Wall clock time and date at job start Tue Mar 31 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47436 * 2 1 4 4 C 1.53005 * 109.47194 * 120.00037 * 2 1 3 5 5 H 1.09001 * 115.54725 * 210.62533 * 4 2 1 6 6 C 1.52999 * 117.49685 * 356.33576 * 4 2 1 7 7 C 1.52992 * 60.00098 * 107.49009 * 6 4 2 8 8 H 1.09001 * 117.52080 * 107.48610 * 7 6 4 9 9 C 1.50703 * 117.49782 * 252.50729 * 7 6 4 10 10 O 1.21292 * 119.99631 * 92.53255 * 9 7 6 11 11 N 1.34770 * 120.00371 * 272.53910 * 9 7 6 12 12 C 1.46501 * 120.00355 * 180.02562 * 11 9 7 13 13 C 1.53044 * 109.46139 * 154.99916 * 12 11 9 14 14 C 1.53192 * 109.30701 * 181.38530 * 13 12 11 15 15 N 1.46927 * 108.77689 * 305.35646 * 14 13 12 16 16 C 1.36930 * 120.63290 * 233.58807 * 15 14 13 17 17 H 1.07998 * 120.00057 * 29.16929 * 16 15 14 18 18 C 1.38815 * 120.00229 * 209.44346 * 16 15 14 19 19 N 1.31617 * 119.99651 * 14.64633 * 18 16 15 20 20 Si 1.86796 * 120.00123 * 194.65216 * 18 16 15 21 21 H 1.48507 * 109.47193 * 90.00041 * 20 18 16 22 22 H 1.48502 * 109.47336 * 209.99365 * 20 18 16 23 23 H 1.48494 * 109.47194 * 330.00077 * 20 18 16 24 24 C 1.46928 * 118.73314 * 53.86809 * 15 14 13 25 25 C 1.53049 * 109.45781 * 275.06535 * 12 11 9 26 26 H 1.09002 * 109.46850 * 293.34903 * 1 2 3 27 27 H 1.08995 * 109.47198 * 53.34748 * 1 2 3 28 28 H 1.08996 * 109.47161 * 173.35074 * 1 2 3 29 29 H 1.09004 * 109.47204 * 240.00071 * 2 1 3 30 30 H 1.09002 * 109.47372 * 64.58692 * 3 2 1 31 31 H 1.08992 * 109.47443 * 184.59227 * 3 2 1 32 32 H 1.09004 * 109.47106 * 304.59142 * 3 2 1 33 33 H 1.08996 * 117.50254 * 359.97438 * 6 4 2 34 34 H 1.09004 * 117.49287 * 214.98000 * 6 4 2 35 35 H 0.97003 * 120.00058 * 359.97438 * 11 9 7 36 36 H 1.08996 * 109.46031 * 35.02286 * 12 11 9 37 37 H 1.08992 * 109.49536 * 61.43140 * 13 12 11 38 38 H 1.08997 * 109.51797 * 301.34629 * 13 12 11 39 39 H 1.09002 * 109.58133 * 185.57630 * 14 13 12 40 40 H 1.08994 * 109.70768 * 65.22136 * 14 13 12 41 41 H 0.97003 * 119.99898 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.58827 * 65.92573 * 24 15 14 43 43 H 1.08999 * 109.58127 * 186.34796 * 24 15 14 44 44 H 1.09002 * 109.49676 * 298.56351 * 25 12 11 45 45 H 1.09002 * 109.49608 * 58.66005 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.9946 -0.3680 1.6393 6 6 0.9986 -1.2049 2.2604 7 6 1.7339 -2.2148 1.3772 8 1 2.4869 -2.8443 1.8514 9 6 0.9531 -2.8630 0.2630 10 8 0.9601 -2.3738 -0.8468 11 7 0.2468 -3.9862 0.4998 12 6 -0.5118 -4.6166 -0.5834 13 6 -0.6890 -6.1065 -0.2818 14 6 -1.4524 -6.7690 -1.4329 15 7 -2.7117 -6.0425 -1.6452 16 6 -3.9087 -6.7074 -1.6487 17 1 -4.0279 -7.6080 -1.0647 18 6 -4.9673 -6.2271 -2.4074 19 7 -4.7529 -5.3190 -3.3357 20 14 -6.6962 -6.8693 -2.1107 21 1 -7.3693 -6.0259 -1.0904 22 1 -7.4667 -6.8210 -3.3793 23 1 -6.6271 -8.2714 -1.6265 24 6 -2.6616 -4.5899 -1.8599 25 6 -1.8851 -3.9509 -0.6986 26 1 -0.3633 0.4073 0.9435 27 1 -0.3633 0.6134 -0.8244 28 1 -0.3633 -1.0207 -0.1190 29 1 1.8934 -0.5138 -0.8900 30 1 1.7454 1.9321 0.9282 31 1 3.1269 1.4435 -0.0823 32 1 1.6111 1.9795 -0.8460 33 1 -0.0498 -1.0089 2.0359 34 1 1.2679 -1.1697 3.3161 35 1 0.2414 -4.3776 1.3874 36 1 0.0290 -4.4979 -1.5223 37 1 -1.2514 -6.2258 0.6442 38 1 0.2893 -6.5756 -0.1764 39 1 -1.6678 -7.8069 -1.1789 40 1 -0.8517 -6.7323 -2.3416 41 1 -5.4926 -4.9831 -3.8656 42 1 -2.1563 -4.3769 -2.8019 43 1 -3.6750 -4.1895 -1.8878 44 1 -2.4363 -4.0906 0.2313 45 1 -1.7579 -2.8854 -0.8902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613877569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:41 Heat of formation + Delta-G solvation = -19.897107 kcal Electronic energy + Delta-G solvation = -22963.619086 eV Core-core repulsion = 19788.233646 eV Total energy + Delta-G solvation = -3175.385440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46240 -39.46509 -37.96987 -35.92716 -34.26094 -33.63447 -31.74134 -31.18504 -28.09044 -27.22516 -25.27718 -24.36300 -23.92086 -23.19205 -21.29320 -20.79255 -20.04806 -18.80379 -17.93534 -17.23088 -16.68529 -16.57684 -15.91156 -15.66251 -15.39533 -15.32062 -14.97101 -14.83059 -14.29413 -14.09327 -13.94941 -13.63999 -13.21087 -13.19082 -13.00533 -12.69156 -12.62143 -12.55824 -12.17328 -12.12947 -12.02516 -11.90926 -11.83938 -11.69913 -11.48764 -11.34338 -11.20466 -10.90107 -10.60011 -10.33728 -9.91472 -8.71357 -7.88130 -5.37220 1.46995 1.48137 1.57443 1.68072 2.22529 2.50466 2.85815 3.28007 3.62099 3.67963 3.84757 3.91219 3.95989 4.08828 4.14183 4.29867 4.32736 4.37267 4.46132 4.50608 4.64644 4.78461 4.79545 4.81356 4.86326 4.89831 4.98590 5.04285 5.05759 5.09237 5.12058 5.15618 5.24637 5.30372 5.37383 5.44605 5.46157 5.61297 5.62830 5.68237 5.69639 6.37897 6.70264 7.12347 7.41164 7.82507 8.35854 9.18480 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.003912 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.690530 B = 7154.974357 C = 7644.435644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.116 4.116 5 H 0.134 0.866 6 C -0.147 4.147 7 C -0.193 4.193 8 H 0.153 0.847 9 C 0.533 3.467 10 O -0.569 6.569 11 N -0.710 5.710 12 C 0.163 3.837 13 C -0.121 4.121 14 C 0.141 3.859 15 N -0.610 5.610 16 C -0.263 4.263 17 H 0.074 0.926 18 C -0.053 4.053 19 N -0.940 5.940 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.264 1.264 24 C 0.184 3.816 25 C -0.127 4.127 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.010 0.990 41 H 0.249 0.751 42 H -0.013 1.013 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.805 7.635 14.935 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.196 4.196 4 C -0.134 4.134 5 H 0.152 0.848 6 C -0.184 4.184 7 C -0.213 4.213 8 H 0.171 0.829 9 C 0.321 3.679 10 O -0.449 6.449 11 N -0.361 5.361 12 C 0.058 3.942 13 C -0.160 4.160 14 C 0.015 3.985 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.091 0.909 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.799 3.201 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.189 1.189 24 C 0.057 3.943 25 C -0.167 4.167 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.701 8.006 14.041 21.849 hybrid contribution -1.275 -0.429 -0.431 1.412 sum 13.427 7.578 13.610 20.565 Atomic orbital electron populations 1.22062 0.96523 1.01050 1.00832 1.20645 0.94845 0.96098 0.97200 1.21798 1.01132 0.94835 1.01855 1.22536 1.01079 0.92171 0.97650 0.84826 1.23322 0.98124 0.99266 0.97733 1.22295 1.04515 0.94344 1.00177 0.82927 1.20341 0.78495 0.79951 0.89144 1.90683 1.64552 1.63236 1.26392 1.46069 1.48999 1.27130 1.13951 1.20598 0.90550 0.92874 0.90141 1.22122 1.01078 0.92988 0.99856 1.21044 0.86713 0.95730 0.95008 1.44353 1.02176 1.02757 1.84054 1.19596 0.89531 1.09243 1.20972 0.90858 1.25928 1.03010 1.00264 0.95654 1.70196 1.31168 1.34336 1.22869 0.85208 0.79758 0.78629 0.76502 1.21172 1.22386 1.18851 1.20544 0.98015 0.83630 0.92080 1.22351 0.96407 0.98176 0.99789 0.91804 0.94308 0.94073 0.91801 0.91699 0.91846 0.93456 0.89072 0.85067 0.75083 0.92794 0.90716 0.89150 0.91466 0.97220 0.94182 0.99485 0.92705 0.92254 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 7.40 71.98 0.53 -3.41 16 2 C -0.07 -1.63 2.43 -10.79 -0.03 -1.65 16 3 C -0.14 -2.52 9.15 71.98 0.66 -1.86 16 4 C -0.12 -2.05 5.73 -10.79 -0.06 -2.12 16 5 H 0.13 1.71 8.07 -2.39 -0.02 1.69 16 6 C -0.15 -2.25 9.26 30.59 0.28 -1.97 16 7 C -0.19 -3.54 6.18 -11.54 -0.07 -3.61 16 8 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 9 C 0.53 14.75 6.11 87.66 0.54 15.28 16 10 O -0.57 -20.81 11.86 -3.07 -0.04 -20.84 16 11 N -0.71 -18.49 5.08 -442.38 -2.25 -20.74 16 12 C 0.16 5.58 2.41 45.02 0.11 5.69 16 13 C -0.12 -3.76 5.55 30.67 0.17 -3.59 16 14 C 0.14 5.75 6.51 86.36 0.56 6.32 16 15 N -0.61 -31.13 2.98 -698.28 -2.08 -33.22 16 16 C -0.26 -14.53 9.58 84.04 0.81 -13.73 16 17 H 0.07 3.86 7.87 -2.91 -0.02 3.83 16 18 C -0.05 -3.03 4.97 84.86 0.42 -2.61 16 19 N -0.94 -57.32 11.13 21.65 0.24 -57.08 16 20 Si 0.97 45.19 29.58 68.60 2.03 47.22 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 C 0.18 9.46 5.31 86.50 0.46 9.92 16 25 C -0.13 -5.18 5.67 30.82 0.17 -5.01 16 26 H 0.06 1.43 6.75 -2.39 -0.02 1.42 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 1.33 4.93 -2.39 -0.01 1.31 16 29 H 0.06 1.93 6.45 -2.39 -0.02 1.92 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.72 5.79 -2.39 -0.01 1.71 16 34 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.41 7.86 8.60 -92.71 -0.80 7.07 16 36 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.05 3.18 6.06 -2.39 -0.01 3.16 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -70.13 344.27 2.63 -67.50 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.17 Total: 19.51 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.55 Total: -2.36 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.09 Total: -111.03 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.04 Total: -20.84 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.13 2.63 -67.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.605 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds