Wall clock time and date at job start Tue Mar 31 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 H 1.08996 * 109.38989 * 57.57245 * 3 2 1 5 5 C 1.50256 * 109.29956 * 177.31713 * 3 2 1 6 6 O 1.21277 * 118.62842 * 317.30203 * 5 3 2 7 7 N 1.33717 * 122.75052 * 137.30340 * 5 3 2 8 8 C 1.46496 * 118.54135 * 178.59021 * 7 5 3 9 9 C 1.53000 * 109.47230 * 265.66070 * 8 7 5 10 10 C 1.46012 * 122.92587 * 358.30748 * 7 5 3 11 11 C 1.52982 * 110.04151 * 18.16427 * 10 7 5 12 12 N 1.46905 * 109.38160 * 297.77880 * 3 2 1 13 13 C 1.46902 * 111.00173 * 313.01738 * 12 3 2 14 14 C 1.52999 * 109.46982 * 171.77057 * 13 12 3 15 15 C 1.50704 * 115.55152 * 296.75521 * 14 13 12 16 16 H 1.07997 * 119.99910 * 144.18505 * 15 14 13 17 17 C 1.37879 * 119.99716 * 324.18387 * 15 14 13 18 18 N 1.31513 * 120.00106 * 342.26662 * 17 15 14 19 19 Si 1.86801 * 119.99991 * 162.26461 * 17 15 14 20 20 H 1.48495 * 109.46868 * 94.98924 * 19 17 15 21 21 H 1.48500 * 109.47034 * 214.99339 * 19 17 15 22 22 H 1.48498 * 109.46808 * 334.99206 * 19 17 15 23 23 C 1.53003 * 117.50018 * 151.07969 * 14 13 12 24 24 C 1.53004 * 117.50016 * 82.42195 * 14 13 12 25 25 H 1.09005 * 109.47342 * 173.95378 * 1 2 3 26 26 H 1.09003 * 109.47484 * 293.95294 * 1 2 3 27 27 H 1.09000 * 109.47063 * 53.95526 * 1 2 3 28 28 H 1.09000 * 109.47284 * 239.99196 * 2 1 3 29 29 H 1.09005 * 109.46780 * 119.99843 * 2 1 3 30 30 H 1.09010 * 109.46762 * 25.65455 * 8 7 5 31 31 H 1.08994 * 109.47580 * 145.65542 * 8 7 5 32 32 H 1.09000 * 109.47162 * 304.92739 * 9 8 7 33 33 H 1.09000 * 109.47165 * 64.92619 * 9 8 7 34 34 H 1.08998 * 109.47398 * 184.92543 * 9 8 7 35 35 H 1.09007 * 109.37391 * 138.33995 * 10 7 5 36 36 H 1.08999 * 109.37870 * 258.10309 * 10 7 5 37 37 H 1.09005 * 109.59578 * 69.48386 * 11 10 7 38 38 H 1.09003 * 109.59251 * 189.77906 * 11 10 7 39 39 H 1.09001 * 109.46912 * 291.76758 * 13 12 3 40 40 H 1.09001 * 109.47170 * 51.77236 * 13 12 3 41 41 H 0.97000 * 120.00015 * 185.14265 * 18 17 15 42 42 H 1.08998 * 117.49418 * 0.02562 * 23 14 13 43 43 H 1.08990 * 117.49802 * 145.02007 * 23 14 13 44 44 H 1.08994 * 117.49875 * 214.98384 * 24 14 13 45 45 H 1.09003 * 117.49290 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6408 1.9674 0.8678 5 6 3.5411 1.4384 0.0664 6 8 4.0871 0.6659 0.8252 7 7 4.3002 2.2510 -0.6762 8 6 5.7550 2.1912 -0.5149 9 6 6.2006 3.2537 0.4918 10 6 3.7440 3.1911 -1.6452 11 6 2.2595 3.4234 -1.3577 12 7 1.5936 2.1174 -1.2261 13 6 1.8393 1.2797 -2.4075 14 6 1.1813 1.9190 -3.6319 15 6 -0.3204 2.0335 -3.5773 16 1 -0.8127 2.8914 -4.0108 17 6 -1.0658 1.0428 -2.9739 18 7 -0.5354 -0.1416 -2.7607 19 14 -2.8290 1.3830 -2.4592 20 1 -3.7529 0.9339 -3.5315 21 1 -3.1296 0.6458 -1.2057 22 1 -3.0058 2.8397 -2.2314 23 6 1.8205 1.6543 -4.9966 24 6 1.9492 3.0336 -4.3454 25 1 -0.3634 -1.0220 -0.1082 26 1 -0.3634 0.4172 0.9392 27 1 -0.3633 0.6047 -0.8309 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 6.0399 1.2039 -0.1511 31 1 6.2351 2.3769 -1.4756 32 1 5.8396 4.2313 0.1721 33 1 5.7905 3.0184 1.4739 34 1 7.2891 3.2685 0.5467 35 1 4.2782 4.1389 -1.5771 36 1 3.8567 2.7839 -2.6499 37 1 2.1502 3.9847 -0.4297 38 1 1.8115 3.9836 -2.1785 39 1 2.9130 1.1941 -2.5752 40 1 1.4169 0.2882 -2.2442 41 1 -1.0810 -0.8604 -2.4051 42 1 2.7095 1.0242 -5.0221 43 1 1.1549 1.5632 -5.8548 44 1 1.3682 3.8493 -4.7756 45 1 2.9230 3.3116 -3.9422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602810447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:21 Heat of formation + Delta-G solvation = 5.481006 kcal Electronic energy + Delta-G solvation = -24706.778284 eV Core-core repulsion = 21532.493321 eV Total energy + Delta-G solvation = -3174.284962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10087 -39.25165 -37.24703 -36.94736 -34.45645 -33.38697 -31.55269 -29.94211 -28.55779 -27.33544 -25.98714 -24.51097 -23.31466 -22.84413 -21.92078 -20.98813 -19.19922 -18.17308 -17.73899 -17.67459 -16.79365 -16.43306 -16.31452 -15.81544 -15.31426 -15.09957 -14.89568 -14.64854 -14.44760 -14.02113 -13.64823 -13.29738 -13.16178 -13.03587 -12.92500 -12.86260 -12.79973 -12.55048 -12.36888 -12.22298 -12.07418 -11.95198 -11.89817 -11.65420 -11.48328 -11.16261 -10.98656 -10.79504 -10.31887 -9.73847 -9.65262 -8.84061 -7.89208 -5.87193 1.47795 1.53975 1.56264 1.62114 1.94756 2.56030 3.03790 3.28064 3.49088 3.80498 3.92494 4.03190 4.06976 4.14420 4.23662 4.34001 4.40874 4.44906 4.48526 4.64005 4.65492 4.72105 4.76753 4.86141 4.89404 4.93579 4.96432 4.99436 5.06854 5.14303 5.23264 5.24211 5.24914 5.36843 5.45065 5.50086 5.63950 5.76937 5.98472 6.16111 6.27570 6.39414 6.43518 6.67320 7.04180 7.10339 7.68231 9.10509 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.007445 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.622421 B = 3759.778755 C = 4532.163500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C 0.076 3.924 4 H 0.112 0.888 5 C 0.487 3.513 6 O -0.590 6.590 7 N -0.600 5.600 8 C 0.096 3.904 9 C -0.153 4.153 10 C 0.075 3.925 11 C 0.035 3.965 12 N -0.500 5.500 13 C 0.090 3.910 14 C 0.048 3.952 15 C -0.492 4.492 16 H 0.042 0.958 17 C 0.062 3.938 18 N -0.877 5.877 19 Si 0.919 3.081 20 H -0.291 1.291 21 H -0.280 1.280 22 H -0.275 1.275 23 C -0.214 4.214 24 C -0.193 4.193 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.105 0.895 39 H -0.005 1.005 40 H 0.111 0.889 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 7.230 3.778 12.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.036 4.036 4 H 0.130 0.870 5 C 0.274 3.726 6 O -0.470 6.470 7 N -0.332 5.332 8 C -0.026 4.026 9 C -0.211 4.211 10 C -0.048 4.048 11 C -0.093 4.093 12 N -0.223 5.223 13 C -0.037 4.037 14 C 0.047 3.953 15 C -0.529 4.529 16 H 0.061 0.939 17 C -0.139 4.139 18 N -0.515 5.515 19 Si 0.746 3.254 20 H -0.218 1.218 21 H -0.206 1.206 22 H -0.200 1.200 23 C -0.253 4.253 24 C -0.230 4.230 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.013 0.987 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.933 6.758 4.337 12.011 hybrid contribution -0.203 -0.342 -0.090 0.408 sum 8.730 6.415 4.247 11.636 Atomic orbital electron populations 1.22028 0.94373 1.01647 1.02804 1.21251 0.97329 0.93071 1.00851 1.21941 0.87330 0.98002 0.96285 0.87032 1.21636 0.92160 0.79257 0.79511 1.90595 1.74729 1.40853 1.40840 1.47640 1.07542 1.38486 1.39530 1.21611 0.79284 1.00628 1.01040 1.21999 1.02353 0.98678 0.98098 1.22392 0.96808 0.93836 0.91806 1.22680 0.89999 0.92590 1.04061 1.62393 1.55657 1.03243 1.00997 1.21872 0.93372 0.99862 0.88545 1.18886 0.92667 0.95719 0.87987 1.20433 0.90202 1.05713 1.36560 0.93929 1.25052 0.99393 0.94714 0.94775 1.69901 1.36322 1.01043 1.44256 0.86215 0.82911 0.78322 0.77914 1.21826 1.20580 1.20026 1.22950 1.02194 0.99685 1.00487 1.23128 1.01608 0.91454 1.06784 0.94352 0.94067 0.88571 0.93214 0.92174 0.91785 0.88724 0.91330 0.94507 0.89591 0.87443 0.91412 0.89630 0.87733 0.98671 0.87166 0.92917 0.91618 0.91725 0.90601 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 8.58 71.98 0.62 -5.46 16 2 C -0.09 -3.41 4.64 30.59 0.14 -3.27 16 3 C 0.08 2.78 2.45 44.03 0.11 2.89 16 4 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 5 C 0.49 17.60 6.59 87.68 0.58 18.17 16 6 O -0.59 -24.51 15.43 -3.02 -0.05 -24.55 16 7 N -0.60 -17.69 2.66 -825.24 -2.19 -19.88 16 8 C 0.10 2.36 6.06 86.38 0.52 2.88 16 9 C -0.15 -3.02 10.23 71.98 0.74 -2.29 16 10 C 0.07 1.93 5.18 86.47 0.45 2.37 16 11 C 0.03 1.04 5.39 86.24 0.47 1.50 16 12 N -0.50 -18.70 4.08 -875.45 -3.57 -22.27 16 13 C 0.09 3.79 3.04 86.30 0.26 4.06 16 14 C 0.05 2.11 1.53 -52.92 -0.08 2.03 16 15 C -0.49 -24.48 8.87 25.60 0.23 -24.26 16 16 H 0.04 2.18 7.88 -2.91 -0.02 2.16 16 17 C 0.06 3.08 3.85 84.66 0.33 3.41 16 18 N -0.88 -44.18 8.59 21.45 0.18 -44.00 16 19 Si 0.92 40.94 29.05 68.60 1.99 42.94 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 C -0.21 -8.99 9.94 30.62 0.30 -8.68 16 24 C -0.19 -7.07 7.90 30.62 0.24 -6.83 16 25 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 4.33 3.12 -2.39 -0.01 4.33 16 28 H 0.05 2.16 5.99 -2.39 -0.01 2.15 16 29 H 0.06 2.30 7.73 -2.38 -0.02 2.28 16 30 H 0.06 1.86 7.08 -2.38 -0.02 1.85 16 31 H 0.09 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.07 1.18 7.94 -2.39 -0.02 1.16 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.11 2.01 7.93 -2.38 -0.02 1.99 16 36 H 0.07 1.90 4.47 -2.39 -0.01 1.89 16 37 H 0.09 2.26 8.08 -2.38 -0.02 2.24 16 38 H 0.10 3.22 6.04 -2.39 -0.01 3.20 16 39 H 0.00 -0.19 5.65 -2.39 -0.01 -0.21 16 40 H 0.11 5.30 2.90 -2.39 -0.01 5.29 16 41 H 0.26 12.84 8.17 -92.71 -0.76 12.08 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 43 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.10 2.96 5.02 -2.39 -0.01 2.95 16 Total: -1.00 -56.82 326.60 2.26 -54.56 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.99 Total: 26.66 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 4.90 Total: -13.46 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -5.58 Total: -86.15 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.99 Total: 42.94 kcal Total: -56.82 2.26 -54.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.041 kcal (2) G-P(sol) polarization free energy of solvation -56.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds