Wall clock time and date at job start Tue Mar 31 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 H 1.08996 * 109.38989 * 57.57245 * 3 2 1 5 5 C 1.50256 * 109.29956 * 177.31713 * 3 2 1 6 6 O 1.21277 * 118.62842 * 317.30203 * 5 3 2 7 7 N 1.33717 * 122.75052 * 137.30340 * 5 3 2 8 8 C 1.46496 * 118.54135 * 178.59021 * 7 5 3 9 9 C 1.53000 * 109.47230 * 265.66070 * 8 7 5 10 10 C 1.46012 * 122.92587 * 358.30748 * 7 5 3 11 11 C 1.52982 * 110.04151 * 18.16427 * 10 7 5 12 12 N 1.46905 * 109.38160 * 297.77880 * 3 2 1 13 13 C 1.46902 * 111.00173 * 313.01738 * 12 3 2 14 14 C 1.52999 * 109.46982 * 171.77057 * 13 12 3 15 15 C 1.50704 * 115.55152 * 296.75521 * 14 13 12 16 16 H 1.07997 * 119.99910 * 144.18505 * 15 14 13 17 17 C 1.37879 * 119.99716 * 324.18387 * 15 14 13 18 18 N 1.31513 * 120.00106 * 342.26662 * 17 15 14 19 19 Si 1.86801 * 119.99991 * 162.26461 * 17 15 14 20 20 H 1.48495 * 109.46868 * 94.98924 * 19 17 15 21 21 H 1.48500 * 109.47034 * 214.99339 * 19 17 15 22 22 H 1.48498 * 109.46808 * 334.99206 * 19 17 15 23 23 C 1.53003 * 117.50018 * 151.07969 * 14 13 12 24 24 C 1.53004 * 117.50016 * 82.42195 * 14 13 12 25 25 H 1.09005 * 109.47342 * 173.95378 * 1 2 3 26 26 H 1.09003 * 109.47484 * 293.95294 * 1 2 3 27 27 H 1.09000 * 109.47063 * 53.95526 * 1 2 3 28 28 H 1.09000 * 109.47284 * 239.99196 * 2 1 3 29 29 H 1.09005 * 109.46780 * 119.99843 * 2 1 3 30 30 H 1.09010 * 109.46762 * 25.65455 * 8 7 5 31 31 H 1.08994 * 109.47580 * 145.65542 * 8 7 5 32 32 H 1.09000 * 109.47162 * 304.92739 * 9 8 7 33 33 H 1.09000 * 109.47165 * 64.92619 * 9 8 7 34 34 H 1.08998 * 109.47398 * 184.92543 * 9 8 7 35 35 H 1.09007 * 109.37391 * 138.33995 * 10 7 5 36 36 H 1.08999 * 109.37870 * 258.10309 * 10 7 5 37 37 H 1.09005 * 109.59578 * 69.48386 * 11 10 7 38 38 H 1.09003 * 109.59251 * 189.77906 * 11 10 7 39 39 H 1.09001 * 109.46912 * 291.76758 * 13 12 3 40 40 H 1.09001 * 109.47170 * 51.77236 * 13 12 3 41 41 H 0.97000 * 120.00015 * 185.14265 * 18 17 15 42 42 H 1.08998 * 117.49418 * 0.02562 * 23 14 13 43 43 H 1.08990 * 117.49802 * 145.02007 * 23 14 13 44 44 H 1.08994 * 117.49875 * 214.98384 * 24 14 13 45 45 H 1.09003 * 117.49290 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6408 1.9674 0.8678 5 6 3.5411 1.4384 0.0664 6 8 4.0871 0.6659 0.8252 7 7 4.3002 2.2510 -0.6762 8 6 5.7550 2.1912 -0.5149 9 6 6.2006 3.2537 0.4918 10 6 3.7440 3.1911 -1.6452 11 6 2.2595 3.4234 -1.3577 12 7 1.5936 2.1174 -1.2261 13 6 1.8393 1.2797 -2.4075 14 6 1.1813 1.9190 -3.6319 15 6 -0.3204 2.0335 -3.5773 16 1 -0.8127 2.8914 -4.0108 17 6 -1.0658 1.0428 -2.9739 18 7 -0.5354 -0.1416 -2.7607 19 14 -2.8290 1.3830 -2.4592 20 1 -3.7529 0.9339 -3.5315 21 1 -3.1296 0.6458 -1.2057 22 1 -3.0058 2.8397 -2.2314 23 6 1.8205 1.6543 -4.9966 24 6 1.9492 3.0336 -4.3454 25 1 -0.3634 -1.0220 -0.1082 26 1 -0.3634 0.4172 0.9392 27 1 -0.3633 0.6047 -0.8309 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 6.0399 1.2039 -0.1511 31 1 6.2351 2.3769 -1.4756 32 1 5.8396 4.2313 0.1721 33 1 5.7905 3.0184 1.4739 34 1 7.2891 3.2685 0.5467 35 1 4.2782 4.1389 -1.5771 36 1 3.8567 2.7839 -2.6499 37 1 2.1502 3.9847 -0.4297 38 1 1.8115 3.9836 -2.1785 39 1 2.9130 1.1941 -2.5752 40 1 1.4169 0.2882 -2.2442 41 1 -1.0810 -0.8604 -2.4051 42 1 2.7095 1.0242 -5.0221 43 1 1.1549 1.5632 -5.8548 44 1 1.3682 3.8493 -4.7756 45 1 2.9230 3.3116 -3.9422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602810447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:22 Heat of formation + Delta-G solvation = 19.978796 kcal Electronic energy + Delta-G solvation = -24706.149612 eV Core-core repulsion = 21532.493321 eV Total energy + Delta-G solvation = -3173.656291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69897 -37.70619 -35.88165 -35.40044 -32.81522 -31.78573 -30.33344 -28.56989 -27.02798 -25.49548 -24.54488 -23.30533 -21.91759 -21.24687 -20.44454 -19.34892 -17.67119 -16.70897 -16.43046 -16.09458 -15.29052 -14.92286 -14.61999 -14.26132 -14.03162 -13.65572 -13.42036 -13.24399 -13.00345 -12.64915 -12.18498 -12.08139 -11.85466 -11.64520 -11.37918 -11.25226 -11.10439 -10.98710 -10.93410 -10.72012 -10.64669 -10.38168 -10.27214 -10.05006 -9.83651 -9.58455 -9.27167 -9.05953 -8.61058 -8.47811 -7.86266 -7.37456 -6.01546 -3.95519 2.96755 3.19721 3.30826 3.40933 3.45781 4.41964 4.53820 4.79107 5.04095 5.13119 5.20770 5.26561 5.33790 5.42104 5.49447 5.60322 5.62073 5.67713 5.77122 5.94071 5.97119 6.13797 6.16639 6.22051 6.29445 6.33485 6.38072 6.50192 6.56455 6.63779 6.65590 6.70105 6.85053 6.91474 6.96095 7.07577 7.29476 7.51808 7.64097 7.67092 7.86516 7.93171 8.06213 8.48299 8.49273 8.93697 9.59022 11.00534 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.007445 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.622421 B = 3759.778755 C = 4532.163500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C 0.074 3.926 4 H 0.102 0.898 5 C 0.491 3.509 6 O -0.559 6.559 7 N -0.604 5.604 8 C 0.102 3.898 9 C -0.162 4.162 10 C 0.071 3.929 11 C 0.038 3.962 12 N -0.488 5.488 13 C 0.073 3.927 14 C 0.071 3.929 15 C -0.476 4.476 16 H 0.056 0.944 17 C 0.086 3.914 18 N -0.868 5.868 19 Si 0.880 3.120 20 H -0.287 1.287 21 H -0.281 1.281 22 H -0.273 1.273 23 C -0.205 4.205 24 C -0.224 4.224 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.108 0.892 39 H -0.003 1.003 40 H 0.138 0.862 41 H 0.263 0.737 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 5.350 3.515 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.038 4.038 4 H 0.120 0.880 5 C 0.278 3.722 6 O -0.436 6.436 7 N -0.338 5.338 8 C -0.021 4.021 9 C -0.221 4.221 10 C -0.053 4.053 11 C -0.091 4.091 12 N -0.210 5.210 13 C -0.053 4.053 14 C 0.071 3.929 15 C -0.512 4.512 16 H 0.074 0.926 17 C -0.116 4.116 18 N -0.506 5.506 19 Si 0.707 3.293 20 H -0.213 1.213 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.243 4.243 24 C -0.261 4.261 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.015 0.985 40 H 0.155 0.845 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.625 4.848 4.096 9.921 hybrid contribution 0.194 0.230 0.036 0.303 sum 7.819 5.078 4.132 10.198 Atomic orbital electron populations 1.22140 0.94006 1.02257 1.02996 1.21400 0.97802 0.92249 1.01967 1.22005 0.86859 0.98748 0.96155 0.88027 1.21715 0.92131 0.79046 0.79286 1.90609 1.74316 1.39457 1.39259 1.47570 1.06547 1.39263 1.40399 1.21402 0.80778 1.00821 0.99125 1.22074 1.00910 0.99063 1.00037 1.22375 0.97535 0.92613 0.92817 1.22613 0.89121 0.94202 1.03193 1.62470 1.54526 1.02351 1.01659 1.22237 0.94117 1.00797 0.88149 1.18861 0.93537 0.93261 0.87275 1.20293 0.88554 1.06202 1.36199 0.92554 1.24712 0.97542 0.94748 0.94611 1.69808 1.35890 1.00864 1.44038 0.86813 0.85193 0.78825 0.78439 1.21346 1.20683 1.19779 1.22975 1.02230 0.97724 1.01410 1.23140 1.01016 0.92673 1.09313 0.93893 0.95467 0.86624 0.90983 0.92330 0.89678 0.91221 0.92692 0.92456 0.91929 0.91296 0.90610 0.91385 0.87383 0.98455 0.84517 0.92650 0.92203 0.90408 0.90745 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.58 37.16 0.32 -2.83 16 2 C -0.10 -1.88 4.64 -26.74 -0.12 -2.00 16 3 C 0.07 1.39 2.45 -69.08 -0.17 1.22 16 4 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 5 C 0.49 9.14 6.59 -11.67 -0.08 9.06 16 6 O -0.56 -11.69 15.43 5.56 0.09 -11.60 16 7 N -0.60 -9.64 2.66 -174.58 -0.46 -10.10 16 8 C 0.10 1.38 6.06 -4.04 -0.02 1.36 16 9 C -0.16 -1.87 10.23 37.16 0.38 -1.49 16 10 C 0.07 1.04 5.18 -4.31 -0.02 1.01 16 11 C 0.04 0.61 5.39 -3.68 -0.02 0.59 16 12 N -0.49 -9.41 4.08 -228.06 -0.93 -10.34 16 13 C 0.07 1.55 3.04 -3.82 -0.01 1.54 16 14 C 0.07 1.59 1.53 -155.66 -0.24 1.36 16 15 C -0.48 -11.84 8.87 -34.44 -0.31 -12.15 16 16 H 0.06 1.44 7.88 -52.49 -0.41 1.03 16 17 C 0.09 2.13 3.85 -17.82 -0.07 2.07 16 18 N -0.87 -21.59 8.59 55.43 0.48 -21.11 16 19 Si 0.88 19.92 29.05 -169.99 -4.94 14.98 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.20 -4.37 9.94 -26.69 -0.27 -4.63 16 24 C -0.22 -4.35 7.90 -26.69 -0.21 -4.56 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.12 2.61 3.12 -51.93 -0.16 2.44 16 28 H 0.07 1.53 5.99 -51.93 -0.31 1.22 16 29 H 0.06 1.11 7.73 -51.93 -0.40 0.71 16 30 H 0.08 1.29 7.08 -51.92 -0.37 0.92 16 31 H 0.07 0.81 8.07 -51.93 -0.42 0.40 16 32 H 0.05 0.59 7.94 -51.93 -0.41 0.18 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.08 1.20 4.47 -51.93 -0.23 0.97 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.11 1.82 6.04 -51.93 -0.31 1.51 16 39 H 0.00 -0.05 5.65 -51.93 -0.29 -0.35 16 40 H 0.14 3.25 2.90 -51.93 -0.15 3.10 16 41 H 0.26 6.37 8.17 -40.82 -0.33 6.04 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.07 1.17 5.02 -51.93 -0.26 0.91 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -26.38 326.60 -8.77 -35.14 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.08 Total: 7.58 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.84 Total: -9.46 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.92 Total: -41.56 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.94 Total: 14.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.38 -8.77 -35.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.121 kcal (2) G-P(sol) polarization free energy of solvation -26.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds