Wall clock time and date at job start Tue Mar 31 2020 03:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46789 * 2 1 4 4 H 1.09009 * 109.46610 * 179.64507 * 3 2 1 5 5 N 1.46896 * 109.47542 * 59.64686 * 3 2 1 6 6 C 1.46905 * 110.99928 * 85.55030 * 5 3 2 7 7 C 1.53000 * 109.47047 * 175.68879 * 6 5 3 8 8 H 1.09008 * 109.47421 * 305.00372 * 7 6 5 9 9 C 1.47200 * 109.47224 * 65.00002 * 7 6 5 10 10 N 5.06103 * 67.50332 * 66.45702 * 2 1 3 11 11 C 1.53003 * 109.47165 * 185.00426 * 7 6 5 12 12 C 1.50700 * 109.46944 * 175.00031 * 11 7 6 13 13 H 1.07993 * 120.00253 * 0.02562 * 12 11 7 14 14 C 1.37880 * 119.99736 * 179.97438 * 12 11 7 15 15 N 1.31510 * 119.99931 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99775 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47314 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46987 * 120.00317 * 16 14 12 19 19 H 1.48506 * 109.46631 * 239.99738 * 16 14 12 20 20 C 1.52995 * 109.47712 * 299.64232 * 3 2 1 21 21 C 1.53179 * 109.54630 * 180.02562 * 20 3 2 22 22 C 1.53092 * 109.16218 * 176.84946 * 21 20 3 23 23 O 1.42905 * 109.41625 * 302.39148 * 22 21 20 24 24 C 1.42906 * 114.09516 * 61.15826 * 23 22 21 25 25 C 1.53084 * 109.41708 * 298.84025 * 24 23 22 26 26 H 1.08998 * 109.46869 * 66.38004 * 1 2 3 27 27 H 1.08998 * 109.46695 * 186.37565 * 1 2 3 28 28 H 1.08994 * 109.46969 * 306.37809 * 1 2 3 29 29 H 1.09004 * 109.46661 * 240.00019 * 2 1 3 30 30 H 1.08998 * 109.46823 * 120.00206 * 2 1 3 31 31 H 1.00902 * 111.00695 * 209.50958 * 5 3 2 32 32 H 1.08997 * 109.47247 * 295.68974 * 6 5 3 33 33 H 1.08995 * 109.46967 * 55.69061 * 6 5 3 34 34 H 1.08997 * 109.46859 * 294.99507 * 11 7 6 35 35 H 1.08994 * 109.47269 * 55.00078 * 11 7 6 36 36 H 0.97004 * 120.00057 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.54128 * 59.82286 * 20 3 2 38 38 H 1.08998 * 109.52057 * 56.94756 * 21 20 3 39 39 H 1.08998 * 109.57396 * 296.78645 * 21 20 3 40 40 H 1.08997 * 109.48237 * 182.40872 * 22 21 20 41 41 H 1.09007 * 109.48314 * 62.37464 * 22 21 20 42 42 H 1.09000 * 109.48099 * 58.82689 * 24 23 22 43 43 H 1.09002 * 109.47827 * 178.85892 * 24 23 22 44 44 H 1.09001 * 109.52762 * 297.70728 * 25 24 23 45 45 H 1.08997 * 109.57835 * 177.54489 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0064 5 7 1.5434 2.1375 1.1951 6 6 2.4275 1.9047 2.3449 7 6 1.9393 2.7279 3.5386 8 1 1.8669 3.7770 3.2513 9 6 0.6153 2.2425 3.9608 10 7 -0.4064 1.8677 4.2867 11 6 2.9287 2.5835 4.6967 12 6 2.5140 3.4891 5.8276 13 1 1.6327 4.1056 5.7302 14 6 3.2591 3.5297 6.9869 15 7 4.3315 2.7778 7.1060 16 14 2.7447 4.6517 8.3890 17 1 1.5124 5.3874 8.0077 18 1 2.4804 3.8379 9.6027 19 1 3.8328 5.6222 8.6710 20 6 1.5374 2.1612 -1.2536 21 6 2.0476 3.6055 -1.2556 22 6 1.6060 4.2927 -2.5503 23 8 2.1021 3.5580 -3.6712 24 6 1.6208 2.2146 -3.7476 25 6 2.0630 1.4440 -2.5010 26 1 -0.3633 0.4118 -0.9416 27 1 -0.3633 -1.0213 0.1141 28 1 -0.3633 0.6095 0.8274 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4314 3.1247 1.0190 32 1 2.4152 0.8461 2.6043 33 1 3.4436 2.2041 2.0884 34 1 2.9348 1.5498 5.0425 35 1 3.9273 2.8592 4.3579 36 1 4.8560 2.8066 7.9215 37 1 0.4474 2.1591 -1.2628 38 1 3.1359 3.6074 -1.1951 39 1 1.6342 4.1400 -0.4002 40 1 2.0024 5.3077 -2.5767 41 1 0.5172 4.3264 -2.5910 42 1 0.5323 2.2212 -3.8038 43 1 2.0280 1.7326 -4.6364 44 1 3.1516 1.4022 -2.4655 45 1 1.6606 0.4316 -2.5356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746400911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:55 Heat of formation + Delta-G solvation = -50.778594 kcal Electronic energy + Delta-G solvation = -22377.122181 eV Core-core repulsion = 19200.397619 eV Total energy + Delta-G solvation = -3176.724562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02485 -37.82881 -36.29211 -34.11120 -33.06167 -32.32708 -31.43302 -30.57953 -27.27900 -25.71783 -24.35449 -23.51659 -22.73359 -21.75899 -20.82413 -19.40062 -17.30458 -16.48968 -16.36700 -16.21831 -15.71972 -14.94881 -14.77625 -14.58457 -14.44262 -14.24497 -13.55074 -13.45203 -13.35540 -12.75158 -12.54732 -12.42026 -12.08682 -12.03771 -11.86991 -11.71096 -11.56999 -11.34402 -11.19314 -11.10510 -10.95911 -10.75433 -10.62675 -10.49557 -10.43232 -10.35455 -10.23526 -9.71493 -9.52103 -9.21678 -8.47802 -8.26757 -6.11164 -4.14320 3.27244 3.35631 3.40112 3.64354 3.73222 3.82441 4.14523 4.40331 4.44077 4.52941 4.65286 4.78049 4.90558 4.96022 5.12983 5.14718 5.19099 5.27113 5.31494 5.35340 5.43475 5.50366 5.56575 5.62544 5.63712 5.69640 5.75719 5.80715 5.86888 5.97932 6.01984 6.10005 6.21938 6.28037 6.38855 6.47245 6.57115 6.95633 7.14816 7.40750 7.49791 7.52952 7.84230 8.21539 8.57745 8.90742 9.51341 10.99748 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.003511 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.417459 B = 7973.155430 C = 8440.849219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.094 3.906 4 H 0.046 0.954 5 N -0.687 5.687 6 C 0.067 3.933 7 C 0.009 3.991 8 H 0.097 0.903 9 C 0.255 3.745 10 N -0.479 5.479 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.092 4.092 21 C -0.157 4.157 22 C 0.062 3.938 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.150 4.150 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.340 0.660 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -1.306 -21.443 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.015 4.015 4 H 0.064 0.936 5 N -0.321 5.321 6 C -0.063 4.063 7 C -0.013 4.013 8 H 0.115 0.885 9 C -0.062 4.062 10 N -0.155 5.155 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.111 4.111 21 C -0.195 4.195 22 C -0.014 4.014 23 O -0.304 6.304 24 C -0.016 4.016 25 C -0.188 4.188 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.032 -2.332 -20.788 21.303 hybrid contribution 0.821 1.129 0.881 1.651 sum -3.211 -1.204 -19.907 20.200 Atomic orbital electron populations 1.21680 0.95441 1.00907 1.02110 1.21532 0.96937 0.95365 1.01226 1.21516 0.96902 0.94352 0.88766 0.93629 1.60592 1.50983 1.16204 1.04288 1.22118 0.94032 1.01003 0.89142 1.19229 0.86439 0.98901 0.96777 0.88482 1.28850 0.93897 0.92348 0.91098 1.80985 1.13213 1.10238 1.11102 1.19165 0.92878 0.98456 0.90213 1.21179 1.11074 1.24317 0.99816 0.92461 1.24957 0.94874 0.95677 0.98488 1.69947 1.16309 1.39296 1.27451 0.86541 0.78645 0.80643 0.82289 1.19666 1.20958 1.20855 1.21387 1.01340 0.94150 0.94182 1.22322 1.02248 0.96349 0.98607 1.22559 0.98167 0.95388 0.85314 1.87927 1.71494 1.24445 1.46555 1.22571 0.98249 0.82723 0.98036 1.22257 1.02063 0.99804 0.94643 0.93639 0.93972 0.90874 0.92284 0.92023 0.83992 0.90552 0.93356 0.95570 0.94493 0.92848 0.89910 0.90922 0.90402 0.88888 0.93198 0.93322 0.89083 0.91028 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.31 37.16 0.35 -1.26 16 2 C -0.11 -1.19 5.47 -26.73 -0.15 -1.34 16 3 C 0.09 0.98 1.92 -67.72 -0.13 0.85 16 4 H 0.05 0.49 7.72 -51.92 -0.40 0.09 16 5 N -0.69 -8.39 5.15 -106.73 -0.55 -8.94 16 6 C 0.07 0.96 4.89 -3.82 -0.02 0.94 16 7 C 0.01 0.15 2.32 -93.41 -0.22 -0.06 16 8 H 0.10 1.60 8.13 -51.92 -0.42 1.18 16 9 C 0.25 5.24 13.67 -20.76 -0.28 4.96 16 10 N -0.48 -10.75 18.54 42.16 0.78 -9.96 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 12 C -0.53 -13.92 8.60 -34.44 -0.30 -14.22 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.09 -0.81 1.65 -90.44 -0.15 -0.96 16 21 C -0.16 -1.36 5.11 -26.59 -0.14 -1.49 16 22 C 0.06 0.53 6.84 37.20 0.25 0.78 16 23 O -0.39 -3.90 10.77 -35.23 -0.38 -4.28 16 24 C 0.06 0.49 6.84 37.20 0.25 0.74 16 25 C -0.15 -1.19 4.98 -26.59 -0.13 -1.32 16 26 H 0.04 0.45 6.79 -51.93 -0.35 0.09 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 29 H 0.06 0.53 6.50 -51.93 -0.34 0.20 16 30 H 0.06 0.74 7.58 -51.93 -0.39 0.34 16 31 H 0.34 3.82 6.15 -39.29 -0.24 3.58 16 32 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 33 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.08 0.79 6.58 -51.93 -0.34 0.44 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.64 6.36 -51.93 -0.33 0.31 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.56 6.62 -51.93 -0.34 0.22 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -30.01 354.62 -7.66 -37.67 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.69 Total: -1.16 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.87 Total: -10.17 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.97 Total: -43.63 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.38 Total: -4.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.01 -7.66 -37.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746400911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.108 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds