Wall clock time and date at job start Tue Mar 31 2020 03:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46789 * 2 1 4 4 H 1.09009 * 109.46610 * 179.64507 * 3 2 1 5 5 N 1.46896 * 109.47542 * 59.64686 * 3 2 1 6 6 C 1.46905 * 110.99928 * 85.55030 * 5 3 2 7 7 C 1.53000 * 109.47047 * 175.68879 * 6 5 3 8 8 H 1.09008 * 109.47421 * 305.00372 * 7 6 5 9 9 C 1.47200 * 109.47224 * 65.00002 * 7 6 5 10 10 N 5.06103 * 67.50332 * 66.45702 * 2 1 3 11 11 C 1.53003 * 109.47165 * 185.00426 * 7 6 5 12 12 C 1.50700 * 109.46944 * 175.00031 * 11 7 6 13 13 H 1.07993 * 120.00253 * 0.02562 * 12 11 7 14 14 C 1.37880 * 119.99736 * 179.97438 * 12 11 7 15 15 N 1.31510 * 119.99931 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99775 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47314 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46987 * 120.00317 * 16 14 12 19 19 H 1.48506 * 109.46631 * 239.99738 * 16 14 12 20 20 C 1.52995 * 109.47712 * 299.64232 * 3 2 1 21 21 C 1.53179 * 109.54630 * 180.02562 * 20 3 2 22 22 C 1.53092 * 109.16218 * 176.84946 * 21 20 3 23 23 O 1.42905 * 109.41625 * 302.39148 * 22 21 20 24 24 C 1.42906 * 114.09516 * 61.15826 * 23 22 21 25 25 C 1.53084 * 109.41708 * 298.84025 * 24 23 22 26 26 H 1.08998 * 109.46869 * 66.38004 * 1 2 3 27 27 H 1.08998 * 109.46695 * 186.37565 * 1 2 3 28 28 H 1.08994 * 109.46969 * 306.37809 * 1 2 3 29 29 H 1.09004 * 109.46661 * 240.00019 * 2 1 3 30 30 H 1.08998 * 109.46823 * 120.00206 * 2 1 3 31 31 H 1.00902 * 111.00695 * 209.50958 * 5 3 2 32 32 H 1.08997 * 109.47247 * 295.68974 * 6 5 3 33 33 H 1.08995 * 109.46967 * 55.69061 * 6 5 3 34 34 H 1.08997 * 109.46859 * 294.99507 * 11 7 6 35 35 H 1.08994 * 109.47269 * 55.00078 * 11 7 6 36 36 H 0.97004 * 120.00057 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.54128 * 59.82286 * 20 3 2 38 38 H 1.08998 * 109.52057 * 56.94756 * 21 20 3 39 39 H 1.08998 * 109.57396 * 296.78645 * 21 20 3 40 40 H 1.08997 * 109.48237 * 182.40872 * 22 21 20 41 41 H 1.09007 * 109.48314 * 62.37464 * 22 21 20 42 42 H 1.09000 * 109.48099 * 58.82689 * 24 23 22 43 43 H 1.09002 * 109.47827 * 178.85892 * 24 23 22 44 44 H 1.09001 * 109.52762 * 297.70728 * 25 24 23 45 45 H 1.08997 * 109.57835 * 177.54489 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0064 5 7 1.5434 2.1375 1.1951 6 6 2.4275 1.9047 2.3449 7 6 1.9393 2.7279 3.5386 8 1 1.8669 3.7770 3.2513 9 6 0.6153 2.2425 3.9608 10 7 -0.4064 1.8677 4.2867 11 6 2.9287 2.5835 4.6967 12 6 2.5140 3.4891 5.8276 13 1 1.6327 4.1056 5.7302 14 6 3.2591 3.5297 6.9869 15 7 4.3315 2.7778 7.1060 16 14 2.7447 4.6517 8.3890 17 1 1.5124 5.3874 8.0077 18 1 2.4804 3.8379 9.6027 19 1 3.8328 5.6222 8.6710 20 6 1.5374 2.1612 -1.2536 21 6 2.0476 3.6055 -1.2556 22 6 1.6060 4.2927 -2.5503 23 8 2.1021 3.5580 -3.6712 24 6 1.6208 2.2146 -3.7476 25 6 2.0630 1.4440 -2.5010 26 1 -0.3633 0.4118 -0.9416 27 1 -0.3633 -1.0213 0.1141 28 1 -0.3633 0.6095 0.8274 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4314 3.1247 1.0190 32 1 2.4152 0.8461 2.6043 33 1 3.4436 2.2041 2.0884 34 1 2.9348 1.5498 5.0425 35 1 3.9273 2.8592 4.3579 36 1 4.8560 2.8066 7.9215 37 1 0.4474 2.1591 -1.2628 38 1 3.1359 3.6074 -1.1951 39 1 1.6342 4.1400 -0.4002 40 1 2.0024 5.3077 -2.5767 41 1 0.5172 4.3264 -2.5910 42 1 0.5323 2.2212 -3.8038 43 1 2.0280 1.7326 -4.6364 44 1 3.1516 1.4022 -2.4655 45 1 1.6606 0.4316 -2.5356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746400911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:54 Heat of formation + Delta-G solvation = -68.422038 kcal Electronic energy + Delta-G solvation = -22377.887258 eV Core-core repulsion = 19200.397619 eV Total energy + Delta-G solvation = -3177.489639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76213 -38.91965 -37.63128 -35.71567 -34.65465 -33.19002 -32.55574 -31.59811 -28.66552 -26.96917 -25.16559 -24.46831 -23.88677 -23.44177 -21.57566 -20.21947 -18.69285 -18.37222 -17.29096 -16.88499 -16.77467 -16.44545 -15.69580 -15.66691 -15.47234 -15.25954 -14.81028 -14.49705 -14.35716 -14.19129 -13.95044 -13.73708 -13.40583 -13.16241 -13.07080 -12.99005 -12.90466 -12.57208 -12.46339 -12.35281 -12.22329 -12.00698 -11.93657 -11.85857 -11.50324 -11.29274 -11.24071 -11.07431 -11.01240 -10.56482 -10.35892 -9.25676 -8.20172 -6.28386 1.38576 1.41834 1.52098 2.08249 2.14765 2.40977 3.01938 3.15044 3.19281 3.36840 3.71038 3.79964 3.97949 4.14117 4.18677 4.30306 4.34738 4.39442 4.44959 4.49474 4.54789 4.66787 4.75555 4.78752 4.83617 4.85355 4.88458 4.91956 4.97108 5.04832 5.11264 5.19445 5.24009 5.26823 5.41551 5.46374 5.49269 5.60176 5.62474 5.78804 6.11069 6.22956 6.33158 6.57872 6.83280 6.94314 7.40425 8.90952 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.003511 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.417459 B = 7973.155430 C = 8440.849219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.098 3.902 4 H 0.046 0.954 5 N -0.691 5.691 6 C 0.080 3.920 7 C 0.020 3.980 8 H 0.120 0.880 9 C 0.265 3.735 10 N -0.513 5.513 11 C 0.038 3.962 12 C -0.537 4.537 13 H 0.055 0.945 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.085 4.085 21 C -0.155 4.155 22 C 0.060 3.940 23 O -0.406 6.406 24 C 0.057 3.943 25 C -0.145 4.145 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.347 0.653 32 H 0.065 0.935 33 H 0.063 0.937 34 H -0.001 1.001 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -0.645 -22.806 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.012 4.012 4 H 0.064 0.936 5 N -0.326 5.326 6 C -0.050 4.050 7 C -0.002 4.002 8 H 0.137 0.863 9 C -0.051 4.051 10 N -0.191 5.191 11 C -0.001 4.001 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.774 3.226 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.104 4.104 21 C -0.193 4.193 22 C -0.016 4.016 23 O -0.325 6.325 24 C -0.019 4.019 25 C -0.183 4.183 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.168 0.832 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.221 -1.664 -22.165 22.625 hybrid contribution 0.870 0.899 1.276 1.787 sum -3.351 -0.765 -20.889 21.170 Atomic orbital electron populations 1.21610 0.95802 1.00456 1.01724 1.21544 0.96510 0.95554 1.01381 1.21528 0.96903 0.94190 0.88561 0.93564 1.60529 1.50576 1.17011 1.04435 1.21886 0.94915 0.99600 0.88587 1.19186 0.83873 1.00842 0.96306 0.86282 1.29329 0.94117 0.91414 0.90210 1.80983 1.14476 1.11536 1.12065 1.18985 0.94023 0.96007 0.91101 1.21583 1.10665 1.24388 1.00908 0.92709 1.25721 0.95054 0.97102 1.00948 1.70040 1.17367 1.40777 1.28204 0.85641 0.78571 0.79048 0.79298 1.19288 1.21221 1.19792 1.21313 1.01055 0.94288 0.93738 1.22292 1.01818 0.96229 0.98933 1.22636 0.98555 0.95630 0.84782 1.87903 1.72007 1.25444 1.47148 1.22705 0.98748 0.81959 0.98483 1.22221 1.01769 1.00196 0.94100 0.92125 0.93947 0.93599 0.90289 0.93718 0.83160 0.91645 0.91903 0.98290 0.94737 0.92739 0.90197 0.91540 0.90039 0.88180 0.92607 0.92660 0.87884 0.91455 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.31 71.98 0.67 -2.25 16 2 C -0.11 -2.20 5.47 30.59 0.17 -2.03 16 3 C 0.10 1.85 1.92 44.91 0.09 1.94 16 4 H 0.05 0.90 7.72 -2.38 -0.02 0.89 16 5 N -0.69 -15.87 5.15 -491.59 -2.53 -18.41 16 6 C 0.08 2.22 4.89 86.30 0.42 2.64 16 7 C 0.02 0.69 2.32 -12.60 -0.03 0.66 16 8 H 0.12 3.69 8.13 -2.38 -0.02 3.67 16 9 C 0.27 10.82 13.67 89.44 1.22 12.04 16 10 N -0.51 -23.01 18.54 20.01 0.37 -22.64 16 11 C 0.04 1.73 4.42 29.85 0.13 1.86 16 12 C -0.54 -28.32 8.60 25.60 0.22 -28.10 16 13 H 0.05 2.86 7.59 -2.91 -0.02 2.84 16 14 C 0.01 0.58 5.46 84.66 0.46 1.04 16 15 N -0.92 -53.05 13.29 21.45 0.28 -52.76 16 16 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 C -0.09 -1.33 1.65 -10.67 -0.02 -1.35 16 21 C -0.15 -2.37 5.11 30.68 0.16 -2.21 16 22 C 0.06 0.91 6.84 72.01 0.49 1.41 16 23 O -0.41 -7.48 10.77 -148.98 -1.60 -9.08 16 24 C 0.06 0.79 6.84 72.01 0.49 1.28 16 25 C -0.14 -1.97 4.98 30.68 0.15 -1.81 16 26 H 0.06 1.07 6.79 -2.39 -0.02 1.06 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.04 1.22 7.40 -2.39 -0.02 1.21 16 29 H 0.08 1.24 6.50 -2.38 -0.02 1.23 16 30 H 0.04 1.03 7.58 -2.39 -0.02 1.01 16 31 H 0.35 7.12 6.15 -89.69 -0.55 6.57 16 32 H 0.07 1.97 7.58 -2.39 -0.02 1.95 16 33 H 0.06 1.58 7.95 -2.39 -0.02 1.56 16 34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.08 1.33 6.58 -2.39 -0.02 1.32 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.18 6.36 -2.39 -0.02 1.16 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.09 1.02 6.62 -2.39 -0.02 1.00 16 Total: -1.00 -63.61 354.62 3.59 -60.02 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.41 Total: 12.37 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.63 Total: -14.89 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -1.88 Total: -93.81 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -1.60 Total: -9.08 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -63.61 3.59 -60.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746400911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.403 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds