Wall clock time and date at job start Tue Mar 31 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47059 * 2 1 4 4 C 1.52995 * 109.47131 * 119.99834 * 2 1 3 5 5 N 1.46901 * 109.47217 * 65.99137 * 4 2 1 6 6 C 1.46899 * 111.00021 * 209.35247 * 5 4 2 7 7 C 1.50695 * 109.47366 * 66.04059 * 6 5 4 8 8 H 1.08002 * 119.99894 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00099 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99857 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46785 * 90.00542 * 11 9 7 13 13 H 1.48499 * 109.47042 * 210.00192 * 11 9 7 14 14 H 1.48495 * 109.47205 * 330.00682 * 11 9 7 15 15 C 1.46894 * 111.00276 * 85.39370 * 5 4 2 16 16 C 1.50696 * 109.47305 * 287.12341 * 15 5 4 17 17 N 1.30261 * 125.62102 * 98.61750 * 16 15 5 18 18 C 1.34482 * 108.70132 * 180.02562 * 17 16 15 19 19 C 1.34332 * 107.66821 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.44236 * 179.97438 * 19 18 17 21 21 C 1.52992 * 109.46925 * 120.00037 * 20 19 18 22 22 C 1.53000 * 109.47226 * 240.00426 * 20 19 18 23 23 O 1.33967 * 125.62000 * 278.66032 * 16 15 5 24 24 H 1.08998 * 109.47149 * 300.00098 * 1 2 3 25 25 H 1.09004 * 109.47360 * 59.99903 * 1 2 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47448 * 240.00598 * 2 1 3 28 28 H 1.08997 * 109.47456 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47114 * 300.00247 * 3 2 1 30 30 H 1.08997 * 109.46783 * 59.99653 * 3 2 1 31 31 H 1.08998 * 109.47204 * 305.98653 * 4 2 1 32 32 H 1.09010 * 109.47032 * 185.98772 * 4 2 1 33 33 H 1.08999 * 109.47291 * 186.04295 * 6 5 4 34 34 H 1.08997 * 109.47068 * 306.04250 * 6 5 4 35 35 H 0.97000 * 119.99585 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47416 * 167.12153 * 15 5 4 37 37 H 1.09006 * 109.47150 * 47.12464 * 15 5 4 38 38 H 1.07996 * 126.16407 * 180.26068 * 18 17 16 39 39 H 1.09004 * 109.46613 * 0.02562 * 20 19 18 40 40 H 1.09003 * 109.47347 * 60.00644 * 21 20 19 41 41 H 1.08997 * 109.47309 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47779 * 300.00068 * 21 20 19 43 43 H 1.08998 * 109.46942 * 299.99855 * 22 20 19 44 44 H 1.08992 * 109.47195 * 60.00221 * 22 20 19 45 45 H 1.09004 * 109.46904 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6719 -2.1416 1.1792 6 6 1.4895 -2.7051 2.5235 7 6 0.2985 -2.0581 3.1821 8 1 -0.2668 -1.3040 2.6546 9 6 -0.0702 -2.4296 4.4577 10 7 0.6178 -3.3481 5.0998 11 14 -1.5462 -1.6270 5.2743 12 1 -2.7702 -2.4072 4.9609 13 1 -1.3421 -1.5959 6.7449 14 1 -1.6996 -0.2401 4.7663 15 6 2.6685 -2.9068 0.4183 16 6 2.5383 -2.5831 -1.0477 17 7 3.2780 -1.7373 -1.7065 18 6 2.8688 -1.7129 -2.9873 19 6 1.8451 -2.5748 -3.1047 20 6 1.0697 -2.8779 -4.3608 21 6 1.2013 -4.3651 -4.6949 22 6 -0.4050 -2.5319 -4.1458 23 8 1.6421 -3.1173 -1.8881 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.5918 -0.2730 2.1359 32 1 3.1247 -0.6293 1.3044 33 1 1.3235 -3.7797 2.4476 34 1 2.3817 -2.5166 3.1205 35 1 0.3586 -3.6092 5.9973 36 1 2.5021 -3.9732 0.5711 37 1 3.6689 -2.6425 0.7613 38 1 3.2900 -1.1119 -3.7796 39 1 1.4662 -2.2843 -5.1846 40 1 0.8051 -4.9590 -3.8712 41 1 0.6409 -4.5843 -5.6037 42 1 2.2520 -4.6116 -4.8481 43 1 -0.8012 -3.1258 -3.3221 44 1 -0.4987 -1.4724 -3.9079 45 1 -0.9658 -2.7508 -5.0546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739914752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:45 Heat of formation + Delta-G solvation = -8.896365 kcal Electronic energy + Delta-G solvation = -23226.626156 eV Core-core repulsion = 20051.717744 eV Total energy + Delta-G solvation = -3174.908412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.32544 -39.18983 -36.57546 -35.78362 -35.46885 -34.54205 -31.42966 -29.04513 -28.06871 -27.91953 -27.77730 -25.90490 -23.62876 -23.22440 -22.26320 -21.18055 -20.90941 -18.57962 -17.81643 -17.55176 -16.77888 -16.51968 -16.05293 -15.79211 -15.66727 -15.20234 -14.99370 -14.50729 -14.21168 -14.15937 -14.04821 -13.80590 -13.47884 -13.11812 -13.06679 -12.95320 -12.76450 -12.63808 -12.53349 -12.50204 -12.34785 -12.15443 -12.02454 -11.94461 -11.74614 -11.47300 -11.39741 -11.38344 -11.02678 -10.60025 -9.52124 -9.13448 -8.18973 -6.26914 0.52542 1.41621 1.42153 1.53021 1.70254 1.80661 2.41259 3.01848 3.14393 3.39425 3.67991 3.94025 4.02890 4.09287 4.15672 4.20310 4.28108 4.37829 4.41329 4.48184 4.63377 4.75788 4.81027 4.82494 4.88186 4.89711 4.92721 4.94039 5.03109 5.04909 5.10604 5.19711 5.20262 5.22738 5.30660 5.32222 5.38352 5.40462 5.54581 5.61024 5.68592 6.03371 6.26973 6.51828 6.84437 6.88030 7.41543 8.92108 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.004824 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.862031 B = 5802.496698 C = 6055.648917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C -0.134 4.134 4 C 0.072 3.928 5 N -0.533 5.533 6 C 0.210 3.790 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.142 3.858 16 C 0.204 3.796 17 N -0.492 5.492 18 C -0.054 4.054 19 C -0.045 4.045 20 C -0.005 4.005 21 C -0.146 4.146 22 C -0.148 4.148 23 O -0.205 6.205 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.012 0.988 34 H -0.028 1.028 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.209 0.791 39 H 0.132 0.868 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 3.369 -20.191 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.117 4.117 3 C -0.191 4.191 4 C -0.056 4.056 5 N -0.258 5.258 6 C 0.085 3.915 7 C -0.554 4.554 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.787 3.213 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.191 1.191 15 C 0.012 3.988 16 C -0.002 4.002 17 N -0.223 5.223 18 C -0.193 4.193 19 C -0.099 4.099 20 C -0.023 4.023 21 C -0.204 4.204 22 C -0.205 4.205 23 O -0.091 6.091 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.030 0.970 34 H -0.011 1.011 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.225 0.775 39 H 0.150 0.850 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.753 3.528 -19.960 20.345 hybrid contribution -0.316 -0.306 1.245 1.320 sum 1.437 3.222 -18.716 19.045 Atomic orbital electron populations 1.21572 0.95602 1.00786 1.00180 1.21344 0.95839 0.96330 0.98228 1.21691 1.00674 0.95068 1.01698 1.22119 0.96842 0.87938 0.98667 1.61913 1.43521 1.02697 1.17695 1.19432 0.94825 0.94363 0.82892 1.21392 1.12633 1.22048 0.99315 0.91865 1.25788 0.99775 0.95772 0.97845 1.70065 1.41530 1.32265 1.13428 0.85489 0.79339 0.79105 0.77351 1.20055 1.20802 1.19052 1.20429 0.96039 1.00008 0.82276 1.25954 0.86680 0.92934 0.94681 1.70432 1.27815 1.18412 1.05676 1.23510 0.98230 1.03052 0.94469 1.24162 1.00856 0.98592 0.86255 1.19957 0.94465 0.99272 0.88601 1.21865 1.02636 0.93495 1.02376 1.21864 0.94316 1.01510 1.02791 1.84409 1.49732 1.55884 1.19033 0.94129 0.92690 0.94173 0.90431 0.92862 0.91733 0.93092 0.92150 0.95443 0.97033 1.01065 0.92734 0.88551 0.90534 0.77454 0.85041 0.94044 0.89159 0.92163 0.94262 0.92689 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 9.09 71.98 0.65 -3.78 16 2 C -0.10 -3.45 2.86 -10.79 -0.03 -3.48 16 3 C -0.13 -3.91 9.19 71.98 0.66 -3.24 16 4 C 0.07 2.95 4.15 86.30 0.36 3.31 16 5 N -0.53 -23.37 3.89 -905.40 -3.52 -26.89 16 6 C 0.21 11.04 4.69 85.56 0.40 11.44 16 7 C -0.52 -28.87 8.14 25.60 0.21 -28.66 16 8 H 0.06 3.52 7.47 -2.91 -0.02 3.49 16 9 C 0.01 0.36 5.46 84.66 0.46 0.82 16 10 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 11 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.14 5.36 5.58 85.56 0.48 5.84 16 16 C 0.20 7.14 5.89 88.34 0.52 7.66 16 17 N -0.49 -16.06 9.65 -303.83 -2.93 -18.99 16 18 C -0.05 -1.40 11.49 83.39 0.96 -0.44 16 19 C -0.05 -1.16 5.89 24.79 0.15 -1.02 16 20 C 0.00 -0.08 3.33 -11.54 -0.04 -0.12 16 21 C -0.15 -2.29 9.17 71.98 0.66 -1.63 16 22 C -0.15 -2.61 9.18 71.98 0.66 -1.95 16 23 O -0.20 -6.91 10.78 -3.74 -0.04 -6.95 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.63 7.78 -2.39 -0.02 1.61 16 27 H 0.08 2.76 3.76 -2.39 -0.01 2.75 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 2.75 6.62 -2.39 -0.02 2.73 16 32 H 0.03 1.09 7.59 -2.38 -0.02 1.08 16 33 H 0.01 0.65 7.85 -2.39 -0.02 0.63 16 34 H -0.03 -1.59 8.12 -2.39 -0.02 -1.61 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.10 3.54 7.79 -2.39 -0.02 3.52 16 37 H 0.08 2.78 7.72 -2.38 -0.02 2.76 16 38 H 0.21 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.13 1.41 8.11 -2.38 -0.02 1.39 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -65.22 361.31 2.85 -62.36 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.94 Total: 14.53 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 6.10 Total: -15.25 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -6.17 Total: -101.09 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.04 Total: -6.95 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.22 2.85 -62.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.467 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds