Wall clock time and date at job start Tue Mar 31 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47100 * 119.99709 * 2 1 3 5 5 N 1.46500 * 109.46727 * 65.00391 * 4 2 1 6 6 C 1.46012 * 118.53663 * 270.01984 * 5 4 2 7 7 C 1.52988 * 110.04562 * 161.82057 * 6 5 4 8 8 N 1.47191 * 108.71541 * 50.30068 * 7 6 5 9 9 C 1.46901 * 110.99845 * 167.62601 * 8 7 6 10 10 C 1.53001 * 109.47027 * 194.28803 * 9 8 7 11 11 C 1.50692 * 115.55388 * 54.10371 * 10 9 8 12 12 H 1.08006 * 120.00204 * 215.86686 * 11 10 9 13 13 C 1.37883 * 120.00131 * 35.59111 * 11 10 9 14 14 N 1.31516 * 119.99750 * 355.41393 * 13 11 10 15 15 Si 1.86796 * 120.00246 * 175.40542 * 13 11 10 16 16 H 1.48507 * 109.46964 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46989 * 120.00098 * 15 13 11 18 18 H 1.48495 * 109.47501 * 240.00330 * 15 13 11 19 19 C 1.53006 * 117.49567 * 199.77746 * 10 9 8 20 20 C 1.53009 * 117.49689 * 268.43218 * 10 9 8 21 21 C 1.46900 * 110.17940 * 290.99139 * 8 7 6 22 22 C 1.33716 * 118.53918 * 90.00112 * 5 4 2 23 23 O 1.21277 * 118.62148 * 1.70436 * 22 5 4 24 24 H 1.09001 * 109.46737 * 59.99662 * 1 2 3 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47005 * 300.00216 * 1 2 3 27 27 H 1.09001 * 109.47179 * 240.00252 * 2 1 3 28 28 H 1.08999 * 109.47383 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47461 * 300.00324 * 3 2 1 30 30 H 1.09005 * 109.47371 * 60.00008 * 3 2 1 31 31 H 1.08999 * 109.47035 * 305.00461 * 4 2 1 32 32 H 1.08999 * 109.47187 * 184.99646 * 4 2 1 33 33 H 1.09000 * 109.37262 * 281.99521 * 6 5 4 34 34 H 1.08999 * 109.37289 * 41.75565 * 6 5 4 35 35 H 1.09003 * 109.60781 * 290.53275 * 7 6 5 36 36 H 1.08997 * 109.59442 * 170.06939 * 7 6 5 37 37 H 1.08994 * 109.47322 * 74.28414 * 9 8 7 38 38 H 1.09005 * 109.47319 * 314.28060 * 9 8 7 39 39 H 0.96994 * 119.99906 * 185.00048 * 14 13 11 40 40 H 1.09007 * 117.49480 * 214.99634 * 19 10 9 41 41 H 1.08994 * 117.50424 * 0.02562 * 19 10 9 42 42 H 1.09006 * 117.49553 * 359.97438 * 20 10 9 43 43 H 1.09001 * 117.49861 * 144.97281 * 20 10 9 44 44 H 1.08997 * 109.39118 * 170.45643 * 21 8 7 45 45 H 1.09001 * 109.38519 * 290.24648 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1905 6 6 0.3717 -2.5291 1.7688 7 6 -0.0484 -3.8961 1.2253 8 7 1.0783 -4.8311 1.3766 9 6 0.6469 -6.2166 1.1480 10 6 1.7262 -7.1766 1.6524 11 6 2.1546 -6.9790 3.0836 12 1 3.1860 -7.1328 3.3648 13 6 1.2309 -6.5963 4.0331 14 7 -0.0031 -6.3163 3.6747 15 14 1.7322 -6.4758 5.8285 16 1 3.1652 -6.8398 5.9678 17 1 1.5263 -5.0854 6.3076 18 1 0.9039 -7.4058 6.6373 19 6 1.7073 -8.6078 1.1118 20 6 2.7917 -7.6301 0.6523 21 6 2.1690 -4.4621 0.4643 22 6 2.4873 -3.0008 0.6094 23 8 3.5458 -2.5915 0.1819 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1264 -0.6443 1.2952 33 1 0.4663 -2.5846 2.8533 34 1 -0.3863 -1.7901 1.5093 35 1 -0.3096 -3.8060 0.1709 36 1 -0.9071 -4.2645 1.7867 37 1 0.4880 -6.3765 0.0816 38 1 -0.2833 -6.4010 1.6856 39 1 -0.6333 -5.9777 4.3296 40 1 2.0047 -9.4065 1.7915 41 1 0.9262 -8.8654 0.3965 42 1 2.7234 -7.2448 -0.3651 43 1 3.8026 -7.7850 1.0295 44 1 3.0548 -5.0507 0.7026 45 1 1.8656 -4.6645 -0.5628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602810598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:54 Heat of formation + Delta-G solvation = 1.681775 kcal Electronic energy + Delta-G solvation = -23670.393148 eV Core-core repulsion = 20495.943439 eV Total energy + Delta-G solvation = -3174.449709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15163 -37.41647 -36.50603 -35.47086 -33.21749 -32.02684 -29.42851 -28.01968 -27.22606 -25.63872 -25.06970 -23.72578 -21.98708 -21.11962 -20.15750 -18.91956 -18.07116 -16.57334 -16.49648 -15.78452 -15.64471 -14.76506 -14.66434 -14.19670 -14.02992 -13.87630 -13.37604 -13.34899 -12.90177 -12.65701 -12.49705 -12.23389 -12.15271 -11.78052 -11.40176 -11.33876 -11.18581 -11.04661 -10.95158 -10.94048 -10.70741 -10.60438 -10.46730 -10.42179 -9.97732 -9.54894 -9.15634 -8.81685 -8.64608 -8.31271 -8.10367 -7.32474 -5.85889 -3.93342 3.09705 3.32320 3.37662 3.40692 3.45972 4.46529 4.59542 4.81698 4.88296 5.04025 5.13051 5.15802 5.28385 5.49390 5.52364 5.58227 5.59386 5.65078 5.71352 5.76493 5.83663 5.86419 5.97748 6.05336 6.10398 6.20753 6.24476 6.26575 6.32237 6.36398 6.44516 6.56215 6.69087 6.73670 6.80742 6.93863 7.14540 7.32909 7.53948 7.80904 7.93689 8.09352 8.10928 8.52981 8.62682 9.01034 9.66957 11.10761 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.005682 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.818211 B = 4926.756148 C = 5473.540338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.114 3.886 5 N -0.599 5.599 6 C 0.115 3.885 7 C 0.044 3.956 8 N -0.481 5.481 9 C 0.107 3.893 10 C 0.061 3.939 11 C -0.468 4.468 12 H 0.054 0.946 13 C 0.086 3.914 14 N -0.876 5.876 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.207 4.207 20 C -0.219 4.219 21 C 0.042 3.958 22 C 0.528 3.472 23 O -0.566 6.566 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.022 0.978 36 H 0.099 0.901 37 H -0.015 1.015 38 H 0.125 0.875 39 H 0.255 0.745 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 10.707 -5.443 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.200 4.200 4 C -0.009 4.009 5 N -0.331 5.331 6 C -0.008 4.008 7 C -0.085 4.085 8 N -0.205 5.205 9 C -0.020 4.020 10 C 0.061 3.939 11 C -0.506 4.506 12 H 0.072 0.928 13 C -0.116 4.116 14 N -0.514 5.514 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.246 4.246 20 C -0.256 4.256 21 C -0.089 4.089 22 C 0.317 3.683 23 O -0.445 6.445 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.117 0.883 37 H 0.003 0.997 38 H 0.142 0.858 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.833 10.931 -5.057 12.372 hybrid contribution -0.049 -0.046 0.103 0.123 sum -2.882 10.884 -4.954 12.301 Atomic orbital electron populations 1.22000 0.95326 1.02092 1.01366 1.21482 0.96000 0.96215 0.99390 1.21754 1.01198 0.95527 1.01561 1.21501 1.01503 0.80829 0.97073 1.47408 1.20252 1.07527 1.57920 1.21735 0.83952 0.96196 0.98888 1.22374 0.96078 0.91974 0.98083 1.62220 1.05929 1.03101 1.49252 1.21915 1.01773 0.84834 0.93459 1.19006 0.92562 0.89494 0.92884 1.20346 0.94440 1.45771 0.89999 0.92769 1.24728 0.94701 0.94104 0.98085 1.69759 1.04082 1.44335 1.33188 0.86588 0.78538 0.77399 0.85636 1.20099 1.21204 1.21340 1.22997 1.00796 0.96853 1.03967 1.22970 0.95365 1.08372 0.98941 1.22316 0.99695 0.91274 0.95591 1.20434 0.83059 0.88621 0.76154 1.90637 1.24445 1.79257 1.50117 0.93050 0.91936 0.92718 0.91007 0.92509 0.92723 0.92706 0.90956 0.89858 0.90983 0.90805 0.96033 0.88263 0.99678 0.85789 0.93497 0.90450 0.91935 0.91835 0.90754 0.86652 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.19 37.16 0.30 -1.26 16 2 C -0.11 -1.32 3.12 -90.62 -0.28 -1.61 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 4 C 0.11 1.57 4.79 -4.04 -0.02 1.56 16 5 N -0.60 -9.78 2.67 -174.58 -0.47 -10.24 16 6 C 0.12 1.72 5.96 -4.31 -0.03 1.70 16 7 C 0.04 0.74 5.60 -3.67 -0.02 0.72 16 8 N -0.48 -9.79 4.05 -236.10 -0.96 -10.75 16 9 C 0.11 2.33 3.89 -3.82 -0.01 2.32 16 10 C 0.06 1.45 1.64 -155.66 -0.26 1.19 16 11 C -0.47 -12.28 8.74 -34.44 -0.30 -12.58 16 12 H 0.05 1.48 7.82 -52.48 -0.41 1.07 16 13 C 0.09 2.22 5.32 -17.82 -0.09 2.12 16 14 N -0.88 -22.05 10.12 55.43 0.56 -21.49 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 20 C -0.22 -4.70 8.62 -26.69 -0.23 -4.93 16 21 C 0.04 0.83 5.14 -5.19 -0.03 0.80 16 22 C 0.53 10.25 7.56 -11.67 -0.09 10.16 16 23 O -0.57 -12.27 16.30 5.56 0.09 -12.18 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.70 5.66 -51.93 -0.29 0.41 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.86 8.03 -51.93 -0.42 0.45 16 32 H 0.08 1.29 7.21 -51.93 -0.37 0.91 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.89 5.38 -51.93 -0.28 0.61 16 35 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.10 1.70 7.84 -51.93 -0.41 1.30 16 37 H -0.01 -0.31 7.90 -51.93 -0.41 -0.72 16 38 H 0.12 2.93 5.62 -51.93 -0.29 2.64 16 39 H 0.25 6.20 8.32 -40.82 -0.34 5.86 16 40 H 0.08 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.12 2.51 6.74 -51.93 -0.35 2.16 16 45 H 0.05 0.92 7.99 -51.93 -0.41 0.51 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -27.68 347.87 -9.38 -37.07 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.85 Total: 2.33 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.98 Total: -5.68 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.86 Total: -42.48 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.68 -9.38 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.748 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds