Wall clock time and date at job start Tue Mar 31 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32995 * 119.99870 * 2 1 4 4 C 1.47098 * 119.99653 * 174.42331 * 3 2 1 5 5 O 1.21609 * 120.00226 * 359.26429 * 4 3 2 6 6 N 1.34780 * 119.99490 * 179.26916 * 4 3 2 7 7 C 1.46967 * 120.59130 * 185.72294 * 6 4 3 8 8 C 1.53372 * 108.63549 * 235.24988 * 7 6 4 9 9 N 1.46964 * 108.63201 * 310.57050 * 8 7 6 10 10 C 1.36938 * 120.59671 * 235.20173 * 9 8 7 11 11 H 1.07997 * 119.99760 * 139.06602 * 10 9 8 12 12 C 1.38805 * 119.99929 * 319.34134 * 10 9 8 13 13 N 1.31621 * 119.99679 * 171.00269 * 12 10 9 14 14 Si 1.86801 * 120.00284 * 350.99741 * 12 10 9 15 15 H 1.48497 * 109.46931 * 85.78423 * 14 12 10 16 16 H 1.48500 * 109.47291 * 205.78263 * 14 12 10 17 17 H 1.48504 * 109.47090 * 325.78462 * 14 12 10 18 18 C 1.46971 * 118.81078 * 55.48572 * 9 8 7 19 19 C 1.46965 * 120.59652 * 5.74636 * 6 4 3 20 20 C 1.50702 * 119.99865 * 179.97438 * 2 1 3 21 21 C 1.52998 * 109.46839 * 246.67723 * 20 2 1 22 22 C 1.52994 * 109.47168 * 6.68166 * 20 2 1 23 23 C 1.53001 * 109.46599 * 126.68034 * 20 2 1 24 24 H 1.09003 * 109.46993 * 90.00247 * 1 2 3 25 25 H 1.08997 * 109.47097 * 210.00025 * 1 2 3 26 26 H 1.08997 * 109.46857 * 330.00135 * 1 2 3 27 27 H 1.07996 * 119.99977 * 354.41888 * 3 2 1 28 28 H 1.08999 * 109.60986 * 115.50209 * 7 6 4 29 29 H 1.09004 * 109.61214 * 354.99061 * 7 6 4 30 30 H 1.09008 * 109.60819 * 190.83427 * 8 7 6 31 31 H 1.08992 * 109.61413 * 70.32088 * 8 7 6 32 32 H 0.97004 * 119.99865 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.60966 * 64.25872 * 18 9 8 34 34 H 1.08994 * 109.60946 * 184.77506 * 18 9 8 35 35 H 1.08999 * 109.60858 * 244.49503 * 19 6 4 36 36 H 1.08994 * 109.60551 * 5.00534 * 19 6 4 37 37 H 1.08998 * 109.46798 * 98.21088 * 21 20 2 38 38 H 1.08999 * 109.46794 * 218.20689 * 21 20 2 39 39 H 1.08997 * 109.47834 * 338.20938 * 21 20 2 40 40 H 1.09007 * 109.47585 * 59.99771 * 22 20 2 41 41 H 1.09001 * 109.47185 * 179.97438 * 22 20 2 42 42 H 1.09004 * 109.47206 * 299.99883 * 22 20 2 43 43 H 1.08996 * 109.47327 * 28.23469 * 23 20 2 44 44 H 1.09005 * 109.46698 * 148.23444 * 23 20 2 45 45 H 1.09002 * 109.47255 * 268.22941 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6378 1.1547 0.1238 5 8 4.2404 0.1048 0.2396 6 7 4.3129 2.3212 0.1090 7 6 5.7825 2.3348 0.1056 8 6 6.2674 3.1813 1.2890 9 7 5.5473 4.4623 1.2764 10 6 6.2333 5.6474 1.2623 11 1 5.8911 6.4620 0.6412 12 6 7.3715 5.7998 2.0419 13 7 8.1296 6.8661 1.8982 14 14 7.8274 4.4916 3.2950 15 1 8.6181 3.4243 2.6310 16 1 8.6360 5.1049 4.3791 17 1 6.5905 3.9055 3.8711 18 6 4.0777 4.4488 1.2855 19 6 3.5926 3.6022 0.0964 20 6 2.2605 -1.3051 0.0006 21 6 3.0101 -1.4606 1.3253 22 6 1.2748 -2.4632 -0.1667 23 6 3.2617 -1.3164 -1.1563 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6358 2.0848 -0.0910 28 1 6.1421 2.7696 -0.8269 29 1 6.1580 1.3165 0.2061 30 1 7.3382 3.3627 1.1946 31 1 6.0638 2.6563 2.2222 32 1 8.9249 6.9728 2.4433 33 1 3.7217 4.0119 2.2184 34 1 3.7019 5.4674 1.1887 35 1 3.7964 4.1273 -0.8368 36 1 2.5220 3.4208 0.1908 37 1 2.4316 -2.0939 1.9979 38 1 3.9819 -1.9186 1.1412 39 1 3.1508 -0.4803 1.7805 40 1 0.7407 -2.3524 -1.1105 41 1 1.8198 -3.4071 -0.1668 42 1 0.5615 -2.4551 0.6575 43 1 3.5665 -0.2947 -1.3831 44 1 4.1365 -1.9023 -0.8740 45 1 2.7956 -1.7603 -2.0360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744554117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:18 Heat of formation + Delta-G solvation = 18.828106 kcal Electronic energy + Delta-G solvation = -23523.738903 eV Core-core repulsion = 20350.032714 eV Total energy + Delta-G solvation = -3173.706189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71565 -39.47946 -37.66588 -35.64191 -33.79129 -33.21523 -32.28186 -29.78632 -28.88580 -28.13728 -27.05270 -25.27140 -24.89004 -23.09758 -22.26378 -20.54483 -19.01320 -18.14290 -18.04408 -17.16266 -16.75485 -16.47888 -15.98862 -15.70277 -15.40348 -15.17780 -15.10676 -14.79040 -14.49309 -14.23967 -14.06908 -13.69886 -13.52504 -13.45899 -13.32305 -12.78575 -12.71597 -12.53644 -12.42653 -12.32609 -12.06412 -11.87996 -11.76826 -11.74303 -11.70571 -11.57623 -11.38301 -10.83998 -10.27874 -9.94617 -9.58498 -8.66080 -8.22002 -5.72148 0.47812 1.26141 1.35385 1.44508 2.12133 2.35461 2.39834 3.07561 3.25434 3.63154 3.69002 3.94968 4.10153 4.20052 4.22062 4.28157 4.39347 4.43512 4.49152 4.56849 4.64039 4.67595 4.72669 4.78323 4.84721 4.86819 4.90598 4.93644 4.95835 4.98128 5.15855 5.18394 5.23930 5.25352 5.26769 5.50015 5.54027 5.59873 5.61811 5.83659 5.90250 6.13568 6.62908 6.87850 7.33193 7.52033 8.00278 8.96514 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.004542 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.098742 B = 6163.618192 C = 6524.893081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 C -0.247 4.247 4 C 0.524 3.476 5 O -0.550 6.550 6 N -0.607 5.607 7 C 0.111 3.889 8 C 0.114 3.886 9 N -0.620 5.620 10 C -0.254 4.254 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.954 5.954 14 Si 0.949 3.051 15 H -0.272 1.272 16 H -0.306 1.306 17 H -0.270 1.270 18 C 0.128 3.872 19 C 0.100 3.900 20 C -0.036 4.036 21 C -0.100 4.100 22 C -0.138 4.138 23 C -0.110 4.110 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.264 0.736 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 -16.758 -4.944 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 C -0.268 4.268 4 C 0.319 3.681 5 O -0.431 6.431 6 N -0.339 5.339 7 C -0.014 4.014 8 C -0.012 4.012 9 N -0.346 5.346 10 C -0.384 4.384 11 H 0.071 0.929 12 C -0.214 4.214 13 N -0.599 5.599 14 Si 0.778 3.222 15 H -0.198 1.198 16 H -0.234 1.234 17 H -0.195 1.195 18 C 0.002 3.998 19 C -0.024 4.024 20 C -0.036 4.036 21 C -0.157 4.157 22 C -0.195 4.195 23 C -0.167 4.167 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.167 0.833 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.709 -17.189 -4.834 25.149 hybrid contribution 1.288 0.209 0.749 1.505 sum -16.421 -16.980 -4.085 23.972 Atomic orbital electron populations 1.21152 0.88529 1.04522 1.04102 1.22928 0.97368 0.93537 0.87595 1.22476 0.91711 1.00255 1.12327 1.18982 0.89646 0.82452 0.77069 1.90879 1.71764 1.30241 1.50257 1.47975 1.06327 1.06740 1.72903 1.21828 0.80736 1.00359 0.98502 1.21683 0.96405 0.87083 0.96017 1.44347 1.02123 1.00809 1.87275 1.18774 1.08082 0.91742 1.19826 0.92901 1.26163 0.98368 0.97921 0.98982 1.69877 1.16528 1.30452 1.43055 0.85870 0.77758 0.79092 0.79492 1.19849 1.23392 1.19540 1.21649 0.82678 0.99561 0.95862 1.22436 0.97509 0.83263 0.99165 1.19662 0.94825 0.92797 0.96280 1.21768 0.98645 1.00033 0.95268 1.22050 0.98285 0.96662 1.02545 1.22052 0.97329 1.01624 0.95728 0.88878 0.89332 0.90122 0.83332 0.91713 0.89607 0.92124 0.95965 0.92695 0.95232 0.90235 0.91415 0.86381 0.93611 0.93933 0.94618 0.91415 0.92635 0.91108 0.93166 0.94104 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.21 71.24 0.66 -0.79 16 2 C -0.01 -0.24 4.92 -17.61 -0.09 -0.32 16 3 C -0.25 -5.60 8.36 23.43 0.20 -5.40 16 4 C 0.52 15.96 5.76 86.57 0.50 16.46 16 5 O -0.55 -18.62 7.75 -4.06 -0.03 -18.65 16 6 N -0.61 -19.81 2.95 -821.42 -2.42 -22.23 16 7 C 0.11 4.09 6.60 86.42 0.57 4.66 16 8 C 0.11 4.98 4.35 86.42 0.38 5.36 16 9 N -0.62 -28.90 2.58 -697.35 -1.80 -30.70 16 10 C -0.25 -14.20 9.96 84.03 0.84 -13.37 16 11 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 12 C -0.02 -1.05 5.36 84.86 0.45 -0.59 16 13 N -0.95 -59.42 13.97 21.65 0.30 -59.12 16 14 Si 0.95 47.41 24.40 68.60 1.67 49.08 16 15 H -0.27 -12.93 6.60 99.48 0.66 -12.28 16 16 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 17 H -0.27 -13.32 6.72 99.48 0.67 -12.65 16 18 C 0.13 4.69 6.70 86.56 0.58 5.27 16 19 C 0.10 2.89 6.50 86.57 0.56 3.45 16 20 C -0.04 -0.76 0.75 -52.93 -0.04 -0.80 16 21 C -0.10 -2.57 7.63 71.98 0.55 -2.02 16 22 C -0.14 -2.08 6.98 71.98 0.50 -1.58 16 23 C -0.11 -2.78 7.50 71.98 0.54 -2.24 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.82 6.05 -2.39 -0.01 0.81 16 26 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 27 H 0.15 2.62 5.94 -2.91 -0.02 2.60 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 29 H 0.09 3.12 6.99 -2.38 -0.02 3.11 16 30 H 0.06 2.86 5.20 -2.38 -0.01 2.84 16 31 H 0.02 1.01 6.99 -2.39 -0.02 0.99 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.12 2.46 5.37 -2.39 -0.01 2.45 16 37 H 0.05 0.99 7.72 -2.39 -0.02 0.97 16 38 H 0.04 1.23 6.77 -2.39 -0.02 1.22 16 39 H 0.03 1.07 5.76 -2.39 -0.01 1.06 16 40 H 0.07 0.85 7.96 -2.38 -0.02 0.83 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.87 6.72 -2.38 -0.02 0.85 16 43 H 0.05 1.47 4.68 -2.87 -0.01 1.46 16 44 H 0.04 1.14 7.06 -2.38 -0.02 1.12 16 45 H 0.04 0.87 7.79 -2.39 -0.02 0.85 16 Total: -1.00 -68.13 326.70 4.80 -63.32 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.88 Total: 10.22 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.20 Total: 8.07 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -3.92 Total: -112.05 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.03 Total: -18.65 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -68.13 4.80 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744554117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.152 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds