Wall clock time and date at job start Tue Mar 31 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09002 * 109.47163 * 54.40374 * 3 2 1 5 5 N 1.46901 * 109.47248 * 174.40640 * 3 2 1 6 6 C 1.46898 * 111.00160 * 276.44435 * 5 3 2 7 7 C 1.52998 * 109.47001 * 174.03632 * 6 5 3 8 8 H 1.08994 * 109.47133 * 304.99896 * 7 6 5 9 9 C 1.52997 * 109.47247 * 65.00469 * 7 6 5 10 10 C 1.53005 * 109.46975 * 185.00027 * 7 6 5 11 11 C 1.50700 * 109.47095 * 175.00015 * 10 7 6 12 12 H 1.07997 * 120.00249 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99878 * 180.02562 * 11 10 7 14 14 N 1.31509 * 119.99912 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99837 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47493 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47368 * 119.99945 * 15 13 11 18 18 H 1.48503 * 109.46939 * 239.99720 * 15 13 11 19 19 C 1.50700 * 109.47167 * 294.40769 * 3 2 1 20 20 C 1.41383 * 128.00648 * 284.67608 * 19 3 2 21 21 C 1.50701 * 126.80210 * 0.03643 * 20 19 3 22 22 N 1.30178 * 106.39094 * 179.89328 * 20 19 3 23 23 O 1.20917 * 111.60991 * 0.39489 * 22 20 19 24 24 C 1.34046 * 111.56500 * 359.74029 * 23 22 20 25 25 C 1.50697 * 126.77755 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46943 * 185.34224 * 1 2 3 27 27 H 1.09002 * 109.47148 * 305.34341 * 1 2 3 28 28 H 1.09004 * 109.46954 * 65.34498 * 1 2 3 29 29 H 1.09001 * 109.47027 * 239.99967 * 2 1 3 30 30 H 1.08993 * 109.47313 * 120.00088 * 2 1 3 31 31 H 1.00903 * 110.99710 * 152.48771 * 5 3 2 32 32 H 1.09001 * 109.46926 * 294.03494 * 6 5 3 33 33 H 1.09003 * 109.47038 * 54.03373 * 6 5 3 34 34 H 1.09006 * 109.46575 * 299.99703 * 9 7 6 35 35 H 1.08994 * 109.47522 * 59.99665 * 9 7 6 36 36 H 1.09004 * 109.46994 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47259 * 294.99892 * 10 7 6 38 38 H 1.08998 * 109.46894 * 54.99948 * 10 7 6 39 39 H 0.97001 * 120.00352 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47188 * 89.99884 * 21 20 19 41 41 H 1.09002 * 109.46755 * 210.00263 * 21 20 19 42 42 H 1.08994 * 109.47002 * 329.99524 * 21 20 19 43 43 H 1.09003 * 109.47588 * 270.00617 * 25 24 23 44 44 H 1.09005 * 109.47176 * 30.00170 * 25 24 23 45 45 H 1.08996 * 109.47505 * 149.99893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 0.8356 5 7 3.5028 1.4446 0.1350 6 6 3.9016 1.3359 1.5446 7 6 5.4221 1.1918 1.6348 8 1 5.7437 0.3471 1.0257 9 6 6.0868 2.4715 1.1238 10 6 5.8263 0.9537 3.0911 11 6 7.3082 0.6898 3.1644 12 1 7.9022 0.6913 2.2625 13 6 7.9055 0.4454 4.3829 14 7 7.1820 0.4431 5.4811 15 14 9.7422 0.1177 4.4736 16 1 10.3234 0.1749 3.1082 17 1 10.3868 1.1455 5.3299 18 1 9.9766 -1.2287 5.0548 19 6 1.6539 2.1118 -1.2938 20 6 2.2308 1.9334 -2.5722 21 6 3.3756 1.0197 -2.9266 22 7 1.5749 2.7124 -3.3832 23 8 0.7109 3.3304 -2.8055 24 6 0.6778 3.0280 -1.5000 25 6 -0.2597 3.5958 -0.4658 26 1 -0.3633 -1.0232 0.0957 27 1 -0.3633 0.5945 0.8383 28 1 -0.3633 0.4287 -0.9340 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9041 2.2661 -0.2920 32 1 3.5891 2.2320 2.0808 33 1 3.4267 0.4617 1.9901 34 1 5.7988 2.6411 0.0862 35 1 5.7652 3.3163 1.7329 36 1 7.1701 2.3687 1.1876 37 1 5.5846 1.8357 3.6842 38 1 5.2842 0.0929 3.4826 39 1 7.6022 0.2715 6.3384 40 1 2.9862 0.0410 -3.2064 41 1 3.9321 1.4422 -3.7632 42 1 4.0368 0.9154 -2.0663 43 1 0.1836 4.4884 -0.0245 44 1 -1.2070 3.8561 -0.9381 45 1 -0.4341 2.8535 0.3131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602577093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:07 Heat of formation + Delta-G solvation = 27.449274 kcal Electronic energy + Delta-G solvation = -22546.823413 eV Core-core repulsion = 19373.491066 eV Total energy + Delta-G solvation = -3173.332347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.97805 -38.12695 -35.68514 -34.06448 -33.23535 -32.49364 -31.29929 -28.66674 -28.20509 -26.96297 -26.17503 -24.52779 -23.01264 -22.24717 -20.28697 -20.21831 -18.96369 -17.73374 -16.97574 -16.40652 -15.56482 -15.22821 -14.76913 -14.35722 -14.19909 -13.84508 -13.61445 -13.38525 -13.29222 -13.11152 -12.79457 -12.66483 -12.44524 -12.34426 -12.22782 -11.77886 -11.60697 -11.39977 -11.33091 -11.06726 -10.89074 -10.83656 -10.57919 -10.33547 -10.22208 -9.82096 -9.72366 -9.28248 -9.12058 -8.94860 -8.33878 -8.22002 -5.98432 -3.99350 1.36704 2.16330 3.01586 3.31680 3.39528 3.43490 4.04009 4.33694 4.39501 4.48359 4.77192 4.90223 5.06127 5.07896 5.14853 5.22220 5.35221 5.37721 5.41918 5.56296 5.58400 5.62109 5.67356 5.71956 5.75366 5.86069 5.91781 5.97427 6.05081 6.12801 6.22213 6.26945 6.33938 6.46278 6.55463 6.93572 7.10258 7.16238 7.31840 7.57178 7.69287 7.85076 8.01965 8.24508 8.45925 9.07309 9.64264 11.13124 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.003476 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.484868 B = 8054.415903 C = 8389.209245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.166 3.834 4 H 0.052 0.948 5 N -0.681 5.681 6 C 0.064 3.936 7 C -0.081 4.081 8 H 0.066 0.934 9 C -0.134 4.134 10 C 0.028 3.972 11 C -0.512 4.512 12 H 0.057 0.943 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.195 4.195 20 C 0.043 3.957 21 C -0.083 4.083 22 N -0.375 5.375 23 O 0.091 5.909 24 C -0.033 4.033 25 C -0.075 4.075 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.340 0.660 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.416 3.705 -12.556 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.056 3.944 4 H 0.070 0.930 5 N -0.313 5.313 6 C -0.064 4.064 7 C -0.100 4.100 8 H 0.084 0.916 9 C -0.191 4.191 10 C -0.010 4.010 11 C -0.550 4.550 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.199 4.199 20 C -0.116 4.116 21 C -0.141 4.141 22 N -0.082 5.082 23 O 0.028 5.972 24 C -0.097 4.097 25 C -0.133 4.133 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.261 3.277 -13.796 20.831 hybrid contribution 0.883 0.459 1.230 1.582 sum -14.378 3.735 -12.565 19.457 Atomic orbital electron populations 1.21788 0.96158 1.01625 1.01294 1.21506 0.94711 0.95334 1.03212 1.19777 0.89457 0.95091 0.90065 0.92987 1.60643 1.06530 1.46282 1.17845 1.22212 0.98137 0.99862 0.86221 1.21197 0.90773 0.97465 1.00594 0.91580 1.21733 1.01992 0.97600 0.97766 1.19115 0.96173 0.96741 0.88955 1.21275 0.93582 1.47362 0.92789 0.92515 1.25014 0.97900 0.95682 0.95936 1.69970 1.35371 1.50276 0.98061 0.86589 0.85893 0.77792 0.78050 1.19742 1.21138 1.21091 1.21060 0.99544 1.02069 0.97232 1.23465 0.99756 0.98860 0.89551 1.20355 0.93659 0.96186 1.03891 1.73833 1.02877 1.10161 1.21347 1.84788 1.42665 1.51266 1.18486 1.24216 1.00388 0.98827 0.86317 1.20367 0.96843 1.01864 0.94200 0.92570 0.92875 0.93200 0.91293 0.90905 0.84062 0.95741 0.91237 0.95005 0.94129 0.91915 0.96808 0.96687 0.93170 0.90644 0.91288 0.87516 0.89494 0.89900 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.65 37.16 0.36 -1.05 16 2 C -0.11 -1.23 5.62 -26.73 -0.15 -1.38 16 3 C 0.17 1.95 2.39 -68.87 -0.16 1.78 16 4 H 0.05 0.60 7.20 -51.93 -0.37 0.22 16 5 N -0.68 -9.20 4.53 -107.95 -0.49 -9.69 16 6 C 0.06 1.03 4.92 -3.83 -0.02 1.01 16 7 C -0.08 -1.59 2.55 -90.62 -0.23 -1.82 16 8 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 9 C -0.13 -2.43 8.77 37.16 0.33 -2.10 16 10 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 11 C -0.51 -14.10 8.41 -34.44 -0.29 -14.39 16 12 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C -0.19 -2.28 4.03 -104.42 -0.42 -2.70 16 20 C 0.04 0.55 7.24 -82.10 -0.59 -0.05 16 21 C -0.08 -0.94 10.34 36.01 0.37 -0.57 16 22 N -0.38 -5.20 12.07 33.43 0.40 -4.80 16 23 O 0.09 1.15 11.20 17.16 0.19 1.34 16 24 C -0.03 -0.35 7.38 -35.30 -0.26 -0.62 16 25 C -0.08 -0.52 10.11 36.00 0.36 -0.15 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.45 7.84 -51.93 -0.41 0.04 16 28 H 0.05 0.48 7.48 -51.93 -0.39 0.09 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.88 7.18 -51.93 -0.37 0.51 16 31 H 0.34 4.63 6.62 -39.29 -0.26 4.37 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.14 7.15 -51.93 -0.37 0.77 16 34 H 0.03 0.49 6.82 -51.93 -0.35 0.13 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.25 6.95 -51.93 -0.36 0.88 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.26 6.27 -51.93 -0.33 0.93 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.56 7.39 -51.93 -0.38 0.18 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -30.11 359.09 -7.45 -37.56 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.75 Total: -0.38 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -0.93 Total: -20.00 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.65 Total: -40.43 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.19 Total: 1.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.11 -7.45 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.012 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds