Wall clock time and date at job start Tue Mar 31 2020 02:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47059 * 2 1 4 4 C 1.52995 * 109.47131 * 119.99834 * 2 1 3 5 5 N 1.46901 * 109.47217 * 65.99137 * 4 2 1 6 6 C 1.46899 * 111.00021 * 209.35247 * 5 4 2 7 7 C 1.50695 * 109.47366 * 66.04059 * 6 5 4 8 8 H 1.08002 * 119.99894 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00099 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99857 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46785 * 90.00542 * 11 9 7 13 13 H 1.48499 * 109.47042 * 210.00192 * 11 9 7 14 14 H 1.48495 * 109.47205 * 330.00682 * 11 9 7 15 15 C 1.46894 * 111.00276 * 85.39370 * 5 4 2 16 16 C 1.50696 * 109.47305 * 287.12341 * 15 5 4 17 17 N 1.30261 * 125.62102 * 98.61750 * 16 15 5 18 18 C 1.34482 * 108.70132 * 180.02562 * 17 16 15 19 19 C 1.34332 * 107.66821 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.44236 * 179.97438 * 19 18 17 21 21 C 1.52992 * 109.46925 * 120.00037 * 20 19 18 22 22 C 1.53000 * 109.47226 * 240.00426 * 20 19 18 23 23 O 1.33967 * 125.62000 * 278.66032 * 16 15 5 24 24 H 1.08998 * 109.47149 * 300.00098 * 1 2 3 25 25 H 1.09004 * 109.47360 * 59.99903 * 1 2 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47448 * 240.00598 * 2 1 3 28 28 H 1.08997 * 109.47456 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47114 * 300.00247 * 3 2 1 30 30 H 1.08997 * 109.46783 * 59.99653 * 3 2 1 31 31 H 1.08998 * 109.47204 * 305.98653 * 4 2 1 32 32 H 1.09010 * 109.47032 * 185.98772 * 4 2 1 33 33 H 1.08999 * 109.47291 * 186.04295 * 6 5 4 34 34 H 1.08997 * 109.47068 * 306.04250 * 6 5 4 35 35 H 0.97000 * 119.99585 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47416 * 167.12153 * 15 5 4 37 37 H 1.09006 * 109.47150 * 47.12464 * 15 5 4 38 38 H 1.07996 * 126.16407 * 180.26068 * 18 17 16 39 39 H 1.09004 * 109.46613 * 0.02562 * 20 19 18 40 40 H 1.09003 * 109.47347 * 60.00644 * 21 20 19 41 41 H 1.08997 * 109.47309 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47779 * 300.00068 * 21 20 19 43 43 H 1.08998 * 109.46942 * 299.99855 * 22 20 19 44 44 H 1.08992 * 109.47195 * 60.00221 * 22 20 19 45 45 H 1.09004 * 109.46904 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6719 -2.1416 1.1792 6 6 1.4895 -2.7051 2.5235 7 6 0.2985 -2.0581 3.1821 8 1 -0.2668 -1.3040 2.6546 9 6 -0.0702 -2.4296 4.4577 10 7 0.6178 -3.3481 5.0998 11 14 -1.5462 -1.6270 5.2743 12 1 -2.7702 -2.4072 4.9609 13 1 -1.3421 -1.5959 6.7449 14 1 -1.6996 -0.2401 4.7663 15 6 2.6685 -2.9068 0.4183 16 6 2.5383 -2.5831 -1.0477 17 7 3.2780 -1.7373 -1.7065 18 6 2.8688 -1.7129 -2.9873 19 6 1.8451 -2.5748 -3.1047 20 6 1.0697 -2.8779 -4.3608 21 6 1.2013 -4.3651 -4.6949 22 6 -0.4050 -2.5319 -4.1458 23 8 1.6421 -3.1173 -1.8881 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.5918 -0.2730 2.1359 32 1 3.1247 -0.6293 1.3044 33 1 1.3235 -3.7797 2.4476 34 1 2.3817 -2.5166 3.1205 35 1 0.3586 -3.6092 5.9973 36 1 2.5021 -3.9732 0.5711 37 1 3.6689 -2.6425 0.7613 38 1 3.2900 -1.1119 -3.7796 39 1 1.4662 -2.2843 -5.1846 40 1 0.8051 -4.9590 -3.8712 41 1 0.6409 -4.5843 -5.6037 42 1 2.2520 -4.6116 -4.8481 43 1 -0.8012 -3.1258 -3.3221 44 1 -0.4987 -1.4724 -3.9079 45 1 -0.9658 -2.7508 -5.0546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:46 Heat of formation + Delta-G solvation = 9.244074 kcal Electronic energy + Delta-G solvation = -23225.839528 eV Core-core repulsion = 20051.717744 eV Total energy + Delta-G solvation = -3174.121783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.10549 -37.56945 -35.70929 -34.41540 -33.98032 -32.55605 -29.99895 -27.32881 -27.30808 -26.54810 -26.28346 -24.14885 -22.49074 -21.77968 -20.71342 -20.07491 -19.41181 -16.83797 -16.35979 -16.12448 -15.48464 -14.92265 -14.60705 -14.55661 -14.10374 -13.92100 -13.41850 -13.24975 -13.19043 -13.06810 -12.36974 -12.33926 -12.19039 -11.74181 -11.68761 -11.53128 -11.43683 -11.35407 -11.20861 -11.16912 -10.91089 -10.80036 -10.68212 -10.28695 -10.19050 -10.14296 -9.80583 -9.64599 -9.26606 -8.47099 -8.33017 -7.38535 -6.04866 -4.05502 1.72947 2.90006 2.98152 3.31745 3.37942 3.41674 4.28969 4.43800 4.58128 4.77198 4.92170 4.95489 5.19553 5.29948 5.31756 5.46012 5.51187 5.56038 5.61752 5.67436 5.70096 5.79605 5.81372 5.86892 5.99544 6.07538 6.07948 6.15448 6.18842 6.31672 6.39341 6.40898 6.52833 6.57629 6.60263 6.70532 7.02690 7.04226 7.22726 7.29222 7.77210 7.98136 8.07456 8.14630 8.46407 9.02163 9.58517 11.06048 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.004824 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.862031 B = 5802.496698 C = 6055.648917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.139 4.139 4 C 0.067 3.933 5 N -0.530 5.530 6 C 0.195 3.805 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.140 3.860 16 C 0.227 3.773 17 N -0.487 5.487 18 C -0.045 4.045 19 C -0.052 4.052 20 C -0.004 4.004 21 C -0.149 4.149 22 C -0.149 4.149 23 O -0.186 6.186 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.026 0.974 33 H 0.033 0.967 34 H -0.005 1.005 35 H 0.261 0.739 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.175 0.825 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 1.996 -17.687 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 C -0.197 4.197 4 C -0.062 4.062 5 N -0.255 5.255 6 C 0.071 3.929 7 C -0.544 4.544 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.198 1.198 15 C 0.010 3.990 16 C 0.021 3.979 17 N -0.216 5.216 18 C -0.183 4.183 19 C -0.107 4.107 20 C -0.023 4.023 21 C -0.206 4.206 22 C -0.207 4.207 23 O -0.072 6.072 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.192 0.808 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.305 2.154 -17.436 17.719 hybrid contribution -0.519 0.149 0.594 0.803 sum 1.786 2.303 -16.842 17.092 Atomic orbital electron populations 1.21664 0.95396 1.02351 0.99477 1.21371 0.96113 0.95012 0.99696 1.21745 1.00439 0.96853 1.00687 1.22164 0.96979 0.88622 0.98391 1.61995 1.41766 1.01869 1.19867 1.19791 0.96401 0.95618 0.81106 1.21134 1.12152 1.22161 0.98907 0.91540 1.24957 0.96995 0.95282 0.97218 1.69949 1.39865 1.30953 1.13015 0.86519 0.82863 0.79828 0.78353 1.20655 1.21347 1.19830 1.20530 0.96659 1.00341 0.81449 1.26440 0.85221 0.91233 0.95028 1.70473 1.27940 1.18957 1.04272 1.22944 0.98061 1.02483 0.94837 1.23291 1.01110 0.99889 0.86367 1.19650 0.94912 0.98088 0.89667 1.21874 1.02172 0.94538 1.02029 1.21872 0.94024 1.02390 1.02376 1.84419 1.49652 1.55362 1.17736 0.93286 0.95063 0.91510 0.90516 0.93257 0.93708 0.93152 0.89623 0.95551 0.94919 0.98669 0.92908 0.88581 0.91017 0.80810 0.88455 0.91909 0.91770 0.92371 0.91742 0.92146 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.09 37.16 0.34 -2.05 16 2 C -0.10 -1.84 2.86 -90.62 -0.26 -2.10 16 3 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 4 C 0.07 1.33 4.15 -3.83 -0.02 1.31 16 5 N -0.53 -11.17 3.89 -237.53 -0.92 -12.10 16 6 C 0.20 4.87 4.69 -4.98 -0.02 4.85 16 7 C -0.50 -13.72 8.14 -34.44 -0.28 -14.00 16 8 H 0.07 1.80 7.47 -52.49 -0.39 1.41 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 11 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.14 2.55 5.58 -4.98 -0.03 2.52 16 16 C 0.23 3.98 5.89 -12.95 -0.08 3.90 16 17 N -0.49 -8.21 9.65 -11.10 -0.11 -8.32 16 18 C -0.04 -0.63 11.49 -17.77 -0.20 -0.83 16 19 C -0.05 -0.72 5.89 -35.69 -0.21 -0.93 16 20 C 0.00 -0.04 3.33 -91.78 -0.31 -0.35 16 21 C -0.15 -1.35 9.17 37.15 0.34 -1.00 16 22 C -0.15 -1.49 9.18 37.16 0.34 -1.15 16 23 O -0.19 -3.14 10.78 5.36 0.06 -3.09 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.35 7.78 -51.93 -0.40 0.94 16 27 H 0.08 1.40 3.76 -51.93 -0.19 1.21 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.89 6.62 -51.93 -0.34 1.55 16 32 H 0.03 0.51 7.59 -51.92 -0.39 0.12 16 33 H 0.03 0.86 7.85 -51.93 -0.41 0.45 16 34 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.10 1.66 7.79 -51.93 -0.40 1.26 16 37 H 0.07 1.25 7.72 -51.93 -0.40 0.85 16 38 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -29.62 361.31 -7.95 -37.57 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.99 Total: -0.37 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.14 Total: -10.18 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.29 Total: -45.77 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: 0.06 Total: -3.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.62 -7.95 -37.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.812 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds