Wall clock time and date at job start Tue Mar 31 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47436 * 2 1 4 4 C 1.53005 * 109.47194 * 120.00037 * 2 1 3 5 5 H 1.09001 * 115.54725 * 210.62533 * 4 2 1 6 6 C 1.52999 * 117.49685 * 356.33576 * 4 2 1 7 7 C 1.52992 * 60.00098 * 107.49009 * 6 4 2 8 8 H 1.09001 * 117.52080 * 107.48610 * 7 6 4 9 9 C 1.50703 * 117.49782 * 252.50729 * 7 6 4 10 10 O 1.21292 * 119.99631 * 92.53255 * 9 7 6 11 11 N 1.34770 * 120.00371 * 272.53910 * 9 7 6 12 12 C 1.46501 * 120.00355 * 180.02562 * 11 9 7 13 13 C 1.53044 * 109.46139 * 154.99916 * 12 11 9 14 14 C 1.53192 * 109.30701 * 181.38530 * 13 12 11 15 15 N 1.46927 * 108.77689 * 305.35646 * 14 13 12 16 16 C 1.36930 * 120.63290 * 233.58807 * 15 14 13 17 17 H 1.07998 * 120.00057 * 29.16929 * 16 15 14 18 18 C 1.38815 * 120.00229 * 209.44346 * 16 15 14 19 19 N 1.31617 * 119.99651 * 14.64633 * 18 16 15 20 20 Si 1.86796 * 120.00123 * 194.65216 * 18 16 15 21 21 H 1.48507 * 109.47193 * 90.00041 * 20 18 16 22 22 H 1.48502 * 109.47336 * 209.99365 * 20 18 16 23 23 H 1.48494 * 109.47194 * 330.00077 * 20 18 16 24 24 C 1.46928 * 118.73314 * 53.86809 * 15 14 13 25 25 C 1.53049 * 109.45781 * 275.06535 * 12 11 9 26 26 H 1.09002 * 109.46850 * 293.34903 * 1 2 3 27 27 H 1.08995 * 109.47198 * 53.34748 * 1 2 3 28 28 H 1.08996 * 109.47161 * 173.35074 * 1 2 3 29 29 H 1.09004 * 109.47204 * 240.00071 * 2 1 3 30 30 H 1.09002 * 109.47372 * 64.58692 * 3 2 1 31 31 H 1.08992 * 109.47443 * 184.59227 * 3 2 1 32 32 H 1.09004 * 109.47106 * 304.59142 * 3 2 1 33 33 H 1.08996 * 117.50254 * 359.97438 * 6 4 2 34 34 H 1.09004 * 117.49287 * 214.98000 * 6 4 2 35 35 H 0.97003 * 120.00058 * 359.97438 * 11 9 7 36 36 H 1.08996 * 109.46031 * 35.02286 * 12 11 9 37 37 H 1.08992 * 109.49536 * 61.43140 * 13 12 11 38 38 H 1.08997 * 109.51797 * 301.34629 * 13 12 11 39 39 H 1.09002 * 109.58133 * 185.57630 * 14 13 12 40 40 H 1.08994 * 109.70768 * 65.22136 * 14 13 12 41 41 H 0.97003 * 119.99898 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58827 * 65.92573 * 24 15 14 43 43 H 1.08999 * 109.58127 * 186.34796 * 24 15 14 44 44 H 1.09002 * 109.49676 * 298.56351 * 25 12 11 45 45 H 1.09002 * 109.49608 * 58.66005 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.9946 -0.3680 1.6393 6 6 0.9986 -1.2049 2.2604 7 6 1.7339 -2.2148 1.3772 8 1 2.4869 -2.8443 1.8514 9 6 0.9531 -2.8630 0.2630 10 8 0.9601 -2.3738 -0.8468 11 7 0.2468 -3.9862 0.4998 12 6 -0.5118 -4.6166 -0.5834 13 6 -0.6890 -6.1065 -0.2818 14 6 -1.4524 -6.7690 -1.4329 15 7 -2.7117 -6.0425 -1.6452 16 6 -3.9087 -6.7074 -1.6487 17 1 -4.0279 -7.6080 -1.0647 18 6 -4.9673 -6.2271 -2.4074 19 7 -4.7529 -5.3190 -3.3357 20 14 -6.6962 -6.8693 -2.1107 21 1 -7.3693 -6.0259 -1.0904 22 1 -7.4667 -6.8210 -3.3793 23 1 -6.6271 -8.2714 -1.6265 24 6 -2.6616 -4.5899 -1.8599 25 6 -1.8851 -3.9509 -0.6986 26 1 -0.3633 0.4073 0.9435 27 1 -0.3633 0.6134 -0.8244 28 1 -0.3633 -1.0207 -0.1190 29 1 1.8934 -0.5138 -0.8900 30 1 1.7454 1.9321 0.9282 31 1 3.1269 1.4435 -0.0823 32 1 1.6111 1.9795 -0.8460 33 1 -0.0498 -1.0089 2.0359 34 1 1.2679 -1.1697 3.3161 35 1 0.2414 -4.3776 1.3874 36 1 0.0290 -4.4979 -1.5223 37 1 -1.2514 -6.2258 0.6442 38 1 0.2893 -6.5756 -0.1764 39 1 -1.6678 -7.8069 -1.1789 40 1 -0.8517 -6.7323 -2.3416 41 1 -5.4926 -4.9831 -3.8656 42 1 -2.1563 -4.3769 -2.8019 43 1 -3.6750 -4.1895 -1.8878 44 1 -2.4363 -4.0906 0.2313 45 1 -1.7579 -2.8854 -0.8902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613877569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:42 Heat of formation + Delta-G solvation = -1.609319 kcal Electronic energy + Delta-G solvation = -22962.826068 eV Core-core repulsion = 19788.233646 eV Total energy + Delta-G solvation = -3174.592422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37274 -38.07519 -36.67352 -34.36594 -33.18552 -31.99428 -30.01724 -29.44842 -27.14499 -25.50554 -23.90027 -23.56688 -22.22744 -21.60669 -20.00657 -19.46605 -18.93145 -17.10219 -16.66892 -15.86270 -15.50795 -14.89733 -14.79979 -14.39826 -14.03346 -13.64835 -13.48877 -13.21122 -12.89040 -12.81517 -12.54913 -12.35246 -12.34585 -11.68756 -11.48938 -11.32849 -11.08520 -10.98477 -10.90815 -10.75271 -10.69332 -10.39790 -10.34381 -10.21535 -10.05010 -10.01514 -9.73428 -9.65917 -9.18592 -8.65011 -8.40958 -6.66217 -5.77462 -3.22855 2.76226 3.32954 3.38633 3.44626 3.46053 3.70999 4.49500 4.49558 4.72245 4.78599 5.00027 5.13882 5.25187 5.33195 5.36132 5.42950 5.46965 5.54411 5.63077 5.65767 5.74204 5.81184 5.85418 5.96813 5.97440 6.05760 6.10379 6.24733 6.25808 6.35666 6.43880 6.54502 6.57855 6.65147 6.66969 6.79988 6.93849 6.98752 7.39512 7.69787 7.79904 7.80317 8.46530 8.50773 9.22179 9.84627 10.41969 11.30717 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.003912 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.690530 B = 7154.974357 C = 7644.435644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C -0.144 4.144 4 C -0.111 4.111 5 H 0.108 0.892 6 C -0.164 4.164 7 C -0.190 4.190 8 H 0.122 0.878 9 C 0.539 3.461 10 O -0.529 6.529 11 N -0.722 5.722 12 C 0.151 3.849 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.174 3.826 25 C -0.145 4.145 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.342 8.004 11.553 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.202 4.202 4 C -0.130 4.130 5 H 0.126 0.874 6 C -0.201 4.201 7 C -0.211 4.211 8 H 0.140 0.860 9 C 0.325 3.675 10 O -0.406 6.406 11 N -0.372 5.372 12 C 0.048 3.952 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.203 8.400 10.604 18.903 hybrid contribution -0.849 -0.553 0.686 1.224 sum 12.354 7.847 11.290 18.484 Atomic orbital electron populations 1.22106 0.95201 1.03063 1.00461 1.20727 0.95991 0.94645 0.97256 1.21853 1.00447 0.96467 1.01406 1.22440 0.99593 0.92755 0.98215 0.87438 1.23253 0.99224 1.01262 0.96378 1.22275 1.03966 0.93897 1.01010 0.85975 1.19589 0.78871 0.80444 0.88623 1.90676 1.63313 1.62328 1.24260 1.46336 1.49665 1.27116 1.14054 1.21030 0.92288 0.92159 0.89761 1.22325 0.99773 0.94205 1.01527 1.20840 0.88210 0.95112 0.93740 1.44105 1.01053 1.02523 1.83878 1.19194 0.88485 1.09206 1.21570 0.91668 1.25107 0.99145 0.99636 0.95666 1.70013 1.30463 1.32611 1.21567 0.86270 0.84657 0.78589 0.77107 1.21449 1.21725 1.20436 1.20850 0.99771 0.82974 0.91593 1.22633 0.95119 0.98937 1.01879 0.93520 0.93076 0.91269 0.88493 0.93126 0.93103 0.92736 0.87520 0.88332 0.77248 0.90127 0.91915 0.92718 0.92413 0.96240 0.93570 0.96158 0.89225 0.92782 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.40 37.16 0.28 -1.72 16 2 C -0.07 -0.82 2.43 -90.62 -0.22 -1.04 16 3 C -0.14 -1.42 9.15 37.16 0.34 -1.08 16 4 C -0.11 -1.15 5.73 -90.62 -0.52 -1.67 16 5 H 0.11 0.92 8.07 -51.93 -0.42 0.50 16 6 C -0.16 -1.55 9.26 -26.74 -0.25 -1.80 16 7 C -0.19 -2.04 6.18 -91.78 -0.57 -2.61 16 8 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.54 7.75 6.11 -10.99 -0.07 7.68 16 10 O -0.53 -9.42 11.86 5.55 0.07 -9.35 16 11 N -0.72 -10.05 5.08 -53.76 -0.27 -10.32 16 12 C 0.15 2.61 2.41 -67.88 -0.16 2.45 16 13 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 14 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 15 N -0.59 -14.85 2.98 -172.06 -0.51 -15.37 16 16 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 17 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 18 C 0.00 0.09 4.97 -17.43 -0.09 0.00 16 19 N -0.90 -26.41 11.13 55.49 0.62 -25.79 16 20 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.17 4.26 5.31 -3.49 -0.02 4.24 16 25 C -0.15 -2.89 5.67 -26.39 -0.15 -3.04 16 26 H 0.05 0.54 6.75 -51.93 -0.35 0.19 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.08 4.93 -51.93 -0.26 0.83 16 29 H 0.10 1.42 6.45 -51.93 -0.34 1.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 1.14 5.79 -51.93 -0.30 0.83 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 4.43 8.60 -40.82 -0.35 4.08 16 36 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -30.46 344.27 -9.44 -39.89 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.75 Total: 4.19 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.74 Total: -5.11 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.17 Total: -51.48 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.46 -9.44 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.284 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds