Wall clock time and date at job start Tue Mar 31 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09002 * 109.47163 * 54.40374 * 3 2 1 5 5 N 1.46901 * 109.47248 * 174.40640 * 3 2 1 6 6 C 1.46898 * 111.00160 * 276.44435 * 5 3 2 7 7 C 1.52998 * 109.47001 * 174.03632 * 6 5 3 8 8 H 1.08994 * 109.47133 * 304.99896 * 7 6 5 9 9 C 1.52997 * 109.47247 * 65.00469 * 7 6 5 10 10 C 1.53005 * 109.46975 * 185.00027 * 7 6 5 11 11 C 1.50700 * 109.47095 * 175.00015 * 10 7 6 12 12 H 1.07997 * 120.00249 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99878 * 180.02562 * 11 10 7 14 14 N 1.31509 * 119.99912 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99837 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47493 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47368 * 119.99945 * 15 13 11 18 18 H 1.48503 * 109.46939 * 239.99720 * 15 13 11 19 19 C 1.50700 * 109.47167 * 294.40769 * 3 2 1 20 20 C 1.41383 * 128.00648 * 284.67608 * 19 3 2 21 21 C 1.50701 * 126.80210 * 0.03643 * 20 19 3 22 22 N 1.30178 * 106.39094 * 179.89328 * 20 19 3 23 23 O 1.20917 * 111.60991 * 0.39489 * 22 20 19 24 24 C 1.34046 * 111.56500 * 359.74029 * 23 22 20 25 25 C 1.50697 * 126.77755 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46943 * 185.34224 * 1 2 3 27 27 H 1.09002 * 109.47148 * 305.34341 * 1 2 3 28 28 H 1.09004 * 109.46954 * 65.34498 * 1 2 3 29 29 H 1.09001 * 109.47027 * 239.99967 * 2 1 3 30 30 H 1.08993 * 109.47313 * 120.00088 * 2 1 3 31 31 H 1.00903 * 110.99710 * 152.48771 * 5 3 2 32 32 H 1.09001 * 109.46926 * 294.03494 * 6 5 3 33 33 H 1.09003 * 109.47038 * 54.03373 * 6 5 3 34 34 H 1.09006 * 109.46575 * 299.99703 * 9 7 6 35 35 H 1.08994 * 109.47522 * 59.99665 * 9 7 6 36 36 H 1.09004 * 109.46994 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47259 * 294.99892 * 10 7 6 38 38 H 1.08998 * 109.46894 * 54.99948 * 10 7 6 39 39 H 0.97001 * 120.00352 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47188 * 89.99884 * 21 20 19 41 41 H 1.09002 * 109.46755 * 210.00263 * 21 20 19 42 42 H 1.08994 * 109.47002 * 329.99524 * 21 20 19 43 43 H 1.09003 * 109.47588 * 270.00617 * 25 24 23 44 44 H 1.09005 * 109.47176 * 30.00170 * 25 24 23 45 45 H 1.08996 * 109.47505 * 149.99893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 0.8356 5 7 3.5028 1.4446 0.1350 6 6 3.9016 1.3359 1.5446 7 6 5.4221 1.1918 1.6348 8 1 5.7437 0.3471 1.0257 9 6 6.0868 2.4715 1.1238 10 6 5.8263 0.9537 3.0911 11 6 7.3082 0.6898 3.1644 12 1 7.9022 0.6913 2.2625 13 6 7.9055 0.4454 4.3829 14 7 7.1820 0.4431 5.4811 15 14 9.7422 0.1177 4.4736 16 1 10.3234 0.1749 3.1082 17 1 10.3868 1.1455 5.3299 18 1 9.9766 -1.2287 5.0548 19 6 1.6539 2.1118 -1.2938 20 6 2.2308 1.9334 -2.5722 21 6 3.3756 1.0197 -2.9266 22 7 1.5749 2.7124 -3.3832 23 8 0.7109 3.3304 -2.8055 24 6 0.6778 3.0280 -1.5000 25 6 -0.2597 3.5958 -0.4658 26 1 -0.3633 -1.0232 0.0957 27 1 -0.3633 0.5945 0.8383 28 1 -0.3633 0.4287 -0.9340 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9041 2.2661 -0.2920 32 1 3.5891 2.2320 2.0808 33 1 3.4267 0.4617 1.9901 34 1 5.7988 2.6411 0.0862 35 1 5.7652 3.3163 1.7329 36 1 7.1701 2.3687 1.1876 37 1 5.5846 1.8357 3.6842 38 1 5.2842 0.0929 3.4826 39 1 7.6022 0.2715 6.3384 40 1 2.9862 0.0410 -3.2064 41 1 3.9321 1.4422 -3.7632 42 1 4.0368 0.9154 -2.0663 43 1 0.1836 4.4884 -0.0245 44 1 -1.2070 3.8561 -0.9381 45 1 -0.4341 2.8535 0.3131 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602577093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:06 Heat of formation + Delta-G solvation = 10.990716 kcal Electronic energy + Delta-G solvation = -22547.537110 eV Core-core repulsion = 19373.491066 eV Total energy + Delta-G solvation = -3174.046043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.90782 -39.23779 -37.12072 -35.08676 -34.66822 -33.70268 -32.63747 -29.58122 -29.20808 -28.61177 -27.35533 -25.93188 -24.13847 -23.71926 -21.24038 -21.14649 -20.51928 -18.67359 -18.50826 -17.88215 -16.73780 -16.60125 -16.14042 -15.72251 -15.21378 -15.01702 -14.64455 -14.33002 -14.28232 -14.12395 -13.91139 -13.85918 -13.65956 -13.39351 -13.28100 -13.15396 -12.98079 -12.78324 -12.59892 -12.49362 -12.25314 -12.15492 -11.92022 -11.86128 -11.64015 -11.36893 -11.02324 -10.95321 -10.73124 -10.51244 -10.06789 -9.34325 -8.15421 -6.23594 0.50727 1.22970 1.40674 1.41889 1.54167 2.21618 2.43659 3.04329 3.18508 3.37292 3.59448 3.87873 4.01172 4.18134 4.26622 4.30748 4.36139 4.45425 4.51370 4.58580 4.62233 4.67130 4.71935 4.77785 4.81509 4.82344 4.90699 4.94883 4.98733 5.07240 5.19530 5.21501 5.26738 5.31209 5.35015 5.42894 5.47317 5.51907 5.59758 5.84561 5.93605 6.11826 6.34854 6.45681 6.92920 7.34647 7.44589 8.96691 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.003476 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.484868 B = 8054.415903 C = 8389.209245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.172 3.828 4 H 0.061 0.939 5 N -0.678 5.678 6 C 0.079 3.921 7 C -0.072 4.072 8 H 0.058 0.942 9 C -0.126 4.126 10 C 0.033 3.967 11 C -0.526 4.526 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.957 3.043 16 H -0.263 1.263 17 H -0.281 1.281 18 H -0.280 1.280 19 C -0.209 4.209 20 C 0.034 3.966 21 C -0.081 4.081 22 N -0.401 5.401 23 O 0.083 5.917 24 C -0.020 4.020 25 C -0.078 4.078 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.342 0.658 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.042 0.958 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 4.184 -13.251 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.063 3.937 4 H 0.079 0.921 5 N -0.310 5.310 6 C -0.050 4.050 7 C -0.091 4.091 8 H 0.076 0.924 9 C -0.183 4.183 10 C -0.005 4.005 11 C -0.565 4.565 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.782 3.218 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.213 4.213 20 C -0.125 4.125 21 C -0.138 4.138 22 N -0.111 5.111 23 O 0.022 5.978 24 C -0.084 4.084 25 C -0.135 4.135 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.008 0.992 38 H 0.007 0.993 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.774 3.763 -14.509 21.759 hybrid contribution 0.979 0.318 1.446 1.775 sum -14.794 4.081 -13.063 20.154 Atomic orbital electron populations 1.21734 0.94510 1.02306 1.01701 1.21487 0.96151 0.94782 1.02240 1.19746 0.87996 0.95545 0.90461 0.92110 1.60553 1.08131 1.46486 1.15794 1.21885 0.95477 0.99721 0.87907 1.20979 0.93458 0.97969 0.96677 0.92375 1.21637 1.00484 0.96605 0.99600 1.19004 0.94928 0.94406 0.92112 1.21681 0.94975 1.46842 0.92958 0.92233 1.25897 1.02738 0.95534 0.95640 1.70095 1.37434 1.51369 0.98663 0.85513 0.80131 0.77676 0.78435 1.18679 1.20639 1.20633 1.21016 1.00455 1.03111 0.96723 1.23749 0.99940 0.98757 0.90033 1.20349 0.93299 0.96407 1.03758 1.73827 1.03826 1.11174 1.22243 1.84759 1.42472 1.51252 1.19359 1.24849 0.99969 0.97548 0.86039 1.20601 0.96952 1.02450 0.93448 0.92005 0.91644 0.93343 0.92112 0.92011 0.83869 0.95640 0.91734 0.91888 0.94205 0.93858 0.99197 0.99304 0.93013 0.89927 0.90916 0.88042 0.88241 0.87979 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.65 71.98 0.69 -1.72 16 2 C -0.11 -2.29 5.62 30.59 0.17 -2.12 16 3 C 0.17 3.74 2.39 44.17 0.11 3.85 16 4 H 0.06 1.25 7.20 -2.39 -0.02 1.23 16 5 N -0.68 -17.41 4.53 -495.45 -2.24 -19.66 16 6 C 0.08 2.49 4.92 86.30 0.42 2.92 16 7 C -0.07 -2.81 2.55 -10.79 -0.03 -2.83 16 8 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 9 C -0.13 -4.47 8.77 71.98 0.63 -3.84 16 10 C 0.03 1.69 4.45 29.85 0.13 1.82 16 11 C -0.53 -29.35 8.41 25.60 0.22 -29.13 16 12 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 13 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 14 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 15 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 16 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 C -0.21 -4.54 4.03 -19.73 -0.08 -4.62 16 20 C 0.03 0.83 7.24 43.58 0.32 1.15 16 21 C -0.08 -1.75 10.34 71.24 0.74 -1.01 16 22 N -0.40 -10.78 12.07 -49.54 -0.60 -11.37 16 23 O 0.08 1.97 11.20 71.58 0.80 2.77 16 24 C -0.02 -0.38 7.38 25.04 0.18 -0.19 16 25 C -0.08 -0.83 10.11 71.23 0.72 -0.11 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.93 7.84 -2.39 -0.02 0.91 16 28 H 0.05 0.83 7.48 -2.39 -0.02 0.81 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.44 7.18 -2.39 -0.02 1.42 16 31 H 0.34 8.69 6.62 -89.69 -0.59 8.10 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 2.11 7.15 -2.39 -0.02 2.09 16 34 H 0.06 1.83 6.82 -2.38 -0.02 1.81 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.69 6.95 -2.38 -0.02 1.67 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 2.29 6.27 -2.39 -0.01 2.28 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.10 0.91 7.39 -2.39 -0.02 0.90 16 Total: -1.00 -65.12 359.09 5.33 -59.79 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.37 Total: 13.86 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.69 Total: -35.42 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.56 Total: -87.24 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.80 Total: 2.77 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -65.12 5.33 -59.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602577093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.782 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds