49909 * 58.58698 * 7 6 4 34 34 H 1.09000 * 109.49743 * 178.65026 * 7 6 4 35 35 H 1.09006 * 109.73528 * 295.11976 * 8 7 6 36 36 H 1.08996 * 109.66275 * 174.55209 * 8 7 6 37 37 H 1.00903 * 110.99982 * 296.04149 * 14 12 10 38 38 H 1.00900 * 111.00110 * 60.00327 * 14 12 10 39 39 H 1.09004 * 109.47368 * 54.99817 * 15 12 10 40 40 H 1.08996 * 109.47261 * 295.00202 * 15 12 10 41 41 H 1.09000 * 109.46986 * 60.00254 * 16 15 12 42 42 H 1.08993 * 109.47662 * 300.00031 * 16 15 12 43 43 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58843 * 173.64958 * 25 9 8 45 45 H 1.08997 * 109.58487 * 293.92849 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4894 1.1454 2.1064 6 6 4.1029 0.2534 0.9906 7 6 5.0560 0.2586 2.1879 8 6 5.7576 1.6229 2.2705 9 7 4.7319 2.6740 2.3115 10 6 4.7314 3.5948 3.2957 11 8 3.8823 4.4606 3.3157 12 6 5.7859 3.5487 4.3713 13 1 6.7476 3.2925 3.9267 14 7 5.8811 4.8631 5.0204 15 6 5.4074 2.4925 5.4115 16 6 6.5364 2.3574 6.4353 17 6 6.1633 1.3175 7.4603 18 1 5.2159 0.8040 7.3884 19 6 7.0315 1.0217 8.4897 20 7 6.7061 0.1139 9.3839 21 14 8.6698 1.9104 8.6145 22 1 9.7014 1.1553 7.8591 23 1 8.5375 3.2748 8.0432 24 1 9.0727 2.0079 10.0405 25 6 3.7105 2.7060 1.2559 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.6230 -0.7222 0.9127 32 1 4.6644 0.4554 0.0785 33 1 4.4913 0.0811 3.1032 34 1 5.8018 -0.5263 2.0626 35 1 6.3913 1.7645 1.3949 36 1 6.3645 1.6690 3.1747 37 1 6.1926 5.5669 4.3678 38 1 5.0015 5.1234 5.4406 39 1 5.2499 1.5345 4.9160 40 1 4.4911 2.7941 5.9188 41 1 6.6939 3.3154 6.9309 42 1 7.4528 2.0558 5.9281 43 1 7.3171 -0.0945 10.1080 44 1 2.9662 3.4671 1.4905 45 1 4.1802 2.9367 0.2998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595936389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:10 Heat of formation + Delta-G solvation = -39.668214 kcal Electronic energy + Delta-G solvation = -22620.420204 eV Core-core repulsion = 19444.177425 eV Total energy + Delta-G solvation = -3176.242779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42046 -38.13078 -35.52980 -35.31469 -32.77541 -32.56040 -31.46860 -30.48534 -27.43877 -26.24652 -25.48698 -23.09929 -22.45399 -20.80546 -20.18209 -19.71021 -18.77761 -17.34917 -16.71178 -16.12096 -15.61606 -15.50690 -15.11745 -14.64477 -14.36112 -14.16840 -14.05916 -13.65722 -13.40024 -13.09608 -12.95964 -12.70026 -12.54245 -12.36591 -11.85266 -11.64095 -11.52582 -11.29984 -10.98773 -10.96198 -10.85424 -10.77116 -10.50055 -10.29362 -9.91065 -9.74997 -9.59497 -9.55022 -9.10400 -8.63834 -8.49688 -8.36786 -5.99102 -3.96659 2.04146 2.70275 3.03554 3.35872 3.44079 3.52225 4.39556 4.51814 4.56606 4.62456 4.70106 4.83042 4.88847 4.96833 5.07015 5.15719 5.23586 5.29260 5.34668 5.37410 5.42759 5.52181 5.60387 5.68469 5.68780 5.69486 5.72727 5.87895 5.98827 6.03926 6.22708 6.32556 6.38187 6.45559 6.51446 6.55547 6.87594 7.25733 7.36108 7.45438 7.59709 7.67936 7.87020 8.23646 8.58458 9.05650 9.63968 11.14377 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.004050 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.471410 B = 6911.608683 C = 7575.767927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.087 4.087 4 C -0.098 4.098 5 H 0.077 0.923 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.101 3.899 9 N -0.610 5.610 10 C 0.486 3.514 11 O -0.555 6.555 12 C 0.074 3.926 13 H 0.098 0.902 14 N -0.811 5.811 15 C -0.088 4.088 16 C -0.004 4.004 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.066 3.934 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.279 1.279 23 H -0.260 1.260 24 H -0.290 1.290 25 C 0.114 3.886 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.335 0.665 38 H 0.349 0.651 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.088 0.912 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 1.700 -21.581 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.168 4.168 3 C -0.125 4.125 4 C -0.117 4.117 5 H 0.096 0.904 6 C -0.151 4.151 7 C -0.176 4.176 8 C -0.022 4.022 9 N -0.343 5.343 10 C 0.274 3.726 11 O -0.433 6.433 12 C -0.042 4.042 13 H 0.115 0.885 14 N -0.339 5.339 15 C -0.126 4.126 16 C -0.041 4.041 17 C -0.558 4.558 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.706 3.294 22 H -0.205 1.205 23 H -0.184 1.184 24 H -0.216 1.216 25 C -0.009 4.009 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.042 1.762 -20.905 21.576 hybrid contribution 0.085 0.433 -0.593 0.740 sum -4.957 2.195 -21.498 22.171 Atomic orbital electron populations 1.23863 0.96029 1.01802 1.01679 1.22954 0.95929 0.98535 0.99399 1.20739 0.97891 0.95627 0.98240 1.21497 0.95965 0.95189 0.99058 0.90431 1.21610 0.96523 0.98772 0.98191 1.22010 0.99373 0.96724 0.99448 1.21981 0.90127 0.86700 1.03370 1.48213 1.29852 1.29809 1.26470 1.22612 0.87228 0.80305 0.82496 1.90634 1.39708 1.36859 1.76072 1.21885 0.96215 0.93668 0.92425 0.88455 1.59053 1.36634 1.02729 1.35500 1.21501 1.01290 0.94506 0.95337 1.19485 0.92763 0.97918 0.93949 1.21171 1.05164 1.20633 1.08857 0.91338 1.25011 0.98295 0.94787 0.95387 1.69928 1.37014 1.32777 1.14849 0.86784 0.84189 0.81412 0.77033 1.20507 1.18394 1.21620 1.21585 0.91454 0.97498 0.90319 0.88674 0.88592 0.87254 0.91328 0.90870 0.91472 0.91912 0.90732 0.90365 0.91496 0.88419 0.85376 0.83644 0.92076 0.92257 0.94789 0.97414 0.92858 0.89324 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 14.32 29.01 0.42 -1.17 16 2 C -0.15 -1.24 9.03 -36.03 -0.33 -1.56 16 3 C -0.09 -0.71 5.14 -27.88 -0.14 -0.86 16 4 C -0.10 -0.96 2.33 -90.50 -0.21 -1.17 16 5 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 6 C -0.11 -1.00 5.00 -26.69 -0.13 -1.13 16 7 C -0.14 -1.41 6.10 -26.38 -0.16 -1.57 16 8 C 0.10 1.11 5.79 -3.49 -0.02 1.09 16 9 N -0.61 -7.88 2.97 -172.50 -0.51 -8.39 16 10 C 0.49 7.68 6.94 -10.99 -0.08 7.60 16 11 O -0.55 -10.22 15.66 5.55 0.09 -10.13 16 12 C 0.07 1.19 2.29 -68.87 -0.16 1.03 16 13 H 0.10 1.44 6.79 -51.93 -0.35 1.08 16 14 N -0.81 -13.04 8.44 -5.65 -0.05 -13.09 16 15 C -0.09 -1.71 4.45 -26.73 -0.12 -1.83 16 16 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 17 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 18 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 21 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C 0.11 1.28 5.71 -3.71 -0.02 1.26 16 26 H 0.09 0.73 7.84 -52.49 -0.41 0.32 16 27 H 0.10 0.69 8.06 -52.49 -0.42 0.26 16 28 H 0.11 0.84 6.94 -52.49 -0.36 0.47 16 29 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.55 6.68 -51.93 -0.35 0.21 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.18 4.85 -51.93 -0.25 0.93 16 37 H 0.33 4.64 9.06 -39.29 -0.36 4.29 16 38 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 39 H 0.06 1.14 6.99 -51.93 -0.36 0.77 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 42 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -32.48 351.80 -8.25 -40.73 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.69 Total: 7.48 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.49 Total: -11.77 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.21 Total: -48.80 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.48 -8.25 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595936389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.063 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds