Wall clock time and date at job start Tue Mar 31 2020 02:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32995 * 119.99870 * 2 1 4 4 C 1.47098 * 119.99653 * 174.42331 * 3 2 1 5 5 O 1.21609 * 120.00226 * 359.26429 * 4 3 2 6 6 N 1.34780 * 119.99490 * 179.26916 * 4 3 2 7 7 C 1.46967 * 120.59130 * 185.72294 * 6 4 3 8 8 C 1.53372 * 108.63549 * 235.24988 * 7 6 4 9 9 N 1.46964 * 108.63201 * 310.57050 * 8 7 6 10 10 C 1.36938 * 120.59671 * 235.20173 * 9 8 7 11 11 H 1.07997 * 119.99760 * 139.06602 * 10 9 8 12 12 C 1.38805 * 119.99929 * 319.34134 * 10 9 8 13 13 N 1.31621 * 119.99679 * 171.00269 * 12 10 9 14 14 Si 1.86801 * 120.00284 * 350.99741 * 12 10 9 15 15 H 1.48497 * 109.46931 * 85.78423 * 14 12 10 16 16 H 1.48500 * 109.47291 * 205.78263 * 14 12 10 17 17 H 1.48504 * 109.47090 * 325.78462 * 14 12 10 18 18 C 1.46971 * 118.81078 * 55.48572 * 9 8 7 19 19 C 1.46965 * 120.59652 * 5.74636 * 6 4 3 20 20 C 1.50702 * 119.99865 * 179.97438 * 2 1 3 21 21 C 1.52998 * 109.46839 * 246.67723 * 20 2 1 22 22 C 1.52994 * 109.47168 * 6.68166 * 20 2 1 23 23 C 1.53001 * 109.46599 * 126.68034 * 20 2 1 24 24 H 1.09003 * 109.46993 * 90.00247 * 1 2 3 25 25 H 1.08997 * 109.47097 * 210.00025 * 1 2 3 26 26 H 1.08997 * 109.46857 * 330.00135 * 1 2 3 27 27 H 1.07996 * 119.99977 * 354.41888 * 3 2 1 28 28 H 1.08999 * 109.60986 * 115.50209 * 7 6 4 29 29 H 1.09004 * 109.61214 * 354.99061 * 7 6 4 30 30 H 1.09008 * 109.60819 * 190.83427 * 8 7 6 31 31 H 1.08992 * 109.61413 * 70.32088 * 8 7 6 32 32 H 0.97004 * 119.99865 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.60966 * 64.25872 * 18 9 8 34 34 H 1.08994 * 109.60946 * 184.77506 * 18 9 8 35 35 H 1.08999 * 109.60858 * 244.49503 * 19 6 4 36 36 H 1.08994 * 109.60551 * 5.00534 * 19 6 4 37 37 H 1.08998 * 109.46798 * 98.21088 * 21 20 2 38 38 H 1.08999 * 109.46794 * 218.20689 * 21 20 2 39 39 H 1.08997 * 109.47834 * 338.20938 * 21 20 2 40 40 H 1.09007 * 109.47585 * 59.99771 * 22 20 2 41 41 H 1.09001 * 109.47185 * 179.97438 * 22 20 2 42 42 H 1.09004 * 109.47206 * 299.99883 * 22 20 2 43 43 H 1.08996 * 109.47327 * 28.23469 * 23 20 2 44 44 H 1.09005 * 109.46698 * 148.23444 * 23 20 2 45 45 H 1.09002 * 109.47255 * 268.22941 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6378 1.1547 0.1238 5 8 4.2404 0.1048 0.2396 6 7 4.3129 2.3212 0.1090 7 6 5.7825 2.3348 0.1056 8 6 6.2674 3.1813 1.2890 9 7 5.5473 4.4623 1.2764 10 6 6.2333 5.6474 1.2623 11 1 5.8911 6.4620 0.6412 12 6 7.3715 5.7998 2.0419 13 7 8.1296 6.8661 1.8982 14 14 7.8274 4.4916 3.2950 15 1 8.6181 3.4243 2.6310 16 1 8.6360 5.1049 4.3791 17 1 6.5905 3.9055 3.8711 18 6 4.0777 4.4488 1.2855 19 6 3.5926 3.6022 0.0964 20 6 2.2605 -1.3051 0.0006 21 6 3.0101 -1.4606 1.3253 22 6 1.2748 -2.4632 -0.1667 23 6 3.2617 -1.3164 -1.1563 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6358 2.0848 -0.0910 28 1 6.1421 2.7696 -0.8269 29 1 6.1580 1.3165 0.2061 30 1 7.3382 3.3627 1.1946 31 1 6.0638 2.6563 2.2222 32 1 8.9249 6.9728 2.4433 33 1 3.7217 4.0119 2.2184 34 1 3.7019 5.4674 1.1887 35 1 3.7964 4.1273 -0.8368 36 1 2.5220 3.4208 0.1908 37 1 2.4316 -2.0939 1.9979 38 1 3.9819 -1.9186 1.1412 39 1 3.1508 -0.4803 1.7805 40 1 0.7407 -2.3524 -1.1105 41 1 1.8198 -3.4071 -0.1668 42 1 0.5615 -2.4551 0.6575 43 1 3.5665 -0.2947 -1.3831 44 1 4.1365 -1.9023 -0.8740 45 1 2.7956 -1.7603 -2.0360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744554117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:19 Heat of formation + Delta-G solvation = 37.332738 kcal Electronic energy + Delta-G solvation = -23522.936482 eV Core-core repulsion = 20350.032714 eV Total energy + Delta-G solvation = -3172.903768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55434 -38.14424 -36.37293 -34.03681 -32.56109 -31.44338 -30.83060 -28.85208 -27.38409 -27.06883 -26.02162 -23.58312 -23.40971 -21.91271 -20.83897 -19.16676 -17.48734 -17.04141 -16.44004 -15.73893 -15.36669 -14.93426 -14.43387 -14.28903 -14.25735 -14.21106 -13.74019 -13.31534 -13.22209 -12.86494 -12.63632 -12.59338 -12.54301 -12.05199 -11.91714 -11.81651 -11.69683 -11.02981 -10.92898 -10.85828 -10.74060 -10.62701 -10.47182 -10.42237 -10.26680 -9.99555 -9.67110 -9.13153 -8.96952 -8.70459 -8.13638 -6.78639 -6.01446 -3.55217 1.45249 3.28650 3.39075 3.44892 3.48140 3.55103 4.46866 4.54263 4.61496 4.87518 4.99275 5.08316 5.25653 5.26084 5.32085 5.36709 5.42698 5.59899 5.60956 5.65630 5.66315 5.77049 5.81220 5.88451 5.95088 5.97314 6.00198 6.07489 6.15426 6.23315 6.26228 6.29712 6.44033 6.48512 6.53939 6.55046 6.61705 6.70843 6.73516 7.01484 7.86441 8.01633 8.31971 8.55781 8.86887 9.62861 10.05935 11.13564 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.004542 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.098742 B = 6163.618192 C = 6524.893081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.028 4.028 3 C -0.227 4.227 4 C 0.529 3.471 5 O -0.532 6.532 6 N -0.597 5.597 7 C 0.098 3.902 8 C 0.113 3.887 9 N -0.606 5.606 10 C -0.270 4.270 11 H 0.082 0.918 12 C 0.034 3.966 13 N -0.910 5.910 14 Si 0.893 3.107 15 H -0.284 1.284 16 H -0.301 1.301 17 H -0.271 1.271 18 C 0.133 3.867 19 C 0.088 3.912 20 C -0.029 4.029 21 C -0.106 4.106 22 C -0.143 4.143 23 C -0.115 4.115 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.021 -14.687 -4.627 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.030 4.030 3 C -0.248 4.248 4 C 0.321 3.679 5 O -0.413 6.413 6 N -0.329 5.329 7 C -0.026 4.026 8 C -0.013 4.013 9 N -0.331 5.331 10 C -0.398 4.398 11 H 0.099 0.901 12 C -0.166 4.166 13 N -0.551 5.551 14 Si 0.723 3.277 15 H -0.211 1.211 16 H -0.229 1.229 17 H -0.196 1.196 18 C 0.007 3.993 19 C -0.036 4.036 20 C -0.029 4.029 21 C -0.163 4.163 22 C -0.200 4.200 23 C -0.172 4.172 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -14.521 -15.081 -4.503 21.414 hybrid contribution 0.380 -0.361 0.706 0.879 sum -14.141 -15.441 -3.797 21.280 Atomic orbital electron populations 1.21054 0.91507 1.03233 1.02646 1.22587 0.95440 0.94587 0.90427 1.22479 0.93870 0.98595 1.09843 1.18386 0.88218 0.83243 0.78007 1.90875 1.71010 1.29697 1.49681 1.47898 1.07237 1.05734 1.72035 1.22162 0.78964 1.01158 1.00299 1.21768 0.97407 0.87264 0.94883 1.44215 1.00227 1.01682 1.86957 1.18839 1.08379 0.91081 1.21518 0.90088 1.25587 0.97925 0.96080 0.97034 1.69758 1.15598 1.28246 1.41524 0.86787 0.78079 0.81062 0.81777 1.21099 1.22930 1.19618 1.21447 0.85495 0.98314 0.94067 1.22501 0.95584 0.84482 1.01053 1.19600 0.94488 0.90916 0.97920 1.21862 0.98969 1.01379 0.94061 1.22084 0.98703 0.98091 1.01122 1.22150 0.97344 1.03203 0.94504 0.90674 0.90630 0.91319 0.85514 0.91533 0.89815 0.90213 0.95339 0.92564 0.95550 0.90592 0.91454 0.90431 0.95298 0.91993 0.92233 0.92849 0.92580 0.92652 0.91110 0.92363 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.21 36.01 0.33 -0.71 16 2 C -0.03 -0.32 4.92 -101.16 -0.50 -0.82 16 3 C -0.23 -2.92 8.36 -37.81 -0.32 -3.24 16 4 C 0.53 8.45 5.76 -12.66 -0.07 8.38 16 5 O -0.53 -9.13 7.75 5.27 0.04 -9.09 16 6 N -0.60 -10.15 2.95 -173.61 -0.51 -10.66 16 7 C 0.10 1.83 6.60 -3.60 -0.02 1.81 16 8 C 0.11 2.47 4.35 -3.60 -0.02 2.46 16 9 N -0.61 -14.15 2.58 -171.77 -0.44 -14.59 16 10 C -0.27 -7.38 9.96 -15.06 -0.15 -7.53 16 11 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 12 C 0.03 0.97 5.36 -17.43 -0.09 0.88 16 13 N -0.91 -27.54 13.97 55.49 0.78 -26.76 16 14 Si 0.89 22.54 24.40 -169.99 -4.15 18.39 16 15 H -0.28 -6.90 6.60 56.52 0.37 -6.53 16 16 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 17 H -0.27 -6.85 6.72 56.52 0.38 -6.47 16 18 C 0.13 2.53 6.70 -3.36 -0.02 2.51 16 19 C 0.09 1.37 6.50 -3.36 -0.02 1.35 16 20 C -0.03 -0.35 0.75 -155.66 -0.12 -0.47 16 21 C -0.11 -1.43 7.63 37.16 0.28 -1.15 16 22 C -0.14 -1.34 6.98 37.15 0.26 -1.08 16 23 C -0.12 -1.53 7.50 37.16 0.28 -1.25 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.55 6.05 -51.93 -0.31 0.24 16 26 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 27 H 0.13 1.39 5.94 -52.49 -0.31 1.08 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 30 H 0.08 1.86 5.20 -51.92 -0.27 1.59 16 31 H 0.03 0.65 6.99 -51.93 -0.36 0.29 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.96 5.37 -51.93 -0.28 0.68 16 37 H 0.03 0.34 7.72 -51.93 -0.40 -0.06 16 38 H 0.06 0.90 6.77 -51.93 -0.35 0.55 16 39 H 0.06 0.93 5.76 -51.93 -0.30 0.63 16 40 H 0.05 0.45 7.96 -51.92 -0.41 0.04 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.46 6.72 -51.93 -0.35 0.11 16 43 H 0.07 1.07 4.68 -51.96 -0.24 0.83 16 44 H 0.06 0.82 7.06 -51.93 -0.37 0.45 16 45 H 0.02 0.29 7.79 -51.93 -0.40 -0.11 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -30.64 326.70 -6.82 -37.46 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.28 Total: -0.80 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.18 Total: 1.13 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.18 Total: -52.01 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.04 Total: -9.09 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.15 Total: 18.39 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.64 -6.82 -37.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744554117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.792 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds