Wall clock time and date at job start Tue Mar 31 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 120.00127 * 2 1 4 4 C 1.53002 * 109.46894 * 125.00134 * 3 2 1 5 5 H 1.08999 * 109.52286 * 305.08433 * 4 3 2 6 6 C 1.53040 * 109.49629 * 65.16532 * 4 3 2 7 7 C 1.53039 * 109.53707 * 181.31613 * 6 4 3 8 8 C 1.53631 * 109.24198 * 298.50965 * 7 6 4 9 9 N 1.46921 * 108.54033 * 54.85298 * 8 7 6 10 10 C 1.34779 * 120.62588 * 126.37020 * 9 8 7 11 11 O 1.21287 * 120.00160 * 179.72105 * 10 9 8 12 12 C 1.50698 * 120.00151 * 359.72062 * 10 9 8 13 13 H 1.09006 * 109.47280 * 39.99963 * 12 10 9 14 14 N 1.46901 * 109.47246 * 159.99938 * 12 10 9 15 15 C 1.52996 * 109.47281 * 279.99916 * 12 10 9 16 16 C 1.53002 * 109.47346 * 174.99629 * 15 12 10 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47326 * 270.00340 * 21 19 17 23 23 H 1.48506 * 109.46545 * 30.00090 * 21 19 17 24 24 H 1.48498 * 109.47210 * 149.99801 * 21 19 17 25 25 C 1.46922 * 118.74430 * 306.09742 * 9 8 7 26 26 H 1.08002 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00174 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00029 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47072 * 5.00461 * 3 2 1 30 30 H 1.08999 * 109.47266 * 245.00235 * 3 2 1 31 31 H 1.09006 * 109.45877 * 301.33432 * 6 4 3 32 32 H 1.08995 * 109.46257 * 61.29252 * 6 4 3 33 33 H 1.09001 * 109.49909 * 58.58698 * 7 6 4 34 34 H 1.09000 * 109.49743 * 178.65026 * 7 6 4 35 35 H 1.09006 * 109.73528 * 295.11976 * 8 7 6 36 36 H 1.08996 * 109.66275 * 174.55209 * 8 7 6 37 37 H 1.00903 * 110.99982 * 296.04149 * 14 12 10 38 38 H 1.00900 * 111.00110 * 60.00327 * 14 12 10 39 39 H 1.09004 * 109.47368 * 54.99817 * 15 12 10 40 40 H 1.08996 * 109.47261 * 295.00202 * 15 12 10 41 41 H 1.09000 * 109.46986 * 60.00254 * 16 15 12 42 42 H 1.08993 * 109.47662 * 300.00031 * 16 15 12 43 43 H 0.97005 * 119.99661 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58843 * 173.64958 * 25 9 8 45 45 H 1.08997 * 109.58487 * 293.92849 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4894 1.1454 2.1064 6 6 4.1029 0.2534 0.9906 7 6 5.0560 0.2586 2.1879 8 6 5.7576 1.6229 2.2705 9 7 4.7319 2.6740 2.3115 10 6 4.7314 3.5948 3.2957 11 8 3.8823 4.4606 3.3157 12 6 5.7859 3.5487 4.3713 13 1 6.7476 3.2925 3.9267 14 7 5.8811 4.8631 5.0204 15 6 5.4074 2.4925 5.4115 16 6 6.5364 2.3574 6.4353 17 6 6.1633 1.3175 7.4603 18 1 5.2159 0.8040 7.3884 19 6 7.0315 1.0217 8.4897 20 7 6.7061 0.1139 9.3839 21 14 8.6698 1.9104 8.6145 22 1 9.7014 1.1553 7.8591 23 1 8.5375 3.2748 8.0432 24 1 9.0727 2.0079 10.0405 25 6 3.7105 2.7060 1.2559 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.6230 -0.7222 0.9127 32 1 4.6644 0.4554 0.0785 33 1 4.4913 0.0811 3.1032 34 1 5.8018 -0.5263 2.0626 35 1 6.3913 1.7645 1.3949 36 1 6.3645 1.6690 3.1747 37 1 6.1926 5.5669 4.3678 38 1 5.0015 5.1234 5.4406 39 1 5.2499 1.5345 4.9160 40 1 4.4911 2.7941 5.9188 41 1 6.6939 3.3154 6.9309 42 1 7.4528 2.0558 5.9281 43 1 7.3171 -0.0945 10.1080 44 1 2.9662 3.4671 1.4905 45 1 4.1802 2.9367 0.2998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595936389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:09 Heat of formation + Delta-G solvation = -61.267800 kcal Electronic energy + Delta-G solvation = -22621.356832 eV Core-core repulsion = 19444.177425 eV Total energy + Delta-G solvation = -3177.179408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53901 -39.11476 -36.95498 -36.22892 -34.79911 -33.44357 -32.30691 -32.29255 -28.79855 -27.22614 -26.70183 -24.58884 -23.30759 -22.11074 -21.55563 -20.38699 -19.91327 -18.87008 -18.45015 -17.26777 -16.88574 -16.36515 -16.18665 -16.13890 -15.58185 -15.22611 -15.18749 -14.81498 -14.67112 -14.35547 -14.14805 -13.98773 -13.73637 -13.51572 -13.38882 -12.79378 -12.67116 -12.48345 -12.28092 -12.06505 -11.98405 -11.78450 -11.71163 -11.60634 -11.54863 -11.29651 -11.24214 -11.07198 -10.70344 -10.23589 -9.68643 -9.63190 -8.24395 -6.27824 1.38366 1.40352 1.44348 1.47940 1.58330 1.99934 2.42382 3.12180 3.40939 3.60981 3.75871 3.80582 3.86526 4.02114 4.04005 4.22044 4.26003 4.29913 4.39946 4.42086 4.55384 4.61028 4.66346 4.77210 4.78575 4.85085 4.87130 4.99198 5.04480 5.08842 5.13270 5.20261 5.31141 5.45752 5.49532 5.51688 5.64500 5.73561 5.77308 5.90257 6.03645 6.31343 6.33085 6.48077 6.80349 7.04678 7.36713 8.92551 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.004050 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.471410 B = 6911.608683 C = 7575.767927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.082 4.082 4 C -0.091 4.091 5 H 0.047 0.953 6 C -0.108 4.108 7 C -0.137 4.137 8 C 0.096 3.904 9 N -0.604 5.604 10 C 0.484 3.516 11 O -0.587 6.587 12 C 0.083 3.917 13 H 0.120 0.880 14 N -0.818 5.818 15 C -0.077 4.077 16 C 0.005 3.995 17 C -0.530 4.530 18 H 0.026 0.974 19 C 0.003 3.997 20 N -0.955 5.955 21 Si 0.951 3.049 22 H -0.262 1.262 23 H -0.245 1.245 24 H -0.290 1.290 25 C 0.113 3.887 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.349 0.651 38 H 0.345 0.655 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.265 0.735 44 H 0.066 0.934 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 2.129 -24.115 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.175 4.175 3 C -0.119 4.119 4 C -0.110 4.110 5 H 0.066 0.934 6 C -0.145 4.145 7 C -0.176 4.176 8 C -0.026 4.026 9 N -0.336 5.336 10 C 0.271 3.729 11 O -0.468 6.468 12 C -0.032 4.032 13 H 0.138 0.862 14 N -0.347 5.347 15 C -0.116 4.116 16 C -0.033 4.033 17 C -0.568 4.568 18 H 0.044 0.956 19 C -0.193 4.193 20 N -0.596 5.596 21 Si 0.775 3.225 22 H -0.187 1.187 23 H -0.168 1.168 24 H -0.216 1.216 25 C -0.010 4.010 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.097 2.172 -23.485 23.788 hybrid contribution -0.627 0.216 0.195 0.691 sum -3.724 2.388 -23.291 23.707 Atomic orbital electron populations 1.24014 0.96271 1.02276 1.01552 1.23073 0.96089 0.98865 0.99501 1.20698 0.97565 0.95512 0.98158 1.21402 0.96354 0.94787 0.98493 0.93443 1.21598 0.95963 0.98659 0.98295 1.22013 0.99811 0.96882 0.98852 1.22193 0.89843 0.86256 1.04319 1.48296 1.30311 1.29137 1.25866 1.22443 0.86724 0.80683 0.83076 1.90621 1.40741 1.38442 1.76992 1.21690 0.97360 0.92657 0.91507 0.86243 1.59045 1.36403 1.03141 1.36101 1.21264 0.98847 0.96101 0.95352 1.19353 0.94583 0.95721 0.93605 1.21526 1.03578 1.21356 1.10387 0.95567 1.26006 1.02776 0.95618 0.94871 1.70087 1.38861 1.34789 1.15869 0.85634 0.78976 0.80695 0.77229 1.18669 1.16830 1.21591 1.21723 0.90872 0.97712 0.90653 0.88673 0.87827 0.86471 0.91799 0.88978 0.90733 0.89619 0.93715 0.88612 0.88282 0.89495 0.83801 0.84191 0.91741 0.94645 0.95327 0.95759 0.92652 0.91501 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 14.32 67.78 0.97 -2.13 16 2 C -0.16 -2.36 9.03 25.64 0.23 -2.13 16 3 C -0.08 -1.19 5.14 29.85 0.15 -1.04 16 4 C -0.09 -1.66 2.33 -10.72 -0.02 -1.69 16 5 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 6 C -0.11 -1.62 5.00 30.62 0.15 -1.46 16 7 C -0.14 -2.57 6.10 30.82 0.19 -2.38 16 8 C 0.10 1.86 5.79 86.51 0.50 2.36 16 9 N -0.60 -14.71 2.97 -818.06 -2.43 -17.14 16 10 C 0.48 14.93 6.94 87.66 0.61 15.54 16 11 O -0.59 -21.68 15.66 -3.05 -0.05 -21.73 16 12 C 0.08 2.59 2.29 44.17 0.10 2.69 16 13 H 0.12 3.20 6.79 -2.38 -0.02 3.18 16 14 N -0.82 -25.35 8.44 -171.80 -1.45 -26.80 16 15 C -0.08 -3.02 4.45 30.59 0.14 -2.88 16 16 C 0.00 0.22 3.93 29.85 0.12 0.34 16 17 C -0.53 -30.77 9.66 25.60 0.25 -30.53 16 18 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 19 C 0.00 0.21 5.47 84.66 0.46 0.67 16 20 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 21 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.24 -10.82 6.54 99.48 0.65 -10.17 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 C 0.11 2.36 5.71 86.36 0.49 2.85 16 26 H 0.09 1.41 7.84 -2.91 -0.02 1.39 16 27 H 0.10 1.38 8.06 -2.91 -0.02 1.35 16 28 H 0.12 1.56 6.94 -2.91 -0.02 1.54 16 29 H 0.06 0.99 7.79 -2.39 -0.02 0.97 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.04 6.68 -2.38 -0.02 1.03 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.09 1.90 4.85 -2.39 -0.01 1.89 16 37 H 0.35 9.09 9.06 -89.69 -0.81 8.27 16 38 H 0.34 11.34 8.58 -89.69 -0.77 10.57 16 39 H 0.06 2.44 6.99 -2.39 -0.02 2.42 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 42 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 43 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 44 H 0.07 1.72 7.01 -2.38 -0.02 1.70 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -71.87 351.80 1.94 -69.93 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.66 Total: 29.36 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 4.34 Total: -19.78 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.58 Total: -104.21 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -71.87 1.94 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595936389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.664 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds