Wall clock time and date at job start Tue Mar 31 2020 02:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.53001 * 109.47100 * 119.99709 * 2 1 3 5 5 N 1.46500 * 109.46727 * 65.00391 * 4 2 1 6 6 C 1.46012 * 118.53663 * 270.01984 * 5 4 2 7 7 C 1.52988 * 110.04562 * 161.82057 * 6 5 4 8 8 N 1.47191 * 108.71541 * 50.30068 * 7 6 5 9 9 C 1.46901 * 110.99845 * 167.62601 * 8 7 6 10 10 C 1.53001 * 109.47027 * 194.28803 * 9 8 7 11 11 C 1.50692 * 115.55388 * 54.10371 * 10 9 8 12 12 H 1.08006 * 120.00204 * 215.86686 * 11 10 9 13 13 C 1.37883 * 120.00131 * 35.59111 * 11 10 9 14 14 N 1.31516 * 119.99750 * 355.41393 * 13 11 10 15 15 Si 1.86796 * 120.00246 * 175.40542 * 13 11 10 16 16 H 1.48507 * 109.46964 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46989 * 120.00098 * 15 13 11 18 18 H 1.48495 * 109.47501 * 240.00330 * 15 13 11 19 19 C 1.53006 * 117.49567 * 199.77746 * 10 9 8 20 20 C 1.53009 * 117.49689 * 268.43218 * 10 9 8 21 21 C 1.46900 * 110.17940 * 290.99139 * 8 7 6 22 22 C 1.33716 * 118.53918 * 90.00112 * 5 4 2 23 23 O 1.21277 * 118.62148 * 1.70436 * 22 5 4 24 24 H 1.09001 * 109.46737 * 59.99662 * 1 2 3 25 25 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47005 * 300.00216 * 1 2 3 27 27 H 1.09001 * 109.47179 * 240.00252 * 2 1 3 28 28 H 1.08999 * 109.47383 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47461 * 300.00324 * 3 2 1 30 30 H 1.09005 * 109.47371 * 60.00008 * 3 2 1 31 31 H 1.08999 * 109.47035 * 305.00461 * 4 2 1 32 32 H 1.08999 * 109.47187 * 184.99646 * 4 2 1 33 33 H 1.09000 * 109.37262 * 281.99521 * 6 5 4 34 34 H 1.08999 * 109.37289 * 41.75565 * 6 5 4 35 35 H 1.09003 * 109.60781 * 290.53275 * 7 6 5 36 36 H 1.08997 * 109.59442 * 170.06939 * 7 6 5 37 37 H 1.08994 * 109.47322 * 74.28414 * 9 8 7 38 38 H 1.09005 * 109.47319 * 314.28060 * 9 8 7 39 39 H 0.96994 * 119.99906 * 185.00048 * 14 13 11 40 40 H 1.09007 * 117.49480 * 214.99634 * 19 10 9 41 41 H 1.08994 * 117.50424 * 0.02562 * 19 10 9 42 42 H 1.09006 * 117.49553 * 359.97438 * 20 10 9 43 43 H 1.09001 * 117.49861 * 144.97281 * 20 10 9 44 44 H 1.08997 * 109.39118 * 170.45643 * 21 8 7 45 45 H 1.09001 * 109.38519 * 290.24648 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1905 6 6 0.3717 -2.5291 1.7688 7 6 -0.0484 -3.8961 1.2253 8 7 1.0783 -4.8311 1.3766 9 6 0.6469 -6.2166 1.1480 10 6 1.7262 -7.1766 1.6524 11 6 2.1546 -6.9790 3.0836 12 1 3.1860 -7.1328 3.3648 13 6 1.2309 -6.5963 4.0331 14 7 -0.0031 -6.3163 3.6747 15 14 1.7322 -6.4758 5.8285 16 1 3.1652 -6.8398 5.9678 17 1 1.5263 -5.0854 6.3076 18 1 0.9039 -7.4058 6.6373 19 6 1.7073 -8.6078 1.1118 20 6 2.7917 -7.6301 0.6523 21 6 2.1690 -4.4621 0.4643 22 6 2.4873 -3.0008 0.6094 23 8 3.5458 -2.5915 0.1819 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1264 -0.6443 1.2952 33 1 0.4663 -2.5846 2.8533 34 1 -0.3863 -1.7901 1.5093 35 1 -0.3096 -3.8060 0.1709 36 1 -0.9071 -4.2645 1.7867 37 1 0.4880 -6.3765 0.0816 38 1 -0.2833 -6.4010 1.6856 39 1 -0.6333 -5.9777 4.3296 40 1 2.0047 -9.4065 1.7915 41 1 0.9262 -8.8654 0.3965 42 1 2.7234 -7.2448 -0.3651 43 1 3.8026 -7.7850 1.0295 44 1 3.0548 -5.0507 0.7026 45 1 1.8656 -4.6645 -0.5628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602810598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:53 Heat of formation + Delta-G solvation = -13.202450 kcal Electronic energy + Delta-G solvation = -23671.038577 eV Core-core repulsion = 20495.943439 eV Total energy + Delta-G solvation = -3175.095138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57202 -39.06758 -37.79834 -36.93919 -34.49516 -33.97786 -30.79258 -29.50128 -28.04433 -27.45233 -26.49847 -25.16274 -23.46450 -22.84554 -21.14666 -20.75095 -19.47612 -18.25712 -17.86085 -17.39171 -16.94956 -16.54960 -15.90749 -15.69782 -15.55063 -15.34906 -14.80301 -14.72297 -14.35570 -14.01596 -13.62751 -13.54482 -13.18972 -13.14710 -13.02503 -12.82138 -12.73043 -12.57511 -12.30771 -12.22622 -12.20772 -12.11382 -11.85567 -11.69726 -11.60055 -11.30966 -10.83891 -10.64136 -10.43472 -9.96403 -9.61990 -8.87282 -7.79792 -5.92935 1.44854 1.49737 1.57520 1.57978 2.06823 2.54133 3.01472 3.32776 3.63560 3.76276 3.92024 3.97829 4.00833 4.16145 4.24762 4.32857 4.41004 4.45583 4.51597 4.61524 4.65275 4.72689 4.76257 4.82901 4.86371 4.90099 4.97303 4.98189 5.01386 5.04636 5.14177 5.18724 5.24285 5.33904 5.41111 5.44606 5.57337 5.60073 5.71579 6.10285 6.34662 6.41635 6.53213 6.64629 7.03119 7.14955 7.67304 9.13634 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.005682 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.818211 B = 4926.756148 C = 5473.540338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.110 3.890 5 N -0.592 5.592 6 C 0.119 3.881 7 C 0.044 3.956 8 N -0.500 5.500 9 C 0.119 3.881 10 C 0.036 3.964 11 C -0.492 4.492 12 H 0.030 0.970 13 C 0.058 3.942 14 N -0.876 5.876 15 Si 0.934 3.066 16 H -0.287 1.287 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.203 4.203 20 C -0.205 4.205 21 C 0.049 3.951 22 C 0.522 3.478 23 O -0.597 6.597 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.038 0.962 36 H 0.097 0.903 37 H -0.004 1.004 38 H 0.108 0.892 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.970 12.298 -5.618 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.196 4.196 4 C -0.012 4.012 5 N -0.323 5.323 6 C -0.003 4.003 7 C -0.084 4.084 8 N -0.224 5.224 9 C -0.008 4.008 10 C 0.035 3.965 11 C -0.529 4.529 12 H 0.048 0.952 13 C -0.144 4.144 14 N -0.514 5.514 15 Si 0.762 3.238 16 H -0.213 1.213 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.242 4.242 20 C -0.243 4.243 21 C -0.082 4.082 22 C 0.311 3.689 23 O -0.479 6.479 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.014 0.986 38 H 0.125 0.875 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.484 12.538 -5.222 14.303 hybrid contribution 0.458 -0.541 0.174 0.730 sum -4.026 11.998 -5.047 13.625 Atomic orbital electron populations 1.21967 0.93635 1.01928 1.02861 1.21407 0.97323 0.96882 0.96936 1.21725 1.00701 0.94207 1.02977 1.21718 1.00583 0.79578 0.99334 1.47473 1.20123 1.08273 1.56405 1.21825 0.84109 0.96318 0.98020 1.22421 0.94843 0.91979 0.99157 1.62127 1.07300 1.03115 1.49899 1.21647 1.00154 0.85425 0.93546 1.19127 0.94228 0.90872 0.92258 1.20406 0.93536 1.47010 0.91950 0.95174 1.25126 0.94979 0.94106 1.00142 1.69836 1.04002 1.43841 1.33682 0.85919 0.77540 0.77344 0.82991 1.21280 1.20892 1.20875 1.22998 1.01316 0.95916 1.03940 1.22910 0.94603 1.07547 0.99217 1.22128 0.98636 0.91387 0.96000 1.20382 0.83124 0.88808 0.76567 1.90616 1.25781 1.79673 1.51839 0.91914 0.92814 0.90941 0.93729 0.93372 0.91528 0.91041 0.88401 0.92018 0.92017 0.86917 0.94436 0.88497 0.98641 0.87468 0.93244 0.91262 0.90159 0.90168 0.91571 0.89221 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.19 71.98 0.59 -1.95 16 2 C -0.11 -2.31 3.12 -10.79 -0.03 -2.34 16 3 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 4 C 0.11 2.86 4.79 86.38 0.41 3.28 16 5 N -0.59 -18.59 2.67 -825.23 -2.20 -20.79 16 6 C 0.12 3.31 5.96 86.47 0.52 3.82 16 7 C 0.04 1.41 5.60 86.24 0.48 1.90 16 8 N -0.50 -20.06 4.05 -900.88 -3.65 -23.71 16 9 C 0.12 5.13 3.89 86.30 0.34 5.47 16 10 C 0.04 1.69 1.64 -52.92 -0.09 1.61 16 11 C -0.49 -26.19 8.74 25.60 0.22 -25.96 16 12 H 0.03 1.70 7.82 -2.91 -0.02 1.67 16 13 C 0.06 3.00 5.32 84.66 0.45 3.45 16 14 N -0.88 -43.60 10.12 21.45 0.22 -43.38 16 15 Si 0.93 42.54 29.54 68.60 2.03 44.56 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 C -0.20 -8.80 9.96 30.62 0.30 -8.49 16 20 C -0.21 -8.77 8.62 30.62 0.26 -8.51 16 21 C 0.05 1.95 5.14 85.42 0.44 2.39 16 22 C 0.52 20.25 7.56 87.68 0.66 20.91 16 23 O -0.60 -26.38 16.30 -3.02 -0.05 -26.42 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 1.02 5.66 -2.39 -0.01 1.01 16 26 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.10 2.05 8.03 -2.39 -0.02 2.03 16 32 H 0.06 1.89 7.21 -2.39 -0.02 1.87 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 2.29 5.38 -2.39 -0.01 2.28 16 35 H 0.04 1.09 8.08 -2.39 -0.02 1.07 16 36 H 0.10 3.16 7.84 -2.39 -0.02 3.14 16 37 H 0.00 -0.17 7.90 -2.39 -0.02 -0.19 16 38 H 0.11 4.99 5.62 -2.38 -0.01 4.98 16 39 H 0.26 12.27 8.32 -92.71 -0.77 11.50 16 40 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 43 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.09 3.99 6.74 -2.39 -0.02 3.98 16 45 H 0.06 2.20 7.99 -2.39 -0.02 2.18 16 Total: -1.00 -59.55 347.87 2.51 -57.04 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.95 Total: 18.84 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 5.22 Total: -6.14 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -5.64 Total: -87.88 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -59.55 2.51 -57.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602810598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.838 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds